Functional Genomics Core Facility (FGCF) @FunGenCore

Assisting the @IRBBarcelona community move forward their genomics and transcriptomics projects | genomics'at'irbbarcelona'dot'org | @freddymonteiro irbbarcelona.org/en/research/fu… Barcelona, Spain Joined July 2021

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SCENTINEL-Twinning @IMBB-FORTH | v.theodorou @scentinel_eu

a year ago

SCENTINEL 1st Workshop 2-6 Sep.2024 @IRBBarcelona Many thanks to Camille (IRB Bioinformatics) and Freddy (IRB Functional Genomics) and their team members, as well as to all IRB Admin personnel, for hosting a great workshop for @IMBB_FORTH and @IJMonod members

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SCENTINEL-Twinning @IMBB-FORTH | v.theodorou @scentinel_eu

a year ago

Welcome to SCENTINEL! a Horizon Europe Twinning collaborative initiative between @IMBB_FORTH (Delidakis lab, Lavigne lab, Genomics CF) @IRBBarcelona (Bioinformatics and Functional Genomics CF) @IJMonod (Konstantinides lab) @IGBMC (Giangrande lab) @Stockholm_Uni (Mannervik lab)

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Functional Genomics Core Facility (FGCF) @FunGenCore

a year ago

Help us achieve our goal: @IRBBarcelona Per molts anys! Fighting Mestastasis with Research and Knowledge. retometastasis.com/p2p/809?id=Per…

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Mariona Nadal-Ribelles @M_NadalRibelles

a year ago

Thrilled to share our latest preprint. We created a yeast single cell atlas of genetic x environmental perturbations of >3000 mutants. This has been my dream dataset for quite a while and we could not be happier to share it! 🥳🥳🥳

Cell Signaling Lab @PosasLab

a year ago

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Mariona Nadal-Ribelles @M_NadalRibelles

a year ago

Teamwork at @IRBBarcelona with @yocamilleyo and with @LarsMSteinmetz. Thanks to the @Singleron_Bio , @FunGenCore for all the help. We hope this can be interesting to the community @yeastgenome @yeast_papers and others. Link 👇👇 biorxiv.org/cgi/content/sh…

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Freddy (de Oliveira) Monteiro @freddymonteiro

a year ago

Come join us at IRB to discuss available automated tissue dissociation capacities for consistent & efficient single cell assays with Singleron PythoN Date: May 29 Time: 11:00 AM Location: PCB, Room TR 1. Carrer Baldiri Reixac 10. 08028. Barcelona. @Singleron_Bio @IRBBarcelona

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Sasha Gusev @SashaGusevPosts

2 years ago

I've written about race, genetic ancestry, analyses of large biobanks, and human history gusevlab.org/projects/hsq/#… I'll summarize the key points here 🧵:

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MultiQC @MultiQC

2 years ago

MultiQC v1.20 is here, and with it come some huge updates! 😲 In this release we are switching to @plotlygraphs for all report graphs 📈✨ This is a massive change which paves the way for many improvements in @MultiQC reporting. github.com/MultiQC/MultiQ…

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James Hadfield @coregenomics

2 years ago

That initial development was funded by the Knut and Alice Wallenberg Foundation (@KAWstiftelsen), at @scilifelab, who supports long-term, free basic research beneficial to Sweden. I’ve no idea what their IP policies are but this was probably not the outcome they were hoping for?

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Arjun Raj @arjunrajlab

2 years ago

Every so often, the question of whether to normalize RNA counts by cell volume comes up in lab. Default answer: "yes, normalize by volume". Why? It's not just that RNA correlates with volume. It's that the relationship is *causal*. If you increase volume, RNA goes up. Thread 1/

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Rahul Satija @satijalab

2 years ago

We compared six commercial + academic multiplexed in-situ gene expression profiling technologies. Check out our preprint, led by @AustinMHartman. Takeaway when evaluating spatial tech: consider both sensitivity and specificity! biorxiv.org/cgi/content/sh…

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Mate Maus @MateMaus

2 years ago

Excited to share our latest publication: we provide insight into fibrotic diseases. Our findings highlight iron accumulation as a key factor in fibrosis paving the way for new diagnostics and treatments for senescence-related conditions. 🧵 (1/7) nature.com/articles/s4225…

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IRB Barcelona @IRBBarcelona

2 years ago

Additionally, the team uncovers the potential of chemical compounds able to remove the accumulated iron, such as deferiprone (a clinically approved drug) to prevent fibrosis, thereby pointing to a new approach for treating fibrotic diseases.

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IRB Barcelona @IRBBarcelona

2 years ago

🔬Researchers at #IRBBarcelona led by Dr. #ManuelSerrano reveal the pivotal role of iron accumulation in the development of fibrotic diseases. 📰@NatMetabolism ➡️bit.ly/3RI4uN1 📌DOI:10.1038/s42255-023-00928-2 #IRBScience

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Brant Bassam @BrantBassamPhD

2 years ago

We’re all wondering what the future of #spatialtranscriptomics (ST) has in store. Well, I think the near future will look a lot like the new 6000-plex dataset reviewed here (link to the original source at the end of this post). SAMPLE An entire 100 mm² intact 5 µm FFPE section…

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IRB Barcelona @IRBBarcelona

2 years ago

🧬Researchers decipher mechanism by which the MAF protein promotes #BreastCancer #metastasis. ✍️Led by @RogerGom1 in collab @CRGenomica @IRSJD_info @sheffielduni @URSAchemlab @FunGenCore. 📰@NatureCellBio ➡️bit.ly/40ulTLC 📌DOI:10.1038/s41556-023-01281-y #IRBScience

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catharine.aquino @CatharineAquino

2 years ago

Are you passionate about genomics technologies, highly team-oriented, highly motivated, flexible, organized, adaptable and thrive in environments with minimal supervision? We have an open position in my team for a Junior Expert in Spatial Transcriptomics at the @FGCZ_EN !