Keerthana M Arun @anxiousnerd101
Admiring how every cell does what it does to thrive despite the randomness while my day gets topsy turvy with just one missing hairband. she/her Joined October 2022-
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Super cool (and surprisingly intuitive) idea from @benkuznetsspeck on predicting response to perturbations!
Super cool (and surprisingly intuitive) idea from @benkuznetsspeck on predicting response to perturbations!
This paper by @benkuznetsspeck uses a conditional VAE and optimization to move beyond associations and infer causal gene perturbations for disease phenotypes. Cool modeling with results from actual data!!
This paper by @benkuznetsspeck uses a conditional VAE and optimization to move beyond associations and infer causal gene perturbations for disease phenotypes. Cool modeling with results from actual data!!
Excited to share this collaborative work with @Hadhjantonakis and @dana_peer led by @Vid_ur reporting drastically different interconversion efficiencies between ESC and XEN, unique trajectories mimicking in vivo states, and key plasticity barriers. cell.com/developmental-…
Such an exciting story from the lab!!! So fun to read and so beautifully quantitative. I have been a bystander to some of the work that @daniellepi, @JonasBraun97, and Yogesh have put into this and it is incredibly awesome to see the whole story :)
If you're interested in AI, machine learning, data science, and black box models, you might enjoy my chat with @Stanford statistician Emmanuel Candès.
If you're interested in AI, machine learning, data science, and black box models, you might enjoy my chat with @Stanford statistician Emmanuel Candès.
We're finally out at @NatureComms. Congrats to @jzhao111, Nick Lammers, @yangjoonkim, Simon Alamos and @gabrimartini_ny ! nature.com/articles/s4146…
We're finally out at @NatureComms. Congrats to @jzhao111, Nick Lammers, @yangjoonkim, Simon Alamos and @gabrimartini_ny ! nature.com/articles/s4146…
Wayback Machine (web.archive.org), Archive-It.org and blog.archive.org resumed / others coming. Please come to our events next week: Escaping the Memory Hole, and Go Behind-the-Scenes at the Physical Archive. blog.archive.org/events Pls donate.…
Excited that our paper is now out at @genomeresearch (genome.cshlp.org/content/34/8/1…)! We’ve since expanded upon our analyses of cell type-specific mRNA decay & looked at miRNA targets 😎 Thanks to our reviewers & editors for improving our work & to my coauthors Erik and @jisaacmurray !
Excited that our paper is now out at @genomeresearch (genome.cshlp.org/content/34/8/1…)! We’ve since expanded upon our analyses of cell type-specific mRNA decay & looked at miRNA targets 😎 Thanks to our reviewers & editors for improving our work & to my coauthors Erik and @jisaacmurray !
I’m amped to share our new work to decrypt transcriptional repressors, now on bioRxiv: biorxiv.org/content/10.110… We paired deep mutational scans with machine learning to predict and even tune repressor activity. (1/8)
Today we release in @biorxivpreprint a pair of related methods, DNA Ticker Tape & ENGRAM, for multiplex, temporally ordered genomic recording of cell lineage histories, enhancer & signal transduction activities, respectively led by the brilliant @_Choi_Junhong & @wchenomics 1/25
After precisely 4 years of grad school, I'm excited to share that the FIRST PEER REVIEWED PAPER FROM MY PHD HAS LANDED! cell.com/cell-systems/f… Indulge me in some back-story. 🧵
A detailed analysis identifying the widespread presence of transcriptional adaptation with some cool stochastic modelling
Updated website with detailed vignettes to use singletCode. Let us know how it works with your data!
Updated website with detailed vignettes to use singletCode. Let us know how it works with your data!
Published today! We found that cancer cells adapting to drug treatments don't simply switch from a sensitive to resistant state; instead there's a ‘resistance continuum’ of resistant phenotypes with epigenetically reprogrammed states. 🧵⬇️ nature.com/articles/s4158… @Gustavo_SFranca
Interested in reliably and robustly extracting ground-truth singlets in your scRNA-seq datasets? Excited to share a project from @yogeshgoyallab and Ziyang Zhang, using DNA barcodes to identify doublets in single-cell RNA sequencing data cell.com/cell-genomics/… (1/
Sara @b4c74jr04EF0unz
19 Followers 531 Following Need a new content parntnerrr heheeh, link beloww lets see if we are closeeee!
RSI_Alerts🇺🇸 @Swafir490853
36 Followers 2K Following 15-30% Monthly | 2 High-Conviction Stocks.Short-Term Gains: 15-20% in Days/Weeks.DM "JOIN" for WhatsApp Alerts. Live Trade Signals • Market Analysis
K P Kumar @kpk98092
0 Followers 117 Following
Kalki Kukreja @KalkiKukreja
757 Followers 504 Following Sys/dev biologist. PhD @KleinLabHMS @MCB_Harvard studying cell fate decisions. Undergrad @IITDelhi. Also at https://t.co/hNIcMgaFHA
NSF-Simons NITMB @NITMB_Chicago
505 Followers 138 Following The National Institute for Theory and Mathematics in Biology (NITMB) aims to transform the practice of biological research and mathematics
bean @shivangayyy
631 Followers 577 Following EEIITK’22 | she/her | f1 | 5sos | bts | music | art | anything really
Ben Kuznets-Speck @benkuznetsspeck
255 Followers 295 Following ML/Genomics @yogeshgoyallab, Northwestern; @UCB_Biophysics; @PhysicsCWRU. Stat-mech, biology, evolution, and noisy spaces between them. (he/him) 🏳️🌈+
Talia Ringer 💚 @TaliaRinger
29K Followers 7K Following Professor, @plfmse, @IllinoisCS! Proof Automation. @SigplanM & CCF Founder. Israeli-American for peace, equality, justice. Mom. They/היא, ND, bi
Naveen Jain @uffdaALLberries
301 Followers 511 Following Future physician-scientist in internal medicine and incoming intern @UCSF | @Penn ‘25 | @WashU ‘16 | functional genomics, lineage tracing, rare cell biology
Emanuelle Grody @EmanuelleGrody
57 Followers 196 Following PhD student in Yogesh Goyal's Lab, Northwestern University
Nupur Jain @NupurJain87
39 Followers 105 Following
Nitukumari24 @nitukumari24
215 Followers 543 Following Postdoctoral fellow @NorthwesternU | @HFSP fellow | PhD @IISc Bangalore
Madeline Melzer @madelinemelzer
72 Followers 118 Following @madelinemelzer.bsky.social PhD Student @NorthwesternU in the @YogeshGoyalLab | she/her
Iain Couzin @icouzin
12K Followers 5K Following FRS. Director, Max Planck Institute of Animal Behavior, Konstanz & Center for the Advanced Study of Collective Behavior, University of Konstanz.🏴
Rahul Sethi @eigenknight
2K Followers 3K Following 23 | Math PhD Candidate @GeorgiaTech | Prev @iitkanpur @UBC | he/him | Fourier Analysis & GMT
Progress In series @IOPProgressin
575 Followers 2K Following IOP Publishing’s Progress In series™ - an evolving network of journals that curate, enhance and amplify essential research to unite global research communities.
Jeremy Manning @jeremyRmanning
1K Followers 245 Following @ContextMemLab director, @dartmouth prof, memory & 🧠 network modeler, data scientist, dad, husband, tree hugger 🌲, & 🧁+🍪 baker
spacegrep🏳️�... @spacegrep
668 Followers 4K Following Head Archscientist, Church of Kurisu; https://t.co/vHxsz3pnDB; https://t.co/d1aYtu13sZ
Gennarino Lab @GennarinoLab
274 Followers 557 Following The Gennarino Lab studies how RNA biology is etiological for neurological disease. We are in the @ColumbiaGenDev department at @ColumbiaMed @Columbia. Hello!
Debaditya Bhattachary... @Debu922
35 Followers 291 Following Physics Undergrad at the @IITKanpur. Interested in Neuroscience, Electronics, Computing, and Gaming.
SheqLab @ShechnerLab
3K Followers 2K Following The Shechner lab in UW Pharmacology. We study Noncoding RNAs and cellular architecture. He/His/Him. All comments are my own. @ShechnerLab.bsky.social
Xuebing Wu @wu_xuebing
3K Followers 2K Following Assistant Professor @Columbia University | Ribosome, translation, RNA, CRISPR, genomics | alum @MIT @WhiteheadInst @Tsinghua_Uni | #hiringNow
David McKellar @dwmckellar
530 Followers 798 Following building spatial transcriptomics tech for RNA @NYGCtech | former @CornellBME | former @NHGRI postbac
Ben Cosgrove @bdcosgrove
2K Followers 2K Following Associate Professor at @CornellBME. Leading the @CosgroveLab to address regenerative medicine challenges.
