single cell RNA seq @CellSeq
single cell RNA seq literature updates | #SingleCell #scRNAseq #Bioinformatics | maintained by @nr_claudio Joined December 2019-
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R 4.0.0 coming April 24 2020. Most notable new feature IMHO: R now uses a stringsAsFactors = FALSE default. stat.ethz.ch/R-manual/R-dev… My request for R 5.0.0: Include %>% in base R.
We are excited to present PIC-seq, a novel single cell technology for investigating cell-cell interactions, developed by @AmirGiladi and @meravcohen8, in collaboration with Amos Tanay. (1/11) nature.com/articles/s4158…
PARC: ultrafast and accurate clustering of phenotypic data of millions of single cells academic.oup.com/bioinformatics… github.com/ShobiStassen/P…
Early Transcriptional Landscapes of Chlamydia trachomatis-Infected Epithelial Cells at Single Cell Resolution. ncbi.nlm.nih.gov/pubmed/3180363…
Cerebro: Interactive visualization of scRNA-seq data. ncbi.nlm.nih.gov/pubmed/3176496…
Establishment of a high-resolution 3D modeling system for studying pancreatic epithelial cell biology in vitro. ncbi.nlm.nih.gov/pubmed/3176716…
Tumor mutation burden, immune checkpoint crosstalk and radiosensitivity in single-cell RNA sequencing data of breast cancer. ncbi.nlm.nih.gov/pubmed/3176747…
Embracing Systems Toxicology at Single-Cell Resolution. ncbi.nlm.nih.gov/pubmed/3176848…
Single-cell RNA sequencing reveals compartmental remodeling of tumor-infiltrating immune cells induced by anti-CD47 targeting in pancreatic cancer. ncbi.nlm.nih.gov/pubmed/3177161…
Commensal microbiota drive the functional diversification of colon macrophages. ncbi.nlm.nih.gov/pubmed/3177232…
SAME-clustering: Single-cell Aggregated Clustering via Mixture Model Ensemble. ncbi.nlm.nih.gov/pubmed/3177793…
Single-Cell Profiles of Retinal Ganglion Cells Differing in Resilience to Injury Reveal Neuroprotective Genes. ncbi.nlm.nih.gov/pubmed/3178428…
Single cell census of human kidney organoids shows reproducibility and diminished off-target cells after transplantation. ncbi.nlm.nih.gov/pubmed/3178451…
A systems-level framework for anti-epilepsy drug discovery. ncbi.nlm.nih.gov/pubmed/3178526…
Single-Cell Capture, RNA-seq, and Transcriptome Analysis from the Neural Retina. ncbi.nlm.nih.gov/pubmed/3178678…
Understanding the complexity of retina and pluripotent stem cell derived retinal organoids with single cell RNA sequencing: current progress, remaining challenges and future prospective. ncbi.nlm.nih.gov/pubmed/3179427…
Early Transcriptional Landscapes of Chlamydia trachomatis-Infected Epithelial Cells at Single Cell Resolution. ncbi.nlm.nih.gov/pubmed/3180363…
Dissecting the human immune system with single cell RNA sequencing technology. ncbi.nlm.nih.gov/pubmed/3180396…
Hic1 Defines Quiescent Mesenchymal Progenitor Subpopulations with Distinct Functions and Fates in Skeletal Muscle Regeneration. ncbi.nlm.nih.gov/pubmed/3180973…
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