Can Ergen @_canergen
Postdoc at @UCBerkeley and @UCSF. Co-mentored by @Yoseflab and @yimmieg Berkeley Joined November 2018-
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Important topic, but this is more of a quick-start guide. For cutting-edge research on LLM evals, see these papers using Prediction-Powered Inference to incorporate synthetic data and model predictions for narrower CIs. 👇 Gemini already knows about them!…
Important topic, but this is more of a quick-start guide. For cutting-edge research on LLM evals, see these papers using Prediction-Powered Inference to incorporate synthetic data and model predictions for narrower CIs. 👇 Gemini already knows about them!…
Excited to share our work on a new spatial-lineage platform for tumor evolution analysis led by very talented postdocs @MattG_Jones & @sundakao. A great collaboration with @JswLab @insitubiology @YosefLab. ❗️Matt is on the job market and he will be a wonderful colleague to have
Excited to share our work on a new spatial-lineage platform for tumor evolution analysis led by very talented postdocs @MattG_Jones & @sundakao. A great collaboration with @JswLab @insitubiology @YosefLab. ❗️Matt is on the job market and he will be a wonderful colleague to have
Big thanks to @_lazappi_ for being part of the first-ever #scverse2024 conference and for the amazing summary and sketchnotes! 🙌 It's always a pleasure to see charismatic people with even more charisma! Check out his fantastic summary here: lazappi.id.au/posts/2024-09-…
The first scverse community survey is LIVE!📋🐍🧑💻 Do you use or contribute to scverse tools for omics analysis? Your feedback will help us improve support resources and shape future community initiatives and events. Fill out the survey before Oct 15th 👉forms.gle/cJpTFJLkQ6SBsq…
First conference, first selfie with some of the incredible @scverse_team core and volunteers! Feeling so grateful to be part of this amazing community pushing the boundaries of single cell analysis. 🖤🤍 #scverse2024
Earlier this week we carried out a preliminary analysis of our first @10xGenomics Xenium prime (5,000 gene) run. We had designed this experiment to get a sense of how the prime chemistry performed compared to the Xenium V1 chemistry.
Earlier this week we carried out a preliminary analysis of our first @10xGenomics Xenium prime (5,000 gene) run. We had designed this experiment to get a sense of how the prime chemistry performed compared to the Xenium V1 chemistry.
I'm stoked to announce our new end-to-end framework for perturbation analysis! Our scverse advisory committee highlighted that a maintained and well-documented framework for perturbation analysis is missing. Pertpy is our attempt to satisfy this request biorxiv.org/content/10.110…
Somatic mutation tracing with single-cell data is a fairly niche but growing field. We can learn more from each other via open analyses and direct communication than waiting for published papers and journal peer reviews. Let’s make it happen. 8/n
Systematic comparison of sequencing-based spatial transcriptomic methods | Nature Methods nature.com/articles/s4159…
So proud of my intern @Rotem_Shalita for her work at the #AiHub on deciphering T cell homing signatures for optimized CAR T cell engineering for neurodegeneration!
🌟 Join me at #Scverse2024 for the "GPU-Accelerated Single-Cell Analysis with rapids-singlecell" workshop! 📍 Munich, Germany 🗓️ Sept 10-12 Don't miss out! Register now: [scverse.org/conference2024/] Explore the toolkit: [github.com/scverse/rapids…] @scverse_team
i am so excited about our open source inexpensive, sub-cellular capture, do-it-yourself Open-ST that transforms tissues into virtual tissue blocks in 3D - IDing pathways & gene programs driving phenotypes. a huge congratz to the team! cell.com/cell/abstract/…
Our @scverse_team zulip chat recently crossed 500 members. It's super cool to have so many developers and users in one place to discuss how to best move forward with all things scverse. Please consider joining: scverse.zulipchat.com
The end of an era! The PhD is now gone but everything I’ve learned and the people I’ve met will stay! What a nice reflection moment of the past years. I would do it all over again, alongside @larsjuhljensen. Thank you for everything!
