Common Workflow Language project @commonwl
Official Common Workflow Language #CommonWL account. https://t.co/ZfjwAQ6fue commonwl.org Software Freedom Conservancy Joined December 2015-
Tweets430
-
Followers933
-
Following115
-
Likes184
@Steven_Ramage The concepts are defined in @opengeospatial best practice and engineering reports docs.ogc.org/bp/20-089r1.ht… docs.ogc.org/per/22-031r1.h… The application package @commonwl spec is commonwl.org and the open source building blocks are available from @eoepca @EO_OPEN_SCIENCE
@dana_peer @ELIXIREurope @NIHDataScience @tompollard @howard_baek @itcrtraining @FergusPowell @projectEMERSE This one’s for my inner librarian 📚 Absolutely in love with this talk from @QianLiu28878838 on data management; ft. “shelving” and a @commonwl! 🗃️ Better still - it’s all implemented in everyone’s favourite R repository: @Bioconductor 😎
⚠️cwltool users⚠️ (including toil-cwl-runner and others) We recently fixed a data-loss bug, when final outputs had identical names in the same directory. Please upgrade to cwltool version 3.1.20230601100705 or newer! github.com/common-workflo…
The CWL Conference 2023 has started! cwl.discourse.group/t/schedule-of-… #sciworkflows #opensource #commonwl #graph #python #HPC
Bérénice Batut @bebatut
1K Followers 847 Following She/her. Researcher & Instructor in Bioinformatics. @openlifesci, @gxytraining. Mother. @[email protected]Torsten Seemann @torstenseemann
16K Followers 2K Following Microbial genomics, bioinformatics software, training. A/Prof ORCID: 0000-0001-6046-610X Retro 8-bit computers; VIC=20, C=64, C=128.Galaxy Project @galaxyproject
14K Followers 9K Following Galaxy has left Twitter/X! Find us here: LinkedIn: https://t.co/kAk7vcTDVp Bsky: @galaxyproject.bsky.social Mastodon: @[email protected]Geraldine Van der Auw.. @VdaGeraldine
2K Followers 2K Following Lead developer advocate at Seqera; Co-author of Genomics in the CloudJack DiGiovanna @jack_digi
1K Followers 2K Following I like to build things & help people. Tweet Venn diagram includes precision med, ML, & Steelers. CSO @SevenBridges (Velsera)Mick W@tson ↙️ @BioMickWatson
30K Followers 3K Following Bioinformatics | (meta) genomics | Data science. Some politics. Views are all my own and do not represent past, current or future employer.Kyle Hernandez @Evilution84
984 Followers 2K Following Data Harmonization. Bioinformatics. Cancer Genomics. Biomedical Platforms. Opinions are my own. STEM LGBT+ Latinx he/him/hisDr Andrew Lonsdale @LonsBio
1K Followers 1K Following Bioinformatics post-doc at @PeterMacRes. Keen believer in the benefit of side projects. He/Him. Work/Life: 👨👩👧👧💻💻💻💻 👨👩👧👧 👨👩👧👧Vince Buffalo @vsbuffalo
15K Followers 2K Following Evolutionary genetics postdoc @UCBerkeley ♥s biology, running, probability+statistics, 🦀, fly fishing, backpacking. Author of book Bioinformatics Data SkillsAnshul Kundaje (anshu.. @anshulkundaje
22K Followers 2K Following Genomics, Machine Learning, Statistics, Big Data and Football (Soccer, GGMU). Post: @anshulkundaje, Threads: anshulkundajePeter van Heusden (he.. @pvanheus
3K Followers 2K Following #bioinformatics at @SANBI_SA, building bioinformatics workflows for (Pan-)African PH. health & justice! married to @rebecca_mep @[email protected]APE Lab @APELab_INFN
174 Followers 255 Following APE Laboratory institutional account in Roma and Roma Tor Vergata. Run by @robbio9000 and @gulpgiulia. @INFN_ High Performance Computing Lab.Jack Marquez @jack_marquez
300 Followers 2K Following PhD - #HPC #Cloud Yo vengo de la sucursal del cielo, aquí lo que se cae, lo paramos del suelo!!Steven Ramage @Steven_Ramage
21K Followers 13K Following CEO @CEOSdotORG Committee on Earth Observation Satellites, Réseau Consulting Founder https://t.co/a9injevFpy Board @DEarthAfrica @GEOBON_org ScotPiyush Maheshwari @hipiyushhere
2K Followers 4K Following Open To Work | Advisor @Emmet_Finance | Mentor @OvioHQ | Worked in @protocollabs : @ipfs, @filecoin, @web3mine , @spheronfdn, @0xpolygonNicola @cursecatcher
338 Followers 1K Following PhD student in Computer Science at @QbioGroup ~~ opinions are my ownLiwen Zhang @Liwen_Zhang_
12 Followers 98 Following PhD student @KyotoU | Studying the diversity of freshwater giant viruses | Interested in #Microbiology #viruses #Evo&EcoThea Fennell @theagayatri
263 Followers 2K Following Computational Genomics @MRC_LMB 🧬 BA, MSc, PhD student @Cambridge_Uni 🎓 full-time data goblin, all views my own, she/her, @ChurchillCol 📚Mullee Abrahim @AbrahimMullee
13 Followers 106 FollowingHenry Schaefer @hcschaefer
185 Followers 879 FollowingYajun Liu @xiaoheilong1
157 Followers 2K Following 君子和而不同,小人同而不和。The gentleman is harmonious but different, the villain is the same but not harmonious.Hrishikesh Dhondge @hbdhondge
171 Followers 1K Following Bioinformatician | Multidisciplinary enthusiastClