Sara Simmonds 🧬 @SeSimmonds
Staff Computational Biologist @cziscience | PhD Biology | Follow for the latest in #compio related to #cellbio #AIxBio linkedin.com/in/sara-simmon… Boston, MA Joined July 2012-
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🚨 Just dropped: A powerful AI model to explore cells. Meet TranscriptFormer — trained on 112M cells from 12 species. It uncovers gene expression patterns across evolution and can simulate biology it’s never seen before. Learn more at: czi.co/4jtkVIf
What a great summary!
📢 Exciting update from CZ CELLxGENE now supports data from an expanded range of organisms beyond human and mouse. This is just the beginning—we're continuously adding support for more organisms. 🪰🐟🪱🐷🐰🐵🦍 cellxgene.cziscience.com/docs/032__Cont…
“The Billion Cells Project will help clarify our understanding of the fundamental biology underpinning human health + disease while supercharging efforts at the intersection of AI & biology.” - @JCoolScience Learn more about the project czi.co/4hBZ5kM
Virtual cell models have the potential to transform biological research. Today @ChanZuckerberg released an initial set of models, including scGenePT and SubCell, designed to be easy to run and build upon. This is a really exciting time in biology. czi.co/4g1jTSa
I'm excited to announce a tenure track faculty position in conservation genomics in EEB @UCLA! We're looking for candidates who use genomic tools to study evolutionary processes related to conservation. Note, the actual application deadline is Nov 29. recruit.apo.ucla.edu/JPF09875
🚨Big news! Five years in the making, our Zebrahub paper is now published in #Cell 🎉. We’ve built a timecourse atlas of zebrafish embryonic development, combining #scRNAseq data and #lightsheet live imaging, and delved deep into the dynamics of key progenitors.…
📡🧵 Excited to release two #bioRxiv preprints! The first preprint is: "Zebrahub-Multiome: Uncovering Gene Regulatory Network Dynamics During Zebrafish Embryogenesis" doi.org/10.1101/2024.1… We present a comprehensive time-resolved single-cell multiomic atlas of zebrafish…
📡🧵 Excited to release our preprint: Ultrack: Pushing the Limits of Cell Tracking Across Biological Scales doi.org/10.1101/2024.0… A tour-de-force by @jobragantini, #Ultrack is a versatile, highly accurate, and fast ILP-based cell tracking software for 2D, 3D, and multicolor…
Spatial mapping provides key insights into tissue architecture, gene expression + key patterning events in development & disease. Explore spatial transcriptomics datasets in seconds with CZ #CellxGene by applying the Visium and/or Slide-seqV2 filters bit.ly/3XlTS7T
Exciting to see this out! A collaborative effort with @cziscience and @nanopore to offer the research community a free, easy-to-use pipeline for metagenomic analysis of complex microbial communities without the need for coding or computing resources biorxiv.org/content/10.110…
🚨 New preprint 🚨 Our CZ ID team + @czbiohub highlight the platform’s new antimicrobial resistant (AMR) module, which enables the detection of microbes & AMR genes in mNGS + whole-genome sequencing data 🧵
Yesterday I had the pleasure of sitting down with @StephenQuake, Amy Herr, @PepperMarion, and @JShendure for a special panel celebrating the launch of the Seattle Hub for Synthetic Biology. The passion, optimism, and commitment to open science was shared by the entire panel.…
📢Announcing the first-ever Chicago BioEngineering Conference! #CZBiohubCHI will bring together scientists in advanced sensing technologies, tissue & cell engineering, new omics approaches, and more. Don't miss it: Sept 30-Oct 1. (1/2) Learn more ⤵️ czbiohub.org/events/chicago…
The CZ Biohub Network is pleased to welcome the biomedical & AI expertise of 3 new members to our Board of Directors: 🌟Sam Altman/@sama, @OpenAI CEO 🌟Sam Hawgood, @UCSF Chancellor 🌟Mike Schroepfer/@schrep, Partner @gigascale View the full Board: bit.ly/3x6URQ3
#SingleCell researchers: did you know you can download + visually explore data from 1200+ datasets, spanning 789+ cell types through CZ #CellxGene Discover? bit.ly/3VraMCN
First single cell data in, by, from #Bangladesh! Contributing to the @humancellatlas! Just the beginning. More to come from nasopharyngeal mucosa with & without infections. Cant thank @ordovas_phd & team enough. Plus @shaleklab & of course our donors @cziscience @JCoolScience!
