Yves Clément 💻🧬🇺🇦🇪🇺 @TwelveSharp
Assistant prof at @univ_paris_cite & @stemdevevo team at @IJMonod. Comparative genomics and bioinformatics. Paris, France Joined March 2012-
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Yves Clément 💻🧬🇺🇦🇪🇺 retweeted
📢 Happy to announce that Ensembl 115 and Ensembl Genomes 62 are out! This release features ~120000 new protein coding transcripts in human GRCh38, 2 new cattle, 7 new plants and 20 new metazoa! 🧬🐮 🫛🪲 Read more here ➡️ zurl.co/poyXM
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Yves Clément 💻🧬🇺🇦🇪🇺 retweeted
Yves Clément 💻🧬🇺🇦🇪🇺 retweeted
Happy RNA Day to those who celebrate! 🧪 It’s AUG 1: the day we Met 🤓
Yves Clément 💻🧬🇺🇦🇪🇺 retweeted
Biological foundation models have hit a plateau. Scaling isn't working as expected. Foundational concepts from evolutionary biology could have predicted this: 🧵 research.arcadiascience.com/pub/idea-phylo… [1/9]
Yves Clément 💻🧬🇺🇦🇪🇺 retweeted
#TalentCNRS 🥉| Flora Jay, entre génomes synthétiques et récits évolutifs, reçoit la médaille de bronze du CNRS. ➡️ ins2i.cnrs.fr/fr/cnrsinfo/fl… 🤝 @LisnLab @CNRSIdFSud
Yves Clément 💻🧬🇺🇦🇪🇺 retweeted
Practically useful & biologically aligned benchmarks such as this one from @pkoo562 lab consistently show that all the overhyped annotation-agnostic DNA language models are actually terrible for transcriptional regulatory DNA in humans (mammals). 1/
Practically useful & biologically aligned benchmarks such as this one from @pkoo562 lab consistently show that all the overhyped annotation-agnostic DNA language models are actually terrible for transcriptional regulatory DNA in humans (mammals). 1/
Yves Clément 💻🧬🇺🇦🇪🇺 retweeted
Our work on "Evaluating the representational power of pre-trained DNA language models for regulatory genomics" led by @AmberZqt with help from @NiraliSomia & @stevenyuyy is finally published in Genome Biology! Check it out! genomebiology.biomedcentral.com/articles/10.11…
Our work on "Evaluating the representational power of pre-trained DNA language models for regulatory genomics" led by @AmberZqt with help from @NiraliSomia & @stevenyuyy is finally published in Genome Biology! Check it out! genomebiology.biomedcentral.com/articles/10.11…
Yves Clément 💻🧬🇺🇦🇪🇺 retweeted
And there you go. "Journal plagued with problematic papers, likely from paper mills, pauses submissions" science.org/content/articl…
Yves Clément 💻🧬🇺🇦🇪🇺 retweeted
The human transcription factor occupancy landscape viewed using high-resolution in situ base-conversion strand-specific ... biorxiv.org/content/10.110… #biorxiv_genomic
Yves Clément 💻🧬🇺🇦🇪🇺 retweeted
REPORTAGE. Polychètes, échinodermes… Les scientifiques du programme Atlas Sea s'attaquent à la Méditerranée l.franceinfo.fr/ra5
Yves Clément 💻🧬🇺🇦🇪🇺 retweeted
A dozen years ago (!) we had a big job exploring 7 ant #genomes 🐜🧬alongside some other insects (Simola et al. 2013 genome.cshlp.org/content/23/8/1…) ... look how far the field has come - congrats GAGA on these great comparative analyses of 163 ant 🐜🧬 genomes! cell.com/cell/fulltext/…
Yves Clément 💻🧬🇺🇦🇪🇺 retweeted
The evolution of gene regulatory programs controlling gonadal development in primates biorxiv.org/content/10.110… #biorxiv_evobio
Yves Clément 💻🧬🇺🇦🇪🇺 retweeted
Preprint on "Improving spliced alignment by modeling splice sites with deep learning". It describes minisplice for modeling splice signals. Minimap2 and miniprot now optionally use the predicted scores to improve spliced alignment. arxiv.org/abs/2506.12986
Yves Clément 💻🧬🇺🇦🇪🇺 retweeted
