Daniel Zuckerman @DMZuckermanLab
Computational biophysicist specializing in statistical mechanics methods applied to a wide range of molecular and cellular systems. Joined June 2021-
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Daniel Zuckerman retweeted
Having trouble visualizing your data from WESTPA? Try WEDAP! A user-friendly plotting package from @darianyang and @ltchong (1/4) pubs.acs.org/doi/10.1021/ac…
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Daniel Zuckerman retweeted
The Theory and Comp subgroup from Biophysical Society has an early and a mid-career award, apply before August 1! please RT biophysics.org/awards-funding…
Bayesian inference is vital to interpreting experimental data. Learn the relationship of BI to statistical mechanics including important nuances, and get a ‘sampling’ of modern Monte Carlo methods for BI. pubs.acs.org/doi/10.1021/ac…
Daniel Zuckerman retweeted
It's finally out! Outstanding work by @atbogetti @mczwier using @WestpaSoftware @ambermdprog
It's finally out! Outstanding work by @atbogetti @mczwier using @WestpaSoftware @ambermdprog
Daniel Zuckerman retweeted
A recent news article in Nature described increasing numbers of editors mass resigning from for-profit journals, a symptom of misalignment of incentives between publishers’ demand for growth and profits, and the academics’ priority of quality, depth: nature.com/articles/d4158… 1/n
Daniel Zuckerman retweeted
Awesome postdoc position alert!! Despite, or because of, being Twitter-less, Ed Lyman is a great mentor, scientist, and human being. Interested in membrane proteins, simulations, machine learning, physics, evolution, bioinformatics?? Apply! Check out below 👇👇👇
Daniel Zuckerman retweeted
New blog post up, on why @livecomsj matters! livecomsjournal.org/index.php/live… We're seeing some conventional journals adopting some of our ideas, so it's worth taking a moment to reflect. #compchem
Nonequilibrium physics rules the world. Here are eight chapters introducing key aspects of nonequilibrium biophysics illustrated with simple examples. osf.io/9yq2n/
Daniel Zuckerman retweeted
Register now for the free WESTPA Workshop @Pitt_Chemistry, June 20-21. Explore rare event simulations like protein folding, ligand binding, & chemical reactions with our open-source software. Perfect for those using AMBER, NAMD, GROMACS, etc. Reg info: forms.gle/6gJF6jJ72iexbD…
Daniel Zuckerman retweeted
And we also have a new suite of tutorials for getting started with the BioSimSpace framework for interoperable biomolecular simulations; this comes with a big set of example notebooks. livecomsjournal.org/index.php/live… #compchem
Daniel Zuckerman retweeted
We have a new tutorial out, on absolute binding free energy calculation via a NAMD-based approach, SAFEP. livecomsjournal.org/index.php/live…
Daniel Zuckerman retweeted
Possibly of interest to folks in the chemistry publishing/open access area. Does anyone know how download numbers for more traditional journals compare? Personally I haven't seen these types of stats except for preprints, where these seem to compare favorably, but I'm curious.
Possibly of interest to folks in the chemistry publishing/open access area. Does anyone know how download numbers for more traditional journals compare? Personally I haven't seen these types of stats except for preprints, where these seem to compare favorably, but I'm curious.
Nominate an outstanding early or mid-career scientist for an award from the Theory & Computation subgroup of the @BiophysicalSoc . biophysics.org/awards-funding…
Great opportunity to expand your skillset and impact!
Great opportunity to expand your skillset and impact!
Daniel Zuckerman retweeted
We have a new issue out! This includes our first "version 2" article, an updated and expanded article dealing with a new version of the WESTPA enhanced sampling package: livecomsjournal.org/index.php/live… Issue: livecomsjournal.org/index.php/live… #compchem
Statistical mechanics - equil and noneq - can enhance sampling and data analysis. Microscopic mechanisms can be inferred from simple experimental data. Learn how, in one of the most beautiful parts of the world. Postdoc/student, email your suitable background, project ideas.
Important effort here. How can trainees avoid common (and less common) mistakes?
Important effort here. How can trainees avoid common (and less common) mistakes?
Daniel Zuckerman retweeted
Our editorial on MD simulations presents a checklist for reporting and assessing simulation data and data #reproducibility as a guideline for publishing high quality computational work in the journal: nature.com/articles/s4200… by @lyna_yunluo @jungjin
Daniel Zuckerman retweeted
The Cell, Developmental & Cancer Biology Summer Research Internship at @OHSUKnight is an opportunity for undergraduates to immerse themselves in research with @OHSUKnight faculty. Learn more and apply to join us today: spr.ly/6012MLdae
OHSU has a great post-bac program for PEERs - "Persons Excluded because of their Ethnicity or Race". One year of paid, mentored research! Please spread the word to folks who might benefit. ohsu.edu/postbaccalaure…
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