🧬 First days at the @czbiohub & @APHL Genomic Epidemiology course in the Republic of Georgia 🇬🇪 with the Lugar Center, @NCDCGeorgia & @CDCgov @CDCGlobal lab advisors from Central Asia. A motivated group focused on expanding genomic epidemiology in Eastern Europe & Central Asia.…
Want to hear about the latest updates/new techniques in single cell and spatial genomics? Check out the full agenda for our Single Cell Genomics Day on Friday, 3/29. All talks will be live-streamed (no registration required) at satijalab.org/scgd
AI for biology has the potential to help solve some of the most important problems facing our society. Scientific openness will be critical for our field to progress. As scientists engaged in this work, with more than 90 signatories across the world, we are advancing a framework…
Misha Kolmogorov @MishaKolmogorov
2K Followers 367 Following Tenure-track Stadtman Investigator at NIH/NCI @NCIResearchCtr. I like computational/cancer/metagenomics. The views are my own.
KaiTheFishGuy @FishGuyKai
25K Followers 3K Following Dr Yi-Kai Tea | Ichthyology Curator @austmus | @Sydney_Uni | Systematic ichthyology | Wildlife photographer | 🏳️🌈he/him
Alex Harkess @aeharkess
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Adam Phillippy @aphillippy
16K Followers 918 Following Finished a human genome, working on a few more 👨💻 Posts are my own
Sebastian S. Cocioba�... @ATinyGreenCell
30K Followers 9K Following Amateur 🌿 Biologist • Aspiring 🌺 Designer Researcher at Binomica Labs • Degreeless Heathen • Petunia Breeder • Open Lab Notebook: https://t.co/umYTLluuuw
Andrew Kern @pastramimachine
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Mick W@tson ↙️ @BioMickWatson
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Graham Coop @Graham_Coop
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Ola Wallerman🇸🇪 @OWallerman
900 Followers 523 Following PhD in genomics, expert in nanopore sequencing and bioinformatics
Jonathan Eisen @phylogenomics
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Dr. Nikki Traylor-Kno... @Cnidarians_Rock
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Joshua G. Schraiber @jgschraiber
8K Followers 7K Following Evolution, statistics, software, slacktivism. Once left a tenure track job, but trying to get one again. @docedge85 and @mwpen pay my bills
Dr. Sarah Carey @sarahbcarey
775 Followers 586 Following USDA NIFA postdoc in Harkess lab @ HudsonAlpha | Evolutionary genetics | Comparative genomics | Sex chromosome evolution | she/her
Dr. Solomon David @SolomonRDavid
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Scott P. Egan @scottpegan
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Emily Troyer 🐠🐟... @Fish_Fetisher
3K Followers 1K Following Postdoc at UofM My research explores the evolution and morphological diversification of living and fossil fishes.
Indie @Q4iQ4y32Bv1kh2
11 Followers 815 Following
Pavan Ramkumar @desipoika
371 Followers 767 Following ML for therapeutics discovery at https://t.co/khWvY1LLG9; formerly: ML for security at @balbixinc, computational neuroscience @KordingLab; PhD @AaltoUniversity
Marcin Cieslik @i000
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Mrunal @MrunalMhatre_
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Ceasar Schimmel @CeasarSchi49309
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Steve mavin @Stevemavin93274
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Roberto Ruiz-Cordero @drruizcor
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Totoresue @Totoresuev7RhF
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Grace E Coppinger @gracecoppinger
7 Followers 33 Following Ecology and Evolution PhD student for Washington University B.S. University of South Alabama @SSSTING_Lab
Adeyinka Gbadebo, PhD @GbadeboAdeyinka
20 Followers 182 Following Lecturer, Chrisland University, Nig. / Ecotoxicology / Genetics / Environmental Toxicology / Graphic Design/Printing/Agric-business. Call/wa me: 08138151100