Chaque année, le CNRS récompense les femmes et les hommes qui ont le plus contribué à son rayonnement et à l’avancée de la recherche. Les médaillés d’argent, de bronze et de cristal individuels viennent d’être annoncés. 👏Félicitations ! 👉 cnrs.fr/fr/actualite/l… #TalentsCNRS
Looooooooooooool
Yves Clément 💻🧬🇺🇦🇪🇺 retweeted
One of the great failures of academic science has been the complete inability (disinterest?) to explain how it works… so many posts like this
One of the great failures of academic science has been the complete inability (disinterest?) to explain how it works… so many posts like this
Yves Clément 💻🧬🇺🇦🇪🇺 retweeted
What would happen to your data if 23andMe went bankrupt? A summary of a new NEJM paper from three US authors. news.harvard.edu/gazette/story/… 1/3
Yves Clément 💻🧬🇺🇦🇪🇺 retweeted
Manual versus automatic annotation of transposable elements: case studies in Drosophila melanogaster and Aedes albopictus, balancing ... biorxiv.org/cgi/content/sh… #biorxiv_genomic
Yves Clément 💻🧬🇺🇦🇪🇺 retweeted
our paper on ROS evolution and regeneration is now out @MolBiolEvol academic.oup.com/mbe/article/42…
our paper on ROS evolution and regeneration is now out @MolBiolEvol academic.oup.com/mbe/article/42…
Institut Jacques Mono... @IJMonod
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Maxim Greenberg @maxvcg
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jeblamarck.bsky.socia... @JebLamarck
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Emilie Dufour, (ælle... @_emiliedufour
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372 Followers 7K Following Founder at - https://t.co/nOMn0dzF8H Agentic AI teams for Advertising, Accounting, Management consulting, Private Equity, Manufacturing.
Patrice P. @tangente86
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SharonThornhill @ThornhillS71100
267 Followers 770 Following Buy Google Reviews Buy Google Reviews Buy Google Reviews Buy Google Reviews #BuyGoogleReviews #USa #UK #Newyork
Institut Jacques Mono... @IJMonod
4K Followers 1K Following Unité de recherche @CNRSbiologie @univ_paris_cite Recherche fondamentale en #biologie - Leading center for fundamental interdisciplinary research in #biology
Maxim Greenberg @maxvcg
6K Followers 1K Following Group leader @IJMonod. When I say "epigenetics" what I really mean is "DNA methylation". Posting now at 🦋 (https://t.co/H8WTRmjRq5)
Harmit S. Malik @HarmitMalik
43K Followers 7K Following Study genetic conflicts professionally. Try to avoid conflicts in personal life (with mixed results). @HutchBasicSci @fredhutch @HHMINEWS He/him
Vince Buffalo @vsbuffalo
16K Followers 3K Following Scientist at IDM. ♥s epidemiology, running, probability+statistics, 🦀, fly fishing, backpacking. Author of book Bioinformatics Data Skills. All views my own.
Camille Berthelot @ca... @CamLBerthelot
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Sylvain Deville ❄�... @DevilleSy
7K Followers 1K Following Still making fresh pasta every Sunday, just not tweeting about it anymore
Taupo @pierrekerner
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Cedric🧬➰🧬Fesc... @CedricFeschotte
8K Followers 2K Following Prof @Cornell, visiting Prof @epfl Come for the memes, stay for the transposon & virus stuff. Now at @cedricfeschotte.bsky.social
FX Coudert @fxcoudert
10K Followers 871 Following Senior researcher @CNRS, computational chemist, professor @PSL_Univ. First responder & instructor @CroixRouge. Now on https://t.co/BQwHVaQTyH
Andrew Kern @pastramimachine
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Matthew Hahn @3rdreviewer
12K Followers 485 Following Population geneticist. Hobbies include: two kids.