We are looking for an Xarray community developer to work at @EarthmoverHQ to focus on building connections, both technical and social, between the Xarray project and the biomedical research community. jobs.gusto.com/postings/earth…
Truly happy to see this out @NEJM - translational work from @Tobias_B_Huber and my lab on autoantibodies in nephrotic syndrome with first author @hengel_f. Big thanks to @pi_ronco @mrins01 @moritz_lasse and all other collaborators! @UKEHamburg
Truly happy to see this out @NEJM - translational work from @Tobias_B_Huber and my lab on autoantibodies in nephrotic syndrome with first author @hengel_f. Big thanks to @pi_ronco @mrins01 @moritz_lasse and all other collaborators! @UKEHamburg
I'm super happy to see part of our lab's work out this week in Cell Systems. Emily Laubscher's work presents a compelling, deep learning-based solution for image-based spatial transcriptomics. cell.com/cell-systems/f…
@Severin_1991, @ivirshup, Ilan Gold and @felix_f0097 teamed up at the #OpenHackathons in Görlitz, hosted by @CASUSscience with @nvidia & HZDR support. They advanced a multi-GPU rapids-singlecell project, propelling bioinformatics innovation. Stay tuned for more with @OpenACCorg!
Today, May 12, is Mother’s Day. A special mother and brilliant mathematician was also born today: Maryam Mirzakhani, the first female Fields medalist (and to date, one of only two female Fields medalists). In her honor, her birthday, which is on May 12, is now celebrated as Women…
I’m beyond excited to share work from my PhD, co-led with Alicia Braxton, out today in Nature! We used CODA to map the anatomic and genomic properties of pancreatic cancer precursors. Led by the amazing @lauradelongwood and @deniswirtz ! nature.com/articles/s4158…
Sarah Mercy @sarah_merc87356
70 Followers 1K Following I'm a vetran looking forward to meet a good carering man of my dream
Uswirhgawp @Uswirhgawp6446
16 Followers 1K Following
Yullow3 @Yullow34
4 Followers 516 Following
Lakshmi E. Miller-Ved... @shelakshmenot
1K Followers 5K Following Proteostasis scientist formerly @ Relay Tx, MIT/Whitehead Institute, UCSF. Drug discovery, cell bio, biochem, protein engineering, biophysics, & structural bio
Luke Koblan @LukeKoblan
668 Followers 283 Following K99/R00 fellow at @WhiteheadInst in @JswLab | Helen Hay Whitney Fellow | Chemical Biology PhD @Harvard in @liugroup
Nicole_qye @NicoleQye
6 Followers 45 Following
Darethoret @DarethoretJg1
50 Followers 6K Following
Thatot @ThatotCyWr1
51 Followers 5K Following
Rüçhan Ekren 🦋 @... @RuchanEkren
99 Followers 190 Following Bioinformatics Data Scientist, Immception Lab @InfinityTLS Bioinformatics PhD Alumnus of @crctoncopole, @acibademuniv ,and @iyteedutr
Ringo @Ringooo______
0 Followers 492 Following
Lucia Ramirez @luci_rmz
275 Followers 287 Following Latina PhD student at @sangerinstitute and @Cambridge_Uni | Bsc in Genomics 🔬 @lcgunam | Interested in immunology, single-cell & IBD| She/her
Mahmudul hasan @HasanShauqi
62 Followers 431 Following Prev. Research Intern @Genentech/Roche, CS PhD Candidate @ Stony Brook University
Jack @leary_jack
184 Followers 414 Following third year biostatistics PhD candidate @UF. fixing it in prod. he / him.
Umut Kılık @KlkUmut
671 Followers 4K Following Postdoc @FMIScience - Turco Lab | Exploring endometrium regeneration & niche 🌱🩸 | Human model systems + single-cell genomics + evo-devo | PhD @GrayCampLab
FX MVS @BadFX75
123 Followers 692 Following CNS, PNS and macrophage lover. Interested in (pediatric) neurophysiology, epilepsy and immunology.
Peter-Meng @mengpengfei1
415 Followers 3K Following SUSTech |🌿🦠 Plant-Microbe Interactions | Bioinformatics Enthusiast | R & Python | AI in Biology
Rachel Thomas @math_rachel
93K Followers 818 Following math-rachel on 🦋 | fast ai co-founder | AI researcher who went back to school for immunology
David van Dijk @david_van_dijk
5K Followers 4K Following Assistant Professor @Yale @YaleMed @YaleCSDept | ML/AI comp bio
Lily Smith @LilySmith41110
29 Followers 1K Following
Soroor Hediyeh-zadeh @soroorh1
87 Followers 476 Following PhD student in Machine Learning and Computational Biology @helmholtzmunich and TUM. Previously @wehi_research, @unimelb
sina @sinabooeshaghi
4K Followers 1K Following bio/ai postdoc at uc berkeley. prev. phd from caltech and math + me from mit.