Lukasz Bugaj @BugajLab
2K Followers 688 Following Asst. Professor @ Penn Bioengineering. Cell Signaling, optogenetics, synthetic biology, cancer signaling, regenerative medicine, bio-tinkering.
@LaBonneLaB @labonnelab
5K Followers 436 Following #DevBio Lab at NorthwesternU Studying Pluripotency, Neural Crest Stem Cells and the Evolution of Vertebrates. Recovering Former Dept. Chair, Diversity Advocate.
Daniel Litt @littmath
50K Followers 884 Following Assistant professor (of mathematics) at the University of Toronto. Algebraic geometry, number theory, forever distracted and confused, etc. He/him.
Matthew C. Good @buenoscience
836 Followers 461 Following Cell Biology of Early Development, Genome Activation, Membraneless Organelles and Synthetic Biology, from the Good Lab @ Penn. @[email protected]
Ellie Rand @EllieRand3
145 Followers 117 Following Harvard Systems Biology PhD in the @baym lab. Petitioning for a bacteria emoji
Bintu Lab @BintuLab
1K Followers 158 Following Single-cell chromatin and gene regulation dynamics for better cell engineering @ Stanford BioE
Lacra Bintu @BintuLacra
2K Followers 286 Following Associate Professor of Bioengineering at Stanford University
NSF-Simons NITMB @NITMB_Chicago
505 Followers 138 Following The National Institute for Theory and Mathematics in Biology (NITMB) aims to transform the practice of biological research and mathematics
Ariel Amir @Ariel_4321
1K Followers 130 Following Professor of physics, interested in mathematical modeling of living systems and in particular microbial growth
bean @shivangayyy
631 Followers 577 Following EEIITK’22 | she/her | f1 | 5sos | bts | music | art | anything really
Nirmalya Kajuri @Kaju_Nut
26K Followers 466 Following Physicist at IIT Mandi. Science Writer and Communicator. Holography and Black Holes.
Scientific American @sciam
4.5M Followers 800 Following Awesome discoveries. Expert insights. Science that shapes the world.
Saori Sakaue @saorisakaue
1K Followers 369 Following Assistant Professor @uwgenome | Previously Instructor @harvardmed | Seeking how much of our destiny can be explained by data and science.
Bahram Shakerin @BahramShakerin
5K Followers 381 Following PhD in hep-th/ph. Interested in Theoretical Physics, Fundamental Physics, Philosophy, Art & Aesthetics. I am an Existentialist. #QuantumGravity
Xiuwei Zhang @XiuweiZhang
1K Followers 276 Following Associate Professor @gtcse @GeorgiaTech | single cell omics, machine learning. PhD @ICepfl alumnus @teichlab @YosefLab
Northeastern Universi... @NUBioE1
614 Followers 223 Following Official account of the Department of Bioengineering at Northeastern University.
Jimmie Ye @yimmieg
3K Followers 157 Following Professor @ UCSF, Genomicist, Geneticist, Adopted Immunologist, #GirlDad, Immigrant
Harry McNamara @h4rrymcnamara
534 Followers 120 Following assistant prof @MCDB_Yale / investigator @WuTsaiYale using tools from synthetic biology and physics to decode and control how cells build multicellular life
ADHD Memes @ADHDForReal
336K Followers 189 Following Sharing our neurodivergent experiences helps us realize that we are not alone. Most memes are on ADHD, some are on Autism and others are just me being silly.
Connie Jiang @cojiberries
423 Followers 443 Following Peds PGY-2 @TheBCRP | MD/PhD @Penn | I ♥️ art, 0.38mm MUJI pens, and tiny paper 🦢 | she/her
Brewster Kahle @brewster_kahle
40K Followers 680 Following Digital Librarian @internetarchive https://t.co/7ojy91o0si https://t.co/bAusgBoQrW https://t.co/c9qTQpeOqA @openlibrary mastodon: @[email protected]://t.co/7ojy91o0si
Patrick Boyle — e/�... @p_maverick_b
5K Followers 1K Following I was a Synthetic Biologist before it was cool, now working on something new. Previously CSO at Ginkgo Bioworks. @patrickboyle on 🟦☁️
Eric Kernfeld @ekernf01
1K Followers 2K Following Statistician and computational biologist; alum @maehrlab, @cahanlab, @alexisjbattle lab. Views are not those of my employer. He/him. https://t.co/jaMuFiHjk0
Ben Recht @beenwrekt
32K Followers 336 Following optimization. machine learning. uc berkeley. I blog at https://t.co/fkJujOPsJb The world won't end.