JillField @TJ2SUH0YgmBXT
63 Followers 7K Following
Darwuel @Darwuel7kwi5
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EasonChan @EasonChan388421
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Emily @Cresthey3gP4ti
28 Followers 3K Following
Chiraez @Chiraezmv4JdV
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Mahdi Khadem @mahdikhadem95
16 Followers 181 Following PhD candidate in cell and molecular biology at FSU.
K.Koiwai @KKo1wa1
1K Followers 582 Following 🐟熱帯魚好きな水産研究者🦐 twitterでは実験手法などみなさんから勉強させてもらってます📝 1細胞解析/Drop-seq/水産学/共同研究募集中・ご連絡ください！ 面識のある方を除いて、学生さんはフォローしないようにしています。フォローしてって方は直接お知らせください😊 スポンジボブ大好き🧽
Merlin Lange @Merlin_Lange
951 Followers 655 Following Project Lead - Senior Staff Scientist at the Chan Zuckerberg Biohub (@czbiohub).
Max Shad @maxshadx
479 Followers 505 Following Senior Director of AI/ML Research Engineering, Kempner Institute @KempnerInst @Harvard , views are my own
Emily @emilycooke56
211 Followers 3K Following
Kenji Kamimoto @kenjikamimoto68
535 Followers 345 Following Professor | The University of Osaka, RIMD / OUBIC / PRIMe | Single-cell Biology, Systems Biology, Machine Learning 神元研究室では助教・特任助教・研究員を募集中です
James McInerney @jomcinerney
12K Followers 9K Following Chair in Evolutionary Biology and Head of Department. Open Science Advocate. Emigrant. #Python Machine learning. #Pangenomes 🇮🇪 #firstgen He/Him
YangJoon Kim @yangjoonkim
388 Followers 2K Following Computational Biologist @CZBiohub SF, PhD in Biophysics @UCBerkeley, working on single-cell multi-omics data analysis
Adrian Jacobo @Adrian_Jacobo
2K Followers 2K Following Group Leader @czbiohub. PhD in Physics turned into a quantitative biologist/zebrafish aficionado. Husband and father.
Luca Pinello @lucapinello
4K Followers 3K Following Computational methods for epigenetic, CRISPR genome editing and single-cell genomics. Associate Professor at MGH / Harvard Medical School. https://t.co/GouTKpGNR2
Ethan Armand @EthanArmand2
293 Followers 1K Following Bioinformatics PhD Student in the Ren lab at UCSD. Modeling gene regulation across species.
Joann @joann_horton16
286 Followers 3K Following
Phyllis @carlton26phylli
231 Followers 3K Following
QI ZHANG @QIZHANG344455
0 Followers 13 Following
Zhenghan Fang @fang_zhenghan
27 Followers 52 Following
Haotian Cui @HAOTIANCUI1
223 Followers 511 Following Building virtual cell. Large models for drug discovery. CS Ph.D. @UofT.
M0biusGene @vincent_alessi
171 Followers 296 Following I am a builder focused on AI, biotech/life sci. Multi-exit founder, 16+ patents, Forbes 30under, etc. Talk dirty to me about knowledge hypergraphs.
Karim Primov @KarimPrimov3
506 Followers 2K Following PhD candidate, Department of Integrative Biology, @UTAustin under Mikhaïl Matz and Mark Kirkpatrick. Coral population genomics and microbial ecology
Federico Marini 🦋@... @FedeBioinfo
971 Followers 933 Following Head of the Bioinformatics Group @ IMBEI@UnimedizinMainz, 🇮🇹 in 🇩🇪, loves 💻🧬🩸☀️🍹🌲🏖️ He/him, 🦋 https://t.co/4OCgAsuPqI
Arnab Bhattacharya @Arnab28122000
189 Followers 951 Following Curious techie battling my way through blockers. Open to Work
Kelly @ali_kelly64
295 Followers 3K Following
Lucille @lucille_rhine_
285 Followers 3K Following
Helga @coxhelga22
317 Followers 3K Following
Eva @eva_hopkins5
321 Followers 3K Following
Pauline @pauline35brown
299 Followers 3K Following
Jennifer @jennifer_buchne
1K Followers 3K Following
Susan @davis_susan17
358 Followers 3K Following
Oxford Nanopore @nanopore
66K Followers 9K Following 🌍Direct DNA/RNA analysis for anyone, anywhere 🧬Short to ultra-long reads in real-time for rapid insights 🔬Products for research use only
Alexander Wittenberg @AW_NGS
5K Followers 2K Following AgBio genomics expert. Exploring new horizons & disruptive innovations in DNA, RNA & Protein sequencing, single cell & spatial omics. 🌱 🥬 🍉 🍏 🫑 🌶 🌽🫐🍌🍓
Prosanta Chakrabarty @PREAUX_FISH
9K Followers 666 Following Hunter Chair for #SciComm, Curator of Fishes @LSU_MNS/Prof @LSU #Evolution, #TeamFish, @IchsAndHerps Past President, he/him #BLM ✊🏿 #ProtectTransKids
Misha Kolmogorov @MishaKolmogorov
2K Followers 367 Following Tenure-track Stadtman Investigator at NIH/NCI @NCIResearchCtr. I like computational/cancer/metagenomics. The views are my own.