Artemy Bakulin @Kaiseki_Ou
50 Followers 328 Following PhD student in Computer Science @WeizmannScience | @YosefLab | Computational Biology & Deep Learning
Daniel Hanhart @DanielHanhart
2 Followers 8 Following
Rebecca Boiarsky @RBoiarsky
394 Followers 385 Following PhD student in machine learning for healthcare & biology at @MIT_CSAIL and @broadinstitute - on the industry job market! https://t.co/kYUwRbflco
Nancy Yacovzada @NancyYaco
560 Followers 3K Following Lady of python, machine learning & causality | PhD from @WeizmannScience | expertise in biomedical data science | red wine, spinning, trance music.
Belin @burrows_wheeler
12 Followers 258 Following AI/ML in Healthcare | Research assistant at @Saar_Uni
Theo @theodkatz
7 Followers 464 Following
T. San Phan @TgSanPhan
192 Followers 609 Following Azrieli Fellow @IdoAmitLab | PhD @unikonstanz (Brunnerlab) | Tolerance-Inflammation memory in epithelial barrier networks | Inflammation is the game
Luca Pinello @lucapinello
4K Followers 3K Following Computational methods for epigenetic, CRISPR genome editing and single-cell genomics. Associate Professor at MGH / Harvard Medical School. https://t.co/GouTKpGNR2
Mohamed Refaat Shoeb @shoeb_mo92
11 Followers 723 Following
Donghyun Lee @donghyunlee00
424 Followers 2K Following CS & Biology student @SeoulNatlUni | Research intern @gladyshev_lab
Jolene Ranek @JoleneRanek
567 Followers 580 Following Computational biology postdoc @Stanford @MikeAngeloLab | prev. @purvislab @comp_cy :). Multiplexed imaging, single-cell bioinformatics, cell fate dynamics
Nadav Yayon @YayonNadav
432 Followers 426 Following Postdoctoral fellow at the labs of Sarah Teichmann (Sanger), John Marioni and Virginie Uhlmann (EMBL-EBI). PhD in molecular and computational neuroscience.
ChloeXWang @ChloeXWang1
100 Followers 38 Following CS PhD student at the WangLab @ U of T. Working on ML applications in single-cell research.
Zhiping Weng @ZhipingWeng
1K Followers 314 Following Professor and Chair, Department of #Genomics and #ComputationalBiology @UMassGCB, UMass Chan Medical School @UMassChan, Li Weibo Chair in Biomedical Research
Marius Lange @MariusLange8
1K Followers 313 Following Postdoc between the @TreutleinLab @ETH_en and @dana_peer labs, developing ML tools for #singlecell genomics.
Albert Vilella @AlbertVilella
24K Followers 23K Following Next-Generation Sequencing, Single-Cell and Spatial Biology, Next-Generation Proteomics, Synthetic Biology, Liquid Biopsy, Accelerated Compute in Biotech.
Lukas Heumos @LukasHeumos
902 Followers 693 Following Research software engineer @laminlabs | Steering council @scverse_team | Postdoc at @fabian_theis lab
Adib Miraki @Adib_m_
216 Followers 1K Following Crafting stories from sequences - Bioinformatician works at Sanger institute 🇬🇧
Jan Engelmann @janxengelmann
204 Followers 534 Following 👋 @EllisforEurope PhD student in DL for single-cell genomics 🧬 with @fabian_theis & @fpcasale & @jmtomczak
Melanie Neeland @melanie_neeland
668 Followers 777 Following Team leader @MCRI_for_kids. Associate Professor, Paediatrics @UniMelbMDHS. Early life and respiratory immunology.
Konrad Hoeft @KonradHoeft
223 Followers 235 Following MD | Physician-Scientist @RWTH | #Nephrology | passionate about #fibrosis, #inflammation, #CKD, #HeartFailure, #scRNAseq
Kexin Huang @KexinHuang5
4K Followers 640 Following PhD Student @Stanford CS with @jure; AI + Biomedicine
Ansu Satpathy @Satpathology
4K Followers 862 Following immunotherapy, genomics, data, cancer @Stanford @Wing_VC @GladstoneInst @CartographyBio @Immunaitech @joinprox @parkerici
Charlie Marsh @charliermarsh
28K Followers 829 Following Building @astral_sh: Ruff, uv, and other high-performance Python tools. Prev: Staff engineer @SpringDiscovery, @KhanAcademy, BSE @PrincetonCS.