CNRS 🌍 @CNRS
224K Followers 2K Following Organisme public 🇫🇷 de recherche pluridisciplinaire, le Centre national de la recherche scientifique c'est 33 000 personnes qui font avancer la connaissance.
Lior Pachter @lpachter
47K Followers 2K Following Bren Professor of Computational Biology @caltech. Blog at https://t.co/FFQzhEsmhi. Tweets represent my views, not my employer's. #methodsmatter
DuharcourtLab @DuharcourtLab
567 Followers 257 Following Paramecium genome(s) afficionado; @IJMonod, Paris, France; @sandraduharcourt.bsky.social
Morgane Thomas-Cholli... @mthomaschollier
511 Followers 165 Following @[email protected] 👩💻 Ass Prof Bioinformatics @Biologie_ENS 👩🏫 co-leader @Genomique_ENS 👩🏫 adjunct dir @IFB_Bioinfo 👩co-dev @RSATools
Joshua G. Schraiber @jgschraiber
8K Followers 7K Following Evolution, statistics, software, slacktivism. Once left a tenure track job, but trying to get one again. @docedge85 and @mwpen pay my bills
Michael Eisen @mbeisen
73K Followers 13K Following I science & try to make science open. Tweets do not represent my employer's views, but are always correct. My conflicts of interest https://t.co/77P0LDdz6j.
Graham Coop @Graham_Coop
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Pierre Poulain @pierrepo
2K Followers 1K Following Associate prof @univ_paris_cite #bioinformatics @SfbiFr #python #openscience @SWHeritage ambassador #pedagogy 🦣 @[email protected]
Dr. Juliette @FerryDanini
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Javier Santoyo @jsantoyo
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Anshul Kundaje (anshu... @anshulkundaje
26K Followers 3K Following Federally funded academic research is the innovation engine of the US economy. Reform is welcome. Destruction will have long term consequences.
Victor Heurtier @VictorHeurt
202 Followers 698 Following MD Resident in #Oncology @Sorbonne_Univ_ @MedecineSU @APHP, PhD in #genetics | interest in #oncogenetics #molecularoncology #generegulation #stemcells #lncRNA
Jia-Xing Yue (岳家�... @iAmphioxus
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Rob Waterhouse also @... @rmwaterhouse
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Cheshire @Thatsregrettab1
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930 Followers 153 Following Genomic microbiology & phylogenetics. Opinions are my own. Lab postings at @daganlab.bsky.social
Gemma Martínez Redon... @Gemmaeling
238 Followers 294 Following Predoc researcher at @metazomics, @IBE_Barcelona. Unpuzzling the genomic 🧬 basis of terrestrialization in animals🦀🐙🐟🌊⏭🕷🐌🦇⛰ @gemmaeling.bsky.social
Sophie Teullet @sophieteullet
245 Followers 599 Following PhD, molecular evolution through genomics and metagenomics Member of @FemmesSciences Passionate about #SciComm She/her
Joana Meier @joana_meier
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290 Followers 49 Following Computational Biology @LCQB_UMR7238 - Protein Sequences in Structure/Function/Classification, Genome Structure, Ancient Genomes & Geometry of Logical Reasoning
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56 Followers 41 Following Journées ouvertes en Biologie, Informatique et Mathématiques | Juillet 8-11 | @Bordeaux 🔗 https://t.co/8GpmUmw96t
i-Bio Sorbonne Univer... @iBio_Sorbonne
214 Followers 135 Following Initiative from the Sorbonne Université Alliance to promote interdisciplinary research in Biology International PhD program![[Ran by: Laura Blanco-Berdugo]
The Dumont lab focus on the mechanisms that generate genetic diversity through the lens of evolution.](https://pbs.twimg.com/profile_images/1529162226447294464/LrdHUvyk.jpg)
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Alex Strudwick Young @AlexTISYoung
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cart0graf @cart0graf
4K Followers 290 Following french election maps and more 🇱🇧🇵🇸🇦🇲🇺🇦🇳🇨 @cart0graf.bsky.social
Patrice P. @tangente86
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29K Followers 26 Following An account full of silly science comics & occasionally irreverent blog posts. For new content, see our website or one of our other social media accounts.
