Spatial-Cell-ID @Spatial_Cell_ID
The Spatial-Cell-ID EquipEx+ platform provides equipment and expertise for single-cell spatiotemporal transcriptomics (aka #spatialtranscriptomics) spatial-cell-id.ens-lyon.fr Lyon, France Joined January 2022-
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🚨Preprint alert! tinyurl.com/2zkmynsd Did you ever dream of generating spatial maps of #enhancer activity at #singlecell resolution in a multicellular organism using massively parallel enhancer-reporter assays? Then spatial-scERA is the method for you!
Join us on June 12th for a workshop on scRNA-seq Registration (limited to 50 people) is free but mandatory spatial-cell-id.ens-lyon.fr/outreach-devel…
Looking for an internship in #SpatialOMICs #scOMICs? Look no further! 👇
Looking for an internship in #SpatialOMICs #scOMICs? Look no further! 👇
It's tomorrow!! We're expecting a full room for an exciting day of science and spatialOMICs discussions 🤩
It's tomorrow!! We're expecting a full room for an exciting day of science and spatialOMICs discussions 🤩
Join us in Lyon for the annual Spatial-Cell-ID day! We will welcome @DenisSchapiro (@UniHeidelberg) and Marco Grillo (@MatsNilssonLab @scilifelab) as keynote speakers. Full program available here: spatial-cell-id.ens-lyon.fr/outreach-devel…
🔔Proud and excited to share our latest preprint! We asked this simple question: do TADs really act as strong boundaries or can functional enhancer-promoter interactions be established across TAD boundaries? biorxiv.org/content/10.110… A 🧵on our main conclusions: (1/n)
Do you love #imaging, #spatialOMICs, and tech development? Come join the @Spatial_Cell_ID team @ENSdeLyon !
Using transcriptomic similarity and spatial coordinates, PASTE allows aligning and integrating spatial transcriptomics data generated from adjacent tissue slices. @RonZeira @benjraphael nature.com/articles/s4159…
I’m so happy to present our spatial multi-omics work out today! nature.com/articles/s4146… #spatial #transcriptomics #citeseq #smomics
Spatial-CUT&Tag! @ScienceMagazine, unfolding a new chapter of #spatialomics 🤗 . From my phenomenal postdoc @DengYanxiang of @YaleSEAS @YaleBme, @yalepathology @YaleMed @YaleCancer Thanks to awesome collaborators @GoCasteloBranco @marekbartosovic @PKukanja science.org/doi/10.1126/sc…
It's great to see our article about the multimodal omics analysis framework muon out! Many thanks to everyone who provided feedback along the way. 🙌 See a few highlights in the thread below.
It's great to see our article about the multimodal omics analysis framework muon out! Many thanks to everyone who provided feedback along the way. 🙌 See a few highlights in the thread below.
New Resource online now at Dev Cell: A single-cell Arabidopsis root atlas reveals developmental trajectories in wild-type and cell identity mutants - zpr.io/6nU8Z95mJ8qS
"Spatial components of molecular tissue biology", review wrote with @davidsebfischer @fabian_theis and Aviv Regev is out in @NatureBiotech. We outline biological questions and computational challenges in spatial analysis of tissues. 1/N nature.com/articles/s4158…
How to efficiently analyse & process large-scale spatial transcriptomics data from different techs? We've developed Spacemake that does this and much more biorxiv.org/content/10.110…
Power analysis for spatial omics | bioRxiv biorxiv.org/content/10.110…
Spatially resolved transcriptomics and its applications | Nice review from Prof. Mingyao Li's group @DrMingyaoLi Statistical and machine learning methods for spatially resolved transcriptomics with histology sciencedirect.com/science/articl…
How cool is it to be able to visualize multiresolution #InSituSequencing and #SpatialTranscriptomics images with millions of overlaying points from your phone browser!? 🔬📱 TissUUmaps 3 allows it: visit our gallery for more examples tissuumaps.github.io/gallery/
Optocoder: a computational tool that decodes spatially indexed bead arrays. Optocoder processes spatial transcriptomics microscopy images to extract bead locations and their barcodes (led by fantastic PhD student @nssenel at @N_Rajewsky lab) (1/4) biorxiv.org/content/10.110…
📢The Spatial-Cell-ID facility is looking for a bioinformatician! Do you love #singlecell and #spatialtranscriptomics? Want to be part of an exciting project with state-of-the-art equipment? Come join us @ENSdeLyon @UniversiteLyon @IGFLyon shorturl.at/ituN6
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