Paul Datlinger @PaulDatlinger
770 Followers 169 Following Scientist. Inventor of CROP-seq & scifi-RNA-seq. Associate Director at the Arc Institute | Virtual Cell Initiative
Jay Shendure @JShendure
14K Followers 317 Following Genomics technology developer. Developmental biology adult learner. Professor at @uwgenome @HHMINEWS @BrotmanBaty. He/him.
Sten Linnarsson @slinnarsson
9K Followers 299 Following Professor of Molecular Systems Biology at Karolinska Institutet. Moved to https://t.co/RutSid6fAz
Maxim Artyomov @maxim_artyomov
1K Followers 184 Following
Christoph Bock Lab @ ... @BockLab
3K Followers 1K Following Technology-driven biomedical research at CeMM Research Center for Molecular Medicine & MedUni Vienna #cancer #immunology #bioinformatics #AI #singlecell #CRISPR
Loïc A. Royer 💻�... @loicaroyer
6K Followers 2K Following Director of Imaging AI & Sr. Group Leader @czbiohub SF #zfish #devbio #zebrahub #SelfSupervised #AI #Lightsheet #Imaging co-creator of @napari_imaging
Arc Institute @arcinstitute
37K Followers 57 Following A new scientific institution for curiosity-driven biomedical science and technology.
Philip Giraldi @philipgiraldi
52K Followers 186 Following Former CIA Operations officer in Europe and Middle East, veteran, and PhD in European History https://t.co/yTCuey3HVg
Artemy Bakulin @Kaiseki_Ou
50 Followers 328 Following PhD student in Computer Science @WeizmannScience | @YosefLab | Computational Biology & Deep Learning
sina @sinabooeshaghi
4K Followers 1K Following bio/ai postdoc at uc berkeley. prev. phd from caltech and math + me from mit.
Ilya Korsunsky @ilyakorsunsky
734 Followers 531 Following Principal Investigator of Korsunsky lab at Brigham and Women's Hospital and Harvard Medical School. Computational biologist studying tissue inflammation.
Aaron Quinlan @aaronquinlan
17K Followers 1K Following All things genome mutation, software for genomic discovery. Chairperson of @UUGenetics Co-director, DELPHI Data Science Init (he/him) https://t.co/6GKjALLFfk
Samuel Hume @DrSamuelBHume
29K Followers 1K Following I’m a resident doctor, I write about progress in medicine
Luca Pinello @lucapinello
4K Followers 3K Following Computational methods for epigenetic, CRISPR genome editing and single-cell genomics. Associate Professor at MGH / Harvard Medical School. https://t.co/GouTKpGNR2
Clint Miller @clintomics
2K Followers 537 Following Human genomicist, Assoc Prof @UVA. Deconvolving complex cardiovascular diseases using systems genetics and single-cell omics.
Nadav Yayon @YayonNadav
432 Followers 426 Following Postdoctoral fellow at the labs of Sarah Teichmann (Sanger), John Marioni and Virginie Uhlmann (EMBL-EBI). PhD in molecular and computational neuroscience.
Rafael Kramann, MD Ph... @rkramann
3K Followers 2K Following Chair Department of Medicine 2 @RWTH #Nephrology #Fibrosis #HeartFailure #MultiOmics #twindad @ErasmusMC @MDIBL Founder Sequantrix
James Lee @Dr_James_Lee
2K Followers 244 Following Doctor, scientist, dad. Immunology, genomics and IBD. Tweets all my own!
The Colonna Lab @TheColonnaLab
4K Followers 113 Following We study innate immunity with a focus on ILCs, macrophages, and DCs. The account is led by trainees. @wusm_pathology @WUSTLmed
batuhan the fal guy @isidentical
9K Followers 608 Following just a chill guy. @fal. fastest inference on multiple diffusion models. Python core developer / @thePSF fellow
Nature Methods @naturemethods
151K Followers 1K Following Nature Methods publishes cutting-edge methods, tools, analyses, resources, reviews, news and commentary, supporting life sciences research. Tweets by editors.
Jan Engelmann @janxengelmann
204 Followers 534 Following 👋 @EllisforEurope PhD student in DL for single-cell genomics 🧬 with @fabian_theis & @fpcasale & @jmtomczak
Daniel Burkhardt @DBBurkhardt
1K Followers 310 Following Machine Learning Scientist @CellarityBio. Yale Genetics PhD with @KrishnaswamyLab. Core team at https://t.co/Io8MMFp8pl
Melanie Neeland @melanie_neeland
668 Followers 777 Following Team leader @MCRI_for_kids. Associate Professor, Paediatrics @UniMelbMDHS. Early life and respiratory immunology.
