Jen Guthrie @JenLGuthrie
Assistant Prof @WesternU | Adjunct Scientist @PublicHealthON | Canada Research Chair in Pathogen Genomics and Bioinformatics | Epidemiology | TB | AMR | MRSA guthrielab.com London, Ontario Joined March 2009-
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"We have to try and beat bacteria at their own game.” Idowu Olawoye (@idowuolawoye) uses DNA and #AI to treat antimicrobial resistance. The @SchulichMedDent microbiologist is a @CIHR_IRSC Research Excellence, Diversity & Independence Award recipient. news.westernu.ca/2024/04/idowu-…
Excellent Guthrie Lab grad student showing at today's 𝐖𝐞𝐬𝐭𝐞𝐫𝐧 𝐑𝐞𝐬𝐞𝐚𝐫𝐜𝐡 𝐅𝐨𝐫𝐮𝐦. Posters by Jishnu Talukdar, Caitlin Howard and Emily Boyko @westernsogs @westernuMNI @westernuepibio #ResearchPosters
🚨👇Nice work on Mtb pangenome
OMG this week in microbiology (TWIM) podcast 303 (microbe.tv/twim/) talks about our CRyPTIC project to sequence ~12,000 M. tuberculosis isolates from 23 countries and obtain quantitative resistance phenotypes for 13 drugs. (Paper here: journals.plos.org/plosbiology/ar… ).
🎉 Celebrating Success! 🏆Delighted to share that Postdoctoral Associate Dr. Idowu Olawoye has been honored with a @CIHR_IRSC REDI Early Career Transition Award! Congratulations, @idowuolawoye - your success is well-deserved! 👏🎉#DiversityMatters #ResearchExcellence #ProudMentor
🎉 Celebrating Success! 🏆Delighted to share that Postdoctoral Associate Dr. Idowu Olawoye has been honored with a @CIHR_IRSC REDI Early Career Transition Award! Congratulations, @idowuolawoye - your success is well-deserved! 👏🎉#DiversityMatters #ResearchExcellence #ProudMentor
Thanks to @ASMicrobiology for sponsoring @LandonGetz for Young Ambassador Project Fund in support of student mixer event @CSM_SCM annual conference @CSM_SCM2024. Well done Landon! Trainees, we look forward to greeting you at student mixer and Postdoc meet and greet @CSM_SCM2024.
Looking forward to seeing everyone at CSM this summer!👇
BIGSdb v1.43.0 has been released. This version improves database logging of user access to the web interface and API. BIGSdb powers all the databases on @PubMLST. Release notes at github.com/kjolley/BIGSdb….
I went on @FrontBurnerCBC this week to talk about potentially-deadly invasive group A strep infections, why rates are rising in Canada and beyond, and what scientists speculate could be causing this grim trend. 🎧 Take a listen: podcasts.apple.com/ca/podcast/fro…
An excellent #OneHealth Seminar Series starts next week and if you're not in Vancouver that's ok you can join online 👇
An excellent #OneHealth Seminar Series starts next week and if you're not in Vancouver that's ok you can join online 👇
This is a well written article about how Journal impact factors are often misused, misunderstood, and can be used to game the system. Oh, and they can also perpetuate bias against scientists who don't have the "right" pedigree (that last point is mine). mcgill.ca/oss/article/me…
A new @WesternU @lawsonresearch study is shedding light on the connection between the #microbiome and kidney stones. “We found not only that those who got kidney stones had an unhealthy microbiome…but also that they were antibiotic resistant.” @Our_MicroBiome @kait_al
A new @WesternU @lawsonresearch study is shedding light on the connection between the #microbiome and kidney stones. “We found not only that those who got kidney stones had an unhealthy microbiome…but also that they were antibiotic resistant.” @Our_MicroBiome @kait_al
Huge congrats to Guthrie Lab MSc student Emily Boyko for receiving the Carol Buck Graduate Student Scholarship - awarded annually to a high achieving graduate student in the Dept of Epidemiology and Biostatistics. Amazing achievement Emily!!! @westernuepibio @SchulichMedDent
It hasn't been long since I last quantified @nanopore accuracy, but the release of Dorado v0.5.0 demanded another test: rrwick.github.io/2023/12/18/ont… Biggest improvement I've seen in a while! Most of these ONT-only bacterial genomes are now >Q60 😲
🚨Our new manuscript details the work of the @pha4ge Data Structures working group to standardize the type & structure of metadata submitted to the INDSC - simplifying protocols across public health pathogen genomic surveillance. Great job by all, esp @DoctorRuth @griffiemma
🚨Our new manuscript details the work of the @pha4ge Data Structures working group to standardize the type & structure of metadata submitted to the INDSC - simplifying protocols across public health pathogen genomic surveillance. Great job by all, esp @DoctorRuth @griffiemma