Clare Abreu (she/her) @clabreu
547 Followers 815 Following English major/news producer-turned-scientist, thanks to CA community colleges and CSULA RISE fellowship. Assistant professor @ NYU. Microbial eco-evo.
Bhattacharyya Lab @moitrayee_lab
1K Followers 1K Following science enthusiasts in Pharmacology @Yale studying molecular mechanisms of cell signaling in cancer and neurodegeneration (https://t.co/hKUrRJr3D2)
Sergey Kryazhimskiy �... @skryazhi
2K Followers 946 Following Permanently moved to BlueSky (skryazhi@bsky)
Dr. Jean Fan @JEFworks
8K Followers 395 Following Associate prof @JHUBME. Doing #singlecell #spatialtranscriptomics #compbio #dataviz. Founder @cuSTEMized. Editor @PLOSCompBiol. Alum @HarvardDBMI @blairmagnet.
William Bialek @wbialek
6K Followers 959 Following
Fran Quintana Lab @QuintanaLabHMS
2K Followers 605 Following Our goal is to combine advanced tools with innovative experimental models to study neuroinflammatory disorders and cancer. Tweets by lab members
Beth Cimini 🔬💻 ... @BoSoxBioBeth
1K Followers 2K Following I turn pictures into numbers so others can turn them into medicine. She/her. Team is @CiminiLab;rants mine. @[email protected] @bethcimini.bsky.social
Beth Cimini Lab 🔬�... @CiminiLab
2K Followers 1K Following Sen Group Leader & CZI Imaging Scientist, Broad Institute, coding+pretty pictures. She/her. @BoSoxBioBeth @[email protected] @bethcimini.bsky.social
Kalli Kappel @KalliKappel
719 Followers 285 Following HHMI Hanna Gray Fellow & @SchmidtFellows @broadinstitute | Soon: Asst Prof @UCLA | PhD: @Stanford Biophysics @RDasLab | RNA+proteins+IDPs, HT expts+computation
Sara Mostafavi @sara_mostafavi
3K Followers 1K Following Associate Professor; Allen School of Computer Science & Engineering, University of Washington Computational biology and ML
Vaikuntanathan Lab @suri_lab
758 Followers 472 Following Theoretical Chemistry group @UChiChemistry. Working on non-equilibrium statistical mechanics, biophysics, and materials.
Ben Kuznets-Speck @benkuznetsspeck
255 Followers 295 Following ML/Genomics @yogeshgoyallab, Northwestern; @UCB_Biophysics; @PhysicsCWRU. Stat-mech, biology, evolution, and noisy spaces between them. (he/him) 🏳️🌈+
Shashi Tharoor @ShashiTharoor
8.5M Followers 1K Following INC. MP for Thiruvananthapuram. Author of 25 books. Founder @ProfCong. ExMinister ofState, Govt.of India. Former UnderSecretaryGeneral, @UN. Cricket fan.
Alexis Battle @alexisjbattle
5K Followers 436 Following Professor of Biomedical Engineering at JHU. Director, Malone Center for Engineering Healthcare. Interim co-director, Data Science and AI Inst. ML/AI, genomics
Gennady Gorin @GorinGennady
879 Followers 251 Following 🦠🧬📊bioinformatics, statistics, and stochastic processes.
Samantha Morris @morris_lab
10K Followers 800 Following Reprogramming and single cell biology @BrighamWomens @harvardmed. Robertson Investigator @NYSCF. Associate Ed @Dev_journal. Co-founder - CapyBio
Claudia Fischbach @fischbcl17
2K Followers 370 Following Professor @CornellBME - Biomedical Engineer - Cancer Researcher Interested in the physical microenvironment and #ECMatrix of tumors. She/her.
Ayshwarya Subramanian @ayshwaryas
1K Followers 2K Following Assistant Professor @CornellMBG @CornellCAS @Cornell studying biological heterogeneity from cells to systems
Vipul Shukla @vipulshukla08
160 Followers 118 Following Assistant Professor of Cell and Developmental Biology at Northwestern UniversityTrends for United States
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