zukowski-kacper.bsky.social @withbioinformat
Father. Passionate about bioinformatics and genomics research, focusing on cattle genomic selection and SNP parentage verification at NRIAP in Balice. crs.izoo.krakow.pl Polska Joined December 2011-
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GWAS SVatalog: a visualization tool to aid fine-mapping of GWAS loci with structural variations biorxiv.org/content/10.110… 🧬🖥️🧪 svatalog.research.sickkids.ca
Rethinking RNA-binding proteins: Riboregulation challenges prevailing views: Cell cell.com/cell/fulltext/…
User-friendly scheduler Using a hybrid architecture and supercomputing for big data processing biorxiv.org/content/10.110… #biorxiv_bioinfo
Genotype imputation from low-coverage data for medical and population genetic analyses genome.cshlp.org/content/35/9/1… 🧬🖥️🧪 github.com/SABiagini/GDI
GitHub Repositories for Sequencing Companies: Using #Rstats and the GitHub API to get licensing information for GitHub repos for sequencing-related companies, one-shot with GPT-5 doi.org/10.59350/steph…
Cheatsheet for purrr. Never repeat yourself again! #rstats If you are still using for loop, take a look at purrr::map() rstudio.github.io/cheatsheets/ht… rstudio.github.io/cheatsheets/pu…
📊 Just out in Bioinformatics Advances: “DgeaHeatmap: An R package for transcriptomic analysis and heatmap generation” Explore the full study: doi.org/10.1093/bioadv…
🚨NEWS!! OUR REST API V2 IS OUT!!! 🚨 ✅Find more data available thanks to new endpoints ✅New search and filtering functionalities ✅Integration with resources like Ensembl REST API v1 available until May ’26 More details tinyurl.com/bdzdbyuu
Zacina mi się obraz w aplikacji Canal Plus na telewizorze (inne działają bez zarzutu). Pomaga zmniejszenie jakości obrazu na SD, ale jest 2025 rok. Czy ktoś miał taki problem może i sobie z nim poradził? Reinstalacja nie pomogła.
Learn programming by playing games: JavaScript → javascriptquiz.com Blockchain → cryptozombies.io SQL → mystery.knightlab.com Python → codedex.io CSS → cssbattle.dev Go → codingame.com Java → tynker.com Git → ohmygit.org
DNA copy number variation is strongly buffered at the protein level. The buffering is much stronger than at the RNA level.
Want to add side plots to your ggplot2 visualizations in R? ggside, an extension of ggplot2, allows you to effortlessly integrate side panels, providing additional context without cluttering your main plot. ✔️ Add side plots such as histograms, density plots, or boxplots. ✔️…
This preprint from Helen Sakharova is one of the coolest things to come out of my lab: “Protein language models reveal evolutionary constraints on synonymous codon choice.” Codon choice is a big puzzle in genome information, and we have a new angle. biorxiv.org/content/10.110…
Gene-Set Enrichment Analysis and visualization on the web using EnrichmentMap: RNASeq. #GSEA #WebTool #RNAseq @BioinfoAdv academic.oup.com/bioinformatics…
Snappy: de novo identification of DNA methylation sites based on Oxford Nanopore reads biorxiv.org/content/10.110… #biorxiv_bioinfo
ProteoParc: A tool to generate protein reference databases for ancient and non-model organisms biorxiv.org/content/10.110… #biorxiv_bioinfo
UseR 2025: Plot Twist: Adding Interactivity to the Elegance of ggplot2 with ggiraph youtube.com/watch?v=GnDjRx… #Rstats
Using Human Protein Atlas to Find Tissue Specific Genes in R using bioconductor youtube.com/watch?v=aRj5Xp… #rstats
New online! Towards improved fine-mapping of candidate causal variants bit.ly/474ZgCN
SeuratExtend: streamlining single-cell RNA-seq analysis through an integrated and intuitive framework. #SingleCell #scRNAseq #Bioinformatics @GigaScience academic.oup.com/gigascience/ar…

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