Axel Martin @CLaunderer
Research biostatistician @sloan_kettering. Specialize in machine learning for predictive genomics. Interested in causal inference methods for ITRs. New York, NY Joined April 2019-
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Axel Martin retweeted
After pulling & QAing #genomics data, the {gnomeR} package (by @Hannah_Fuchs1, @arorarshi, @CLaunderer, @karissawhiting, Mike Curry and more) helps #rstats analysts process it into an analysis-ready format. Docs: mskcc-epi-bio.github.io/gnomeR/index.h… #rstats examples below 👇🧵
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Axel Martin retweeted
Today I want to highlight the {genieBPC} #rstats package by @jessicalavs, @sammi_brown8, @Hannah_Fuchs1, @CLaunderer, @statistishdan, and myself (@karissawhiting). It offers functions for pulling and processing data from the @AACR GENIE BPC Project genie-bpc.github.io/genieBPC/ #cran
Axel Martin retweeted
✨A new release of {cbioportalR} v1.1.0 is now available on CRAN! {cbioportalR} provides #rstats users with user-friendly functions for direct access to genomic and clinical data from the @cbioportal web resource. karissawhiting.com/cbioportalR Updates include: 🧵
Axel Martin retweeted
📢🔥🚨#MSKBiostats @MSKCancerCenter is #hiring a #statistics immuno-oncology postdoc 🔗tinyurl.com/msk-postdoc02 📩A cover letter, cv, and the names of 3⃣references to Dr. Ronglai Shen ([email protected]) 📌Successful applicant will be supervised by Drs. @ronglais & @KPanageas
📢🔥🚨#MSKBiostats @MSKCancerCenter is #hiring a #statistics immuno-oncology postdoc 🔗tinyurl.com/msk-postdoc02 📩A cover letter, cv, and the names of 3⃣references to Dr. Ronglai Shen ([email protected]) 📌Successful applicant will be supervised by Drs. @ronglais & @KPanageas
Axel Martin retweeted
🎉👏 #MSKBiostats @jessicalavs, @sammi_brown8, Mike Curry, @CLaunderer, @statistishdan & @karissawhiting recently developed {genieBPC}, a user-friendly #rstats package for processing complex clinico-genomic data from @AACR Project #genieBPC academic.oup.com/bioinformatics…
Axel Martin retweeted
👀We spy {genieBPC} on this list! #MSKBiostats @jessicalavs, @sammi_brown8, Mike Curry, @karissawhiting, @CLaunderer & @statistishdan collaborated on the {genieBPC} R package, a data processing pipeline for working with the @AACR #GENIEBPC data genie-bpc.github.io/genieBPC/
👀We spy {genieBPC} on this list! #MSKBiostats @jessicalavs, @sammi_brown8, Mike Curry, @karissawhiting, @CLaunderer & @statistishdan collaborated on the {genieBPC} R package, a data processing pipeline for working with the @AACR #GENIEBPC data genie-bpc.github.io/genieBPC/
Axel Martin retweeted
📅 Join us for the next #MSKBiostats seminar next Wed 5/4/2022 10;30am ET with guest speaker @ildiazm on Causal survival analysis under competing risks using longitudinal modified treatment policies 📩 Email Christy Rajcoomar to register: [email protected]
Axel Martin retweeted
The Australien Government has made an ad about Carbon Capture and Storage, and it’s surprisingly honest and informative. #CCS
Axel Martin retweeted
📣Yours truly made an appearance in this month’s @AmstatNews magazine!! @MSKBiostats @compbiopodcast @92Y check it out - “P is for Podcaster and Potter! And P-value!”. Honored to share a bit about myself 🙇🏻♀️
Axel Martin retweeted
Beyond excited to share our recent paper in @NatureComms on the prediction of the tissue site of origin of cancer tumors using the hidden genome of #rarevariants! Joint work with @CLaunderer, Zoe Guan, @ColinBBegg, and @ronglais. nature.com/articles/s4146… 1/n
Axel Martin retweeted
Using #genomic and #epigenomic meta-features to predict the tissue of origin of cancer from the hidden genome of #RareVariants: new #CancerResearch paper by @SaptarshiCh @CLaunderer @ColinBBegg @ronglais @NatResCancer go.nature.com/3uqzvGo
Axel Martin retweeted
Biostatisticians often get asked, "What exactly do you do?" @rkatlady has a great blog post that breaks down our day (and by hour!). Most of what we do involves: 👩💻🧑💻programming 📝writing 📚reading 🤝meeting & much more!
Biostatisticians often get asked, "What exactly do you do?" @rkatlady has a great blog post that breaks down our day (and by hour!). Most of what we do involves: 👩💻🧑💻programming 📝writing 📚reading 🤝meeting & much more!
Axel Martin retweeted
Axel Martin retweeted
My perspective of life in NYC last spring as a biostatistician on Covid-19 response efforts is in this month's @signmagazine. It's very personal writing, but I tried to use my own experiences to capture the escalation and shared emotions of the time.
My perspective of life in NYC last spring as a biostatistician on Covid-19 response efforts is in this month's @signmagazine. It's very personal writing, but I tried to use my own experiences to capture the escalation and shared emotions of the time.
Axel Martin retweeted
Axel Martin retweeted
Can tumor genomics help predict which patients are at risk for recurrence after resection of LUAD? We show that integration of genomic/clinicopathologic factors improves risk stratification and prediction of recurrence compared to the current TNM model. jamanetwork.com/journals/jamas…
Actually for those interested the 📦 ‘s website might be useful — axelitomartin.github.io/OncoCast/ — feedback welcome 🙏
Axel Martin retweeted
🙇♀️ So excited that our committee was awarded the @ASA_Biometrics grant so that we can continue to build the #BridgetoBiostats 🌉
🙇♀️ So excited that our committee was awarded the @ASA_Biometrics grant so that we can continue to build the #BridgetoBiostats 🌉
Axel Martin retweeted
🚨 New blog post (a series!) An Illustrated Guide to Targeted Maximum Likelihood Estimation 🎯 Part 1: motivation for “targeting” an estimand for inference and why we can & should incorporate data-adaptive/machine learning models 🧵1/ khstats.com/blog/tmle/tuto… #causaltwitter
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