KaiTheFishGuy @FishGuyKai
25K Followers 3K Following Dr Yi-Kai Tea | Ichthyology Curator @austmus | @Sydney_Uni | Systematic ichthyology | Wildlife photographer | 🏳️🌈he/him
Alex Harkess @aeharkess
5K Followers 2K Following Plant reproduction and evolutionary genomics. Faculty Investigator @hudsonalpha
Vince Buffalo @vsbuffalo
16K Followers 3K Following Scientist at IDM. ♥s epidemiology, running, probability+statistics, 🦀, fly fishing, backpacking. Author of book Bioinformatics Data Skills. All views my own.
Johannes Köster (@jo... @johanneskoester
3K Followers 93 Following Follow me on Bluesky instead: https://t.co/EXytM5VPhb Professor for Bioinformatics and Computational Oncology University of Duisburg-Essen
Adam Phillippy @aphillippy
16K Followers 918 Following Finished a human genome, working on a few more 👨💻 Posts are my own
Matthew Hahn @3rdreviewer
12K Followers 485 Following Population geneticist. Hobbies include: two kids.
Javier Santoyo @jsantoyo
6K Followers 908 Following Genomics & Bioinformatics Scientist at @EdinburghUni. Head of @edgenome | #Omics #NGS #LongReads | Views my own | Also @ https://t.co/TCJKasgyMt
Oded Rechavi @OdedRechavi
144K Followers 1K Following Epigenetic Inheritance, Neuroscience & anything biology-related TED: https://t.co/rcOm9TSTf5 Huberman Lab Podcast: https://t.co/xZTNlx9nbi
Sebastian S. Cocioba�... @ATinyGreenCell
30K Followers 9K Following Amateur 🌿 Biologist • Aspiring 🌺 Designer Researcher at Binomica Labs • Degreeless Heathen • Petunia Breeder • Open Lab Notebook: https://t.co/umYTLluuuw
Andrew Kern @pastramimachine
14K Followers 3K Following Evolution, population genetics, machine learning. rhythm section.
Mick W@tson ↙️ @BioMickWatson
29K Followers 3K Following Bioinformatics | (meta) genomics | Data science. Some politics. Views are all my own and do not represent past, current or future employer.
Albert Vilella @AlbertVilella
24K Followers 23K Following Next-Generation Sequencing, Single-Cell and Spatial Biology, Next-Generation Proteomics, Synthetic Biology, Liquid Biopsy, Accelerated Compute in Biotech.
Rasmus Kirkegaard @kirk3gaard
3K Followers 620 Following Staff scientist having fun with DNA seq and bioinformatics at #AlbertsenLAB. 🦋@kirk3gaard.bsky.social. COI : I am a @nanopore shareholder.
Graham Coop @Graham_Coop
19K Followers 2K Following Popgen @UCDavis. @[email protected] . Tweets, grammar, & spelling are my views only.He/him. #OA popgen book https://t.co/R6I2dcaEGf
Ola Wallerman🇸🇪 @OWallerman
900 Followers 523 Following PhD in genomics, expert in nanopore sequencing and bioinformatics
Jacob Schreiber @jmschreiber91
5K Followers 1K Following Asst Prof @UMassGCB, Board of Directors @NumFOCUS. Prev Guest Scientist @impvienna @StanfordMed @uwcse. Studying genomics, machine learning, and fruit.
