Nucleosome papers 📚 NucPosDB database @Nucleosome_Bot
Publications about nucleosomes. Maintained by @TeifLab. Also see @TF_binding_bot, @CTCF_papers, @cfDNA_papers, @generegulation. @[email protected] generegulation.org/nucposdb Joined August 2015-
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We have a postdoctoral opening for a researcher with experience in bioinformatics of DNA sequencing and machine learning to work on the development of new methods for cancer diagnostics related to nucleosomes, chromatin and more jobs.ac.uk/job/DMK060/sen…. Apply by 21st April 2025!
Nucleosome condensate and linker DNA alter chromatin folding pathways and rates [Qiu et al, 2024] biorxiv.org/content/10.110… ▶️residue-level coarse-grained models; non-Markovian dynamics ▶️10n bp DNA linker lengths favor zigzag fibrils ▶️10n+5 bp chromatin loses unique conformations
Chromatin architecture mapping by multiplex proximity tagging [Delamarre et al. 2024] biorxiv.org/content/10.110… ▶️Nucleosome maps in 3D with Proximity Copy Paste (PCP) ▶️Connectivity of nucleosomes in S. cerevisiae ▶️Chromatin is predominantly organized in regular nucleosome arrays
Acute multi-level response to defective de novo chromatin assembly in S-phase (Dreyer et al., 2024) cell.com/molecular-cell…
1/n Looking into history of "fragile nucleosomes". The term was introduced in Xi et al, 2011 genome.cshlp.org/content/21/5/7……. But before that, MNase-sensitive nucleosomes were known as "labile nucleosomes", since 1970s academic.oup.com/nar/article/6/…. This term then continued into the NGS era
Chromatin Buffers Torsional Stress During Transcription biorxiv.org/content/10.110… [Jin Qian, Lucyna Lubkowska, Shuming Zhang, Chuang Tan, Yifeng Hong, Robert Fulbright, James Inman, Taryn Kay, Joshua Jeong, Deanna Gotte, James Berger, Mikhail Kashlev, Michelle Wang]
CTCF binding landscape is established by the epigenetic status of the nucleosome, well-positioned relative to CTCF motif orientation biorxiv.org/content/10.110…
Our new CTCF breakthrough ms has been posted today at doi.org/10.1101/2024.0… with the following Graphical Abstract:
Our new CTCF breakthrough ms has been posted today at doi.org/10.1101/2024.0… with the following Graphical Abstract: https://t.co/AwIJZI3gn3
DNA flexibility regulates transcription factor binding to nucleosomes dlvr.it/TCkpV0
Hurry up! Last day to submit abstract for "Genomics in Ageing and Disease" (Colchester, 16th September). Free Registration! Talks by @Peter_Fraser1, @_parker_aim, @GabriellaFicz, @EnrightAnton, @R_Rahbari, @ozgendeniz_, @jordanatbell, @sj_marzi & Essex PIs gate.essex.ac.uk
Single-nucleosome imaging reveals principles of transient multiscale chromatin unfolding triggered by histone ADP-ribosylation at DNA lesions dlvr.it/TCZn9R
The registration deadline for our FREE conference in Colchester is prolonged until 1st September. The conference itself is on 16th September. Short talk slots available, hurry up!
The registration deadline for our FREE conference in Colchester is prolonged until 1st September. The conference itself is on 16th September. Short talk slots available, hurry up!
Impacts of nucleosome positioning elements and pre-assembled chromatin states on expression and retention of transgenes dlvr.it/TCCv4G
FACT-(H3-H4) complex stimulates Pol activity to coordinate DNA synthesis with nucleosome assembly dlvr.it/TBhRty
1/ 🤔 Do #chromatinlooping-mediated promoter-#enhancer interactions drive gene expression? Or is the local enrichment of transcription factors into hubs/#condensates the key factor? Our AC/DC model of gene regulation at bioRxiv doi.org/10.1101/2024.0… provides a new view on this.
We have an opening for a three-year postdoctoral position for a researcher with expertise in machine learning and genome bioinformatics, to work on cancer diagnostics (liquid biopsies). Please apply here: vacancies.essex.ac.uk/tlive_webrecru…
Determining mesoscale chromatin structure parameters from spatially correlated cleavage data using a coarse-grained oligonucleosome model dlvr.it/TBDHZZ
Registration (free!) and abstract submission now open! Please, spread the word. gate.essex.ac.uk
We are organising a conference "Genomics in Ageing and Disease", 16th September 2024, University of Essex, Colchester. More details soon gate.essex.ac.uk
We are organising a conference "Genomics in Ageing and Disease", 16th September 2024, University of Essex, Colchester. More details soon gate.essex.ac.uk
nucMACC: An MNase-seq pipeline to identify structurally altered nucleosomes in the genome science.org/doi/full/10.11… #FragileNucleosome github.com/uschwartz/nucM…
Patrick Cramer @mpgpresident
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Victor V. Lobanenkov @boris_ctcf
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TF binding papers �... @TF_binding_bot
4K Followers 10 Following Papers on transcription factor binding #TFbinding. Maintained by @TeifLab. Also see @nucleosome_bot, @CTCF_papers, @DNAbinding, @cfDNA_papers, @generegulation
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TF binding papers �... @TF_binding_bot
4K Followers 10 Following Papers on transcription factor binding #TFbinding. Maintained by @TeifLab. Also see @nucleosome_bot, @CTCF_papers, @DNAbinding, @cfDNA_papers, @generegulation
Teif Lab @TeifLab
3K Followers 2K Following Teif lab at @uni_of_essex. We work on nucleosomes, chromatin, TFbinding, CTCF, cfDNA. Find us at 🐘 and 🦋. [email protected]; [email protected]
DNAMethylationPapers @DNAmPapers
701 Followers 8 Following PubMed & BioRxiv Bot sharing papers on #DNAMethylation 🧬📑@Olivia_A_Grant
Cancer epigenetics pa... @epicancerpapers
1K Followers 11 Following Literature bot: cancer epigenetics papers/preprints. Maintained by @TeifLab. Also see @cfDNA_papers, @DNAbinding, @CTCF_Papers, @TF_binding_bot, @Nucleosome_Bot
cfDNA papers 📚 Nuc... @cfDNA_papers
621 Followers 10 Following Papers on cell-free DNA (#cfDNA). Maintained by @TeifLab. Also see @nucleosome_bot, @CTCF_papers, @DNAbinding, @TF_binding_bot @generegulation
DNA-binding drugs📚 @DNAbinding
671 Followers 20 Following PubMed bot reporting DNA-drug and DNA-ligand binding. Maintained by @TeifLab. Also see @TF_binding_bot, @Nucleosome_Bot, @CTCF_Papers, @generegulation
CTCF Papers 📚 @CTCF_Papers
3K Followers 9 Following PubMed bot reporting all CTCF papers. Maintained by @TeifLab. Also see @TF_binding_bot, @Nucleosome_Bot, @generegulationTrends for United States
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