Thibault Tubiana @ttubiana
596 Followers 338 Following Molecular Modeler | Postdoc at @I2BCParisSaclay | before @reuterlab @UiB | @Servier | PhD at @I2BCParisSaclay
Bioinformatics Advanc... @BioinfoAdv
4K Followers 675 Following A fully open access, peer-reviewed journal published jointly by Oxford University Press and the International Society for Computational Biology.
Aida Andrés @AidaAndres
1K Followers 579 Following Scientist, Evolutionary Biologist, Population Geneticist at UCL Genetics Institute. Genetic adaptation, balancing selection, aDNA, humans, primates and more.
Johannes Köster (@jo... @johanneskoester
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Johann Confais @JohannConfais
349 Followers 525 Following Bioinformatics @INRAE_URGI Interested in #Genomics, #Evolution, #Transposons, Repeat annotation, #Pangenomic, #KnowledgeGraph 🦋 @johannconfais.bsky.social
Fany Martinez Real @RealFany
738 Followers 437 Following Interested in evolutionary genomics of moles and in any other living creature! Group leader at @CABD_UPO_CSIC. Previous at @MPI_Molgen. Email: [email protected]
Valentin Loux @vloux
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BioinfOmics INRAE @bi... @Bioinf0mics
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Sandra Claret-dubreui... @ClaretDubr66443
2 Followers 4 Following
Institut universitair... @InstUnivFr
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Souhila Medjkane @MedjkaneSouhila
21 Followers 103 Following Teaching at @univ_paris_cite & @EURGENEPARIS. Researching how methylation signaling extends beyond histones @WeitzmanlabP @ParisEpigenetix
CNRGV - INRAE @CNRGV
531 Followers 431 Following The CNRGV provides innovative and efficient genomic tools to better analyse plant genomes #genomic #DNA #plant #biodiversity #biotechnology #greenbiotech
Paul Gardner @ppgardne
4K Followers 3K Following Bioinformatician. ex-Whāngārā. New Zealand/Aotearoa. A/Prof. Overly fond of RNA. Kayaking. Fishing.
antisense. @razoralign
16K Followers 66 Following Between language and causality, ephemeral echoes trace the edge of consciousness— intelligence is a transient footprints. https://t.co/5L9IhaBKH5
Wendy Bickmore @wendy_bickmore
5K Followers 76 Following Director of MRC Human Genetics Unit @mrc_hgu @EdinUniv_IGC - but tweeting in my own capacity. Supporter of fundamental science. Airedale terrier owner.
Benoît Perez-Lamarqu... @BPerezLamarque
317 Followers 474 Following @bperezlamarque.bsky.social Assistant Professor of Botany & Ecology at @UT3PaulSabatier. #microbiota #symbiosis #evolution #modeling #mycorrhiza
Paolo Caldarelli @caldarellip1
4K Followers 645 Following Postdoctoral Scientist at @Caltech. Embryo and synthetic embryo morphogenesis, microscopy, and biophysics. Alumnus @institutpasteur,@AarhusUni_int,@UninaIT.
Cédric Moisy @CedricMoisy
641 Followers 673 Following Researcher R&D. #Grapevine, #3D_imaging, #MRI, #Xrays, #trunk_diseases, plant breeding & selection. @vignevinfrance, UMT #GénoVigne
B. Duygu Özpolat, Ph... @biyolokum
5K Followers 46 Following Not here anymore. @biyolokum on bluerskies https://t.co/yMwSH3Smh8
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