Joshua Batson @thebasepoint
4K Followers 677 Following trying to understand evolved systems (🖥 and 🧬) interpretability research @anthropicai formerly @czbiohub, @mit math
Ryan York @ryanayork
359 Followers 127 Following scientist, research platform lead @ArcadiaScience musicianm (nalle mishima/ryan york) record label (https://t.co/3WBSAPLHfp)
Sam Rodriques @SGRodriques
15K Followers 193 Following Director and CEO at FutureHouse. Building an AI scientist. https://t.co/rQYoPOxsYo
Stephani Otte @Stephani_Otte
402 Followers 334 Following Science Officer Imaging Program @cziscience, neuroscientist, tech developer, science accelerator.
Alan Lowe @quantumjot
1K Followers 619 Following
Alan DenAdel @AlanDenadel
268 Followers 1K Following PhD in computational biology from @BrownCCMB @BrownUniversity. Previously at @illumina. he/him
Marinka Zitnik @marinkazitnik
8K Followers 226 Following Associate Professor at Harvard | Faculty @Harvard @KempnerInst AI | Faculty @broadinstitute @harvard_data | @ProjectTDC @AI_for_Science
James Zou @james_y_zou
16K Followers 120 Following @Stanford professor. Chan-Zuckerberg investigator. Sloan Fellow. Overton Prize. @togethercompute. AI for science + health.
Theodoris Lab @TheodorisLab
559 Followers 51 Following mapping gene networks to enable network-based therapeutic discovery in cardiovascular disease
Yanay Rosen @YanayRosen
599 Followers 383 Following CS PhD Student at Stanford. AI x BIO Website: https://t.co/F7vi7UkTaC
Yusuf Roohani @yusufroohani
2K Followers 421 Following Machine Learning & Systems Biology. ML Group Leader @arcinstitute. PhD @StanfordAILab
Crane Beach - The Tru... @CraneBeachMass
16K Followers 133 Following Crane Beach is one of 125 special places protected forever by @thetrustees, featuring miles of sandy beach, hiking trails, wildlife, & the wide blue ocean.
Elliot Hershberg @ElliotHershberg
16K Followers 934 Following Partner @AmplifyPartners, writing https://t.co/LSbi0EEiHU
Merlin Lange @Merlin_Lange
951 Followers 655 Following Project Lead - Senior Staff Scientist at the Chan Zuckerberg Biohub (@czbiohub).
Adam Freedman @afreedman405
45 Followers 90 Following bioinformatics data analysis monkey, evolutionary biologist, songwriter and so forth. currently works at Harvard University.
Alexander Karollus @AlexKarollus
127 Followers 35 Following
Theofanis Karaletsos @Tkaraletsos
4K Followers 2K Following Head of AI @cziscience | co-founder https://t.co/TIpJn8YQlg for atomistic simulation| probabilistic and deep ML
Patrick Hsu @pdhsu
45K Followers 3K Following co-founder @ArcInstitute, @BerkeleyBioE professor | researcher & investor in genome editing, biotech, AI | 🇨🇦 @harvard @broadinstitute @editasmed, Fast Grants
Eric Nguyen @exnx
3K Followers 484 Following Co-founder @ Radical Numerics, PhD @ stanford @HazyResearch @StanfordAILab
Yunha Hwang @Micro_Yunha
4K Followers 1K Following Building genomic intelligence, Asst Prof @MITBiology, @MITEECS, @MIT_SCC, Chief Scientist @tatta_bio https://t.co/gF8HeJo5hU
Peter Koo @pkoo562
2K Followers 845 Following Associate Professor @CSHL, advancing deep learning for genomics
YangJoon Kim @yangjoonkim
388 Followers 2K Following Computational Biologist @CZBiohub SF, PhD in Biophysics @UCBerkeley, working on single-cell multi-omics data analysis
Adrian Jacobo @Adrian_Jacobo
2K Followers 2K Following Group Leader @czbiohub. PhD in Physics turned into a quantitative biologist/zebrafish aficionado. Husband and father.
Tess van Stekelenburg @velvetatom
5K Followers 1K Following 🚀ing up the future | partner @Lux_Capital. prev comp neuroscience research @oxford + bio @ucl.