Julio Saez-Rodriguez @JulioSaezRod
2K Followers 362 Following Computational Biologist, Head of research @emblebi, part-time @UniHeidelberg, codirector @DR_E_A_M challenges. Low-activity account, mostly retweets @saezlab
Konrad Hoeft @KonradHoeft
223 Followers 235 Following MD | Physician-Scientist @RWTH | #Nephrology | passionate about #fibrosis, #inflammation, #CKD, #HeartFailure, #scRNAseq
Alejandro Tejada Lapu... @Alejandro__TL
277 Followers 541 Following @ELLISforEurope PhD Student in @fabian_theis lab. Interested in Machine Learning and biology. Spent time at @NOETIK_ai.
Kexin Huang @KexinHuang5
4K Followers 640 Following PhD Student @Stanford CS with @jure; AI + Biomedicine
Eric Topol @EricTopol
678K Followers 605 Following physician-scientist, author of SUPER AGERS https://t.co/ZEdooyyJpP and Ground Truths: https://t.co/YhatcBT0hA
Klebanoff_Lab @KlebanoffLab
3K Followers 2K Following A translational research lab @MSKCancerCenter focused on the immunobiology and therapeutic potential of genetically engineered #Tcells and #TCRs. Est.2016 @NYC.
Achille Nazaret @AchilleNazaret
97 Followers 0 Following
Shyam Prabhakar Lab @shyam_lab
2K Followers 496 Following Associate Director Spatial and Single Cell Systems @astar_gis. Genomics: algorithms, disease markers & mechanisms, genetic diversity [email protected]
Sikander Hayat @sikandhayat
1K Followers 4K Following Group Leader, Single-cell, Spatial omics Translational Data Science, co-founder; fibrosis, data-driven targets/biomarkers, high-content imaging - Views my own
Joseph Powell @drjosephpowell
3K Followers 2K Following Director of Cellular Science @GarvanInstitute | Director of UNSW Cellular Genomics Futures Institute @CellularFutures
Mor Nitzan @mor_nitzan
789 Followers 412 Following Faculty member at the Hebrew University, studying inference of spatial configurations and dynamics from single-cell data & self-organization in biology
Nathan Lévy @ICLR’... @nathan_levyy
171 Followers 589 Following ML & Spatial Omics | PhD student @YosefLab | @ENS_ParisSaclay alum
Juhyun Kim @juhyunk_
1K Followers 452 Following Ph.D | Seoul National Univ ‘19 | Genomic Medicine Institute(GMI) | scRNA-seq, multiomics, Spatial genomics, sceQTL, GWAS, and Human reference 🧬
Jérémie Kalfon @jkobject
466 Followers 1K Following Doing a Ph.D. AI in Bio. | Ex @WhiteLabGx @BroadInstitute @MIT | Built @PiPleteam | ML, Cancer, Genomics, Data Sci, Entrepreneur, FullStack Dev | All Views Mine
Faisal Mahmood @AI4Pathology
6K Followers 2K Following Associate Prof. @Harvard | Faculty @harvardmed @MassGenBrigham @broadinstitute @harvard_data | Multimodal, Generative, & Agentic AI for Biomedicine
Theofanis Karaletsos @Tkaraletsos
4K Followers 2K Following Head of AI @cziscience | co-founder https://t.co/TIpJn8YQlg for atomistic simulation| probabilistic and deep ML
Jan Lause 🟦 @janla... @JanLause
675 Followers 1K Following data science PhD student 🧬🧠🖥️ scRNA data, retina & brain | sci-comm 🤖❤️🌍 AI & sustainability | easily sidetracked by small details in plots & birds 📈🔍🦜
Siyu He @SiyuHe7
736 Followers 498 Following Postdoc @stanford | PhD @columbia | AI4Biomedicine | Computational cancer biology | spatial biology | statistical machine learning
Angela Oliveira Pisco @drAOPisco
705 Followers 394 Following Scientist & Technologist @czbiohub, Health & Fitness Enthusiast
Ethan Armand @EthanArmand2
293 Followers 1K Following Bioinformatics PhD Student in the Ren lab at UCSD. Modeling gene regulation across species.
Valentine Svensson @vallens
4K Followers 893 Following Molecular cell biology and statistics, mostly scRNA-seq in the immune system. Principal Scientist at Tahoe Tx. Some photography as well.Trends for United States
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