Spatial_Transcriptomics @SpatialTrans

Sydney Joined October 2022

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Hamid Rokny @HamidRokny

2 years ago

🎉I'm very excited to share #scGSLoop, which leverages #InterpretableAI to pinpoint regulatory regions from #scHiC, and we're honoured to have it published in @AdvancedScnce. Link: t.ly/15isI A major shoutout to @fuzhou_wang, who developed the model. #BioMedEng

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Hamid Rokny @HamidRokny

2 years ago

Right now @UNSW BioMedical Eng School's Open Day!🌟Such an exhilarating day filled with promise and discovery for the next generation of Australian Biomed Eng scientists, especially those with a passion for #MedicalAI, #ML_in_Biology. #BioMedEng #UNSWScientiaFellows

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Hamid Rokny @HamidRokny

2 years ago

@UNSW’s 2023 Open Day is on 2 Sep! Join us on campus for a showcase of the UNSW BioMedical Eng’s world-leading research, and of the opportunities that come with pursuing a #BioMedEng degree with a focus on #MedicalAI, #PredictiveAnalytics, #ML_in_Biology at UNSW. #UNSWscientia

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Hamid Rokny @HamidRokny

2 years ago

🌟 Explore the world of #AI #ML in BioMedical research with 5 generously funded Ph.D positions available @UNSW BioMed School! 3 supported by @CSIRO NGGP see med-tech.ai) 2 supported by @arc_gov_au Please tag and share with other who are ready to make a difference!🙂

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Hamid Rokny @HamidRokny

2 years ago

Enjoying #EMBC23 with my friends @FarbehiNona, @tianruo Guo, @A_Hasheminasab, and the conference chair, @nigelhlovell. Hats off to the fantastic collab between @UNSW School of Biomedical Engineering and the @IEEEembs for putting together an exceptional conference! 🎉👍 #BioMedEng

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Hamid Rokny @HamidRokny

2 years ago

#EMBC23 is now live! So proud to represent the UNSW Biomedical Engineering by chairing the following sessions: 📅 25 Jul - 15:00-16:30, C4.5 📅 26 Jul - 08:00-09:30, C4.11 Join us to uncover the latest of #AI & #ML in Biomed Engineering. @nigelhlovell #BioMedEng #UNSWscientia

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Hamid Rokny @HamidRokny

2 years ago

Very happy to see three of my students attending #ICG2023. Make sure to check out @mreza_ef's poster (#220) for a glimpse into his groundbreaking research on #multiome. It's definitely worth a visit! 🙂 @nigelhlovell @mritchieau @Rachel_Thijssen #BioMedEng #UNSWscientia

Reza @Reza_Ghamsari

2 years ago

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Hamid Rokny @HamidRokny

3 years ago

had 2 #NHMRC Ideas grant as CI, one rejected but, so happy😊 to see another one (led by @voineagulab) has been funded, finally. Can't wait to work on this exciting project on the assessment of enhancer function in human brain by #AI #CRISPRi #screening. #UNSWscientia #BioMedEng

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Hamid Rokny @HamidRokny

3 years ago

I am very proud of my first-year Ph.D student, @mahdieh_labani, for receiving the "Excellence in Research & Innovation Award" from "Centre for Applied Artificial Intelligence".😊 Thanks to the Centre and its Director, @amin_beheshti, for their support. #UNSWscientia #BioMedEng

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Hamid Rokny @HamidRokny

3 years ago

I am happy to share that I`ve joined @uDASH_UNSW as the Health Data Science Lead. Hopefully, I can make a bridge between Health Data Scientists & Health Data Engineers @UNSW😉 Expect us in 2023 for a couple of exciting activities. tinyurl.com/3wpd97vz #UNSWscientia #BioMedEng

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Hamid Rokny @HamidRokny

3 years ago

Well done @UNSW and @UNSWGRS. Now we are the second-highest stipend among @GroupOfEight universities. Thanks to our lovely Vice-Chancellor Attila Brungs, @Jonatha16752881, @Polymer_Penny for hearing the voice. #HDR students enjoy the additional money 😉 #UNSWscientia #BioMedEng

UNSW @UNSW

3 years ago

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Hamid Rokny @HamidRokny

3 years ago

I will be talking @Sydney_Uni next week. In this talk, I will focus on the importance of using #AI in Medicine and will highlight the latest works in my lab that are the foundation of our recent grants Looking forward to seeing you there😊 @OmidKavehei #UNSWscientia #BioMedEng

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Hamid Rokny @HamidRokny

3 years ago

I'm so happy to announce that our CSIRO Next-Gen Grad Program on AI-enabled Diagnostics has been funded 1.7M to recruit 15 HDR stu; 5 for my Lab😊 cutt.ly/EMYRqRk Thanks @CSIRO @Strands23 #UNSWscientia for your support @vafaee_fatemeh @MortezaSaberi @uDASH_UNSW #BioMedEng

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Hamid Rokny @HamidRokny

3 years ago

Very happy to share my PhD student's new paper, PeakCNV, a new AI-based method to identify candidate CNVs in whole genome/exome, published in CSBJ. Read more here: doi.org/10.1016/j.csbj… @nigelhlovell, @amin_beheshti, @AliAfrasiabi12 @TyreeIHealthE #BioMedEng #UNSWscientia

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Hamid Rokny @HamidRokny

3 years ago

Collectively, more appropriate strategies are still needed for batch effect removal, transformation, overdispersion and zero inflation patterns in the analysis of Spatially Resolved Transcriptomics with Deep Learning techniques. arxiv.org/abs/2210.04453 #BioMedEng #UNSWscientia

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Hamid Rokny @HamidRokny

3 years ago

So happy to share this in-depth review on "Deep Learning for Spatially-Resolved Transcriptomics" come out from my Lab, written by my talented stu, Roxana Zahedi. More appropriate DL are still needed for SRT. arxiv.org/abs/2210.04453 Thanks @NOKaakoush @nigelhlovell @amin_beheshti!