OpenBioML @openbioml
4K Followers 5 Following A collaborative research laboratory at the intersection of machine learning and biology. Join us here: https://t.co/4GidJOvaV4
Luca Pinello @lucapinello
4K Followers 3K Following Computational methods for epigenetic, CRISPR genome editing and single-cell genomics. Associate Professor at MGH / Harvard Medical School. https://t.co/GouTKpGNR2
Walden Pond State Res... @waldenpondstate
14K Followers 28 Following Effective May 16th, 2025, hrs.: 5AM - 7:30PM, daily. Capacity info on DCR Park Alerts: https://t.co/udYvaVq3zA or by calling. Restrooms in Visitor Center.
The Trustees @thetrustees
13K Followers 2K Following We love the outdoors. We love Massachusetts’ special places. And we celebrate & protect them – for everyone, forever!
Maria Brbic @mariabrbic
2K Followers 223 Following Assistant Professor of #computerscience and #lifesciences at @EPFL @ICepfl @epflSV Previously @Stanford #AI #compbio
WBZ | CBS News Boston @wbz
255K Followers 3K Following Breaking News, Weather, Sports, and some interesting extras from Boston's WBZ-TV.
NWS Boston @NWSBoston
122K Followers 162 Following Official Twitter Account for National Weather Service - Boston / Norton, MA. Details: https://t.co/35MkAit7f4
Manolis Kellis @manoliskellis
29K Followers 4K Following Dissecting disease mechanism. Single-cell, Epigenomics, Regulatory Genomics, Disease Genetics, Brain, Cancer, Metabolism. @MIT Prof, @MIT_CSAIL, @BroadInstitute
Jürgen Schmidhuber @SchmidhuberAI
163K Followers 0 Following Invented principles of meta-learning (1987), GANs (1990), Transformers (1991), very deep learning (1991), etc. Our AI is used many billions of times every day.
Yun S. Song @yun_s_song
4K Followers 226 Following Professor of EECS and Statistics @UCBerkeley. Mathematical and computational biologist. bsky handle: https://t.co/bW59tUBr8m
causalyAI @CausalyAI
1K Followers 449 Following Causaly is a biomedical research discovery tool that makes it simple to find and unlock key hidden evidence to make new predictions in biomedical science.
John Cumbers @johncumbers
17K Followers 2K Following Join @SynBioBeta - May 5-8, 2025 in San Jose: https://t.co/pL2XIEZH0R and read my weekly newsletter: https://t.co/MQhYwiU1Ls
SynBioBeta @SynBioBeta
52K Followers 4K Following Biologize the Future Join us May 4-7, 2026 - San Jose Convention Center, California https://t.co/bsgy1Ysw0h and sign up for our newsletter https://t.co/nH1N1NUHPH
Niko McCarty. @NikoMcCarty
37K Followers 1K Following Science. Biology. Progress. Founding Editor @AsimovPress / Subscribe!
Bits in Bio @bitsinbio
4K Followers 3 Following Interested in software in biotech? Join us on Slack: https://t.co/wH1nv3mHMK
Fei-Fei Li @drfeifei
519K Followers 1K Following Prof (CS @Stanford), Co-Director @StanfordHAI, Cofounder/CEO @theworldlabs, #AI #SpatialIntelligence #GenAI #computervision #robotics #AI-healthcare
Demis Hassabis @demishassabis
488K Followers 146 Following Nobel Laureate. Co-Founder & CEO @GoogleDeepMind - working on AGI. Solving disease @IsomorphicLabs. Trying to understand the fundamental nature of reality.
IEEE @IEEEorg
343K Followers 2K Following IEEE is the world’s largest technical professional organization and is a public charity dedicated to advancing technology for humanity. https://t.co/4lZf7Fh9xh
Shek Azizi @AziziShekoofeh
8K Followers 987 Following Staff Research Scientist @Google @GoogleDeepMind Opinions are my own.
Simona Cristea @simocristea
9K Followers 497 Following cancer genomics AI scientist; head of Data Science & AI and group leader @DanaFarber_Hale; research scientist @Harvard; phd @eth.🇷🇴🇸🇪🇨🇭🇺🇸Trends for United States
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