🎉 Exciting! Dr. Idowu Olawoye has been honored with a Western Postdoctoral Fellowship! 🏆🔬 His dedication to research and innovation continues to inspire. Congratulations, @idowuolawoye uwo.ca/research/fundi… @SchulichMedDent @westernuMNI
Interested in understanding the role of TB Genomics in public health? Here is a resource for you 👇
Interested in understanding the role of TB Genomics in public health? Here is a resource for you 👇
Wondering how to submit a new pathogen genome to INSDC? Or, how to build a dashboard to track the evolution of a diverse set of pathogens within the INSDC?🤔 Enter the Pathogen DOM, an open protocol for standardized data sharing. osf.io/5cyu4
John McCormick @Superantigens
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224 Followers 332 Following Graduate student# Microbiology# Bioinformatics..........Manuel Alain Ramirez .. @MarsBioinfoperu
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766 Followers 324 Following Bioinformatics Scientist @ Theiagen Genomics| PhD in computational biology | enjoys metagenomic nerd talk | gets mean when hungryCIHR-ICRH / L'ISCR de.. @CIHR_ICRH
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420 Followers 173 Following Infectious diseases, medical microbiology and virology @sunnybrook, @uoftmedicine and @LMP_UofT. Views my own.Ishi Keenum @ishi_keenum
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67 Followers 303 FollowingNick Waglechner @NWaglechner
126 Followers 224 Following Microbe enthusiast | Genomic epidemiology | @OntarioGenomics-@CANSSIOntario Postdoctoral Fellow in Genome Data Science | @SinaiHealth #LTRI Words are my ownShawn Lewenza @DrShawnL
1K Followers 1K Following Professor of Microbiology. Open and online education, Athabasca University. Research partner, University of Calgary.Emily Smith @EmilyAnne_Smith
2K Followers 458 Following Molecular epidemiologist | Public Health & Infectious Diseases | Bringing bioinformatics to non-bioinformaticiansAustralian Pathogen G.. @AusPathoGen
281 Followers 61 Following Integrating #pathogengenomics into #PublicHealth @CDGN_Australia Coordinated out of @unimelbBK Titanji @Boghuma
22K Followers 1K Following Science, Medicine, & Global Health. I bet on myself and I double down😊. @titanji.bk on https://t.co/a3ylHjB1nq, https://t.co/W9XPqhiy6w , https://t.co/CkGH8LbKezGenSpectrum @GenSpectrum
1K Followers 21 Following We develop open web APIs and dashboards for genomic epidemiology. Monkeypox - https://t.co/ehHkFkSaKl and SARS-CoV-2 - https://t.co/feDGaT1cNxDon Vinh @DonaldVinh
8K Followers 514 Following Infectious disease MD. Medical Microbiologist. Clinician-Scientist (Inborn Errors of Immunity). Clinical section head (ID-Heme/Onc/Transplant). FellowCIS. FIDSAOpen Forum Infectious.. @OFIDJournal
12K Followers 16 Following Open Forum Infectious Diseases publishes clinical, translational, and basic research in a fully open access, online journal. An official journal of @IDSAinfoThe Epidemiologist R .. @epiRhandbook
4K Followers 100 Following Written by and for applied epidemiologists | Available free at https://t.co/WjrpSoaXqh | Used 1.8 million times by 600k people | Produced by @appliedepiJulian Parkhill @JulianParkhill
889 Followers 101 Following Research @CamVetSchool, @Cambridge_Uni. Pathogen Genomics and Evolution group: @PathGenEvoCam Doing genomics since before most of you were born.Rebecca Glover @glover_lshtm
945 Followers 694 Following Assistant Prof @LSHTM (joint lead -Pharmacy First eval) Likes: walking, ballet, dogs. Dislikes: hayfever, mushrooms, the kleptocracy. @rebeccaglover on B!ue &kyVery high interest at the keynote lecture by @DrKatHolt on genomics pathogen surveillance at #ESCMIDGlobal supported by @ESGEM_ESCMID
Pleasure to attend and host the Bhagi Singh Award session at the 36th #CSI2024 conference in Banff! Special thanks to @AjithaT4 & @CantonJohnathan for highlighting excellence in #ECR research and to the fantastic organizing committee for partnering with @CIHR_III. @MarkusGeuking
"We have to try and beat bacteria at their own game.” Idowu Olawoye (@idowuolawoye) uses DNA and #AI to treat antimicrobial resistance. The @SchulichMedDent microbiologist is a @CIHR_IRSC Research Excellence, Diversity & Independence Award recipient. news.westernu.ca/2024/04/idowu-…
Congratulations, Dr. Sener! @AlpSener2
Congratulations to #SchulichMedDent professor Dr. Alp Sener (@AlpSener2) on being named the inaugural Andrew Lazarovits Chair in Immunobiology and Transplantation at @WesternU and @LHSCCanada. brnw.ch/21wIHpr
Finally meeting @JenLGuthrie at @CIHR_III’s New Investigator Forum. 🎉
Fantastic to see @BenjaminHowden honoured as one of Australia's top 10 researchers by the @nhmrc 👏 Recognised for his significant contributions implementing genomics into national public health response to infectious diseases. doherty.edu.au/news-events/ne… @UniMelbMDHS @TheRMH
Our (TB) guidance document is designed to offer direction for those engaged in bioinformatics analyses, pointing them towards the pertinent knowledge and tools needed. Read More Here: pha4ge.org/articles/world…
Thank you to all the dedicated individuals who have contributed so far Sara Rey - @PublicHealthW @MarcNiebel - @BelfastTrust @DrEmmaDoughty - @theiagen @pvanheus - @SANBI_SA Catie Williams - @PublicHealthW @TCalvertJoshua - @SANBI_SA @JenLGuthrie - @WesternU #WorldTBDay
I’m honoured to be among this year’s recipients of the EPIC Future Leaders Prize! Thank you to @UofTEPIC for this distinction and for recognizing my #PhD work on HPV vaccines in gay and bisexual men. @UofT_dlsph @MAP_Health
We are beyond excited to announce the winners of our 2024 Future Leaders Prizes! 🎉🎉 These 4 young researchers are recognized for their research excellence and impact, and their leadership in advocacy, mentorship and science communications. Read more: bit.ly/4aldUnQ
The pangenome of Mycobacterium tuberculosis is here! Great work driven by @Mabi_Behruznia with crucial inputs from @maxgmarin @MahaFarhat @JThomas_CoNS and @blackpassiflora biorxiv.org/content/10.110…
First step in a community project to provide a uniformly assembled, annotated and searchable set of bacterial genomes, our preprint on our initial release of 1.9 million genome assemblies+taxonomic estimates. (figure compares with previous 661k dataset) biorxiv.org/content/10.110…
Webinar Announcement 📌 27 March 2024 📅 16:00 - 17:00 UTC ⏰ Best Practices for Public Health #Bioinformatics Pipelines🧬💻 Speaker: @kevinlibuit - @theiagen🎙️ Registration: us06web.zoom.us/webinar/regist… #PHA4GE #PublicHealth #Genomics
👏 Congratulations to Dr. Arinjay Banerjee (@sci_questions) for @CIHR_IRSC funding on two projects: (1) Understanding how bats 🦇 control virus infections, and (2) why #MERS causes more severe disease in humans than another #coronavirus SARS-CoV-2. #CIHR @usask @usaskResearch
OMG this week in microbiology (TWIM) podcast 303 (microbe.tv/twim/) talks about our CRyPTIC project to sequence ~12,000 M. tuberculosis isolates from 23 countries and obtain quantitative resistance phenotypes for 13 drugs. (Paper here: journals.plos.org/plosbiology/ar… ).
This is cool from @jaredtsimpson - recall of up to 96% from 40X @nanopore WGS on tumour samples... might have to make it's way into the @beggs_lab Nanopore sequencing pipeline. biorxiv.org/content/10.110…
I've reached the point in the grant writing process where I have a complete and polished draft. Which means I'm also at the point where I am second-guessing every aim, every experiment, & every word in the proposal...and every life choice that led me to pursue science as a career
Many congratulations to Idowu Olawoye (@idowuolawoye) at #WesternU, who is also a Western Postdoctoral Fellowship Program Scholar! #PurpleAndProud
Beginning a research faculty career is not easy and systemic barriers make it harder. Today, the #GoC announced the recipients of the first-ever CIHR Research Excellence, Diversity, and Independence (REDI) Early Career Transition Award. canada.ca/en/institutes-…
We are incredibly proud to officially announce the results of the inaugural CIHR Research Excellence, Diversity, and Independence (REDI) Early Career Transition Award program!
Beginning a research faculty career is not easy and systemic barriers make it harder. Today, the #GoC announced the recipients of the first-ever CIHR Research Excellence, Diversity, and Independence (REDI) Early Career Transition Award. canada.ca/en/institutes-…
Thanks to @ASMicrobiology for sponsoring @LandonGetz for Young Ambassador Project Fund in support of student mixer event @CSM_SCM annual conference @CSM_SCM2024. Well done Landon! Trainees, we look forward to greeting you at student mixer and Postdoc meet and greet @CSM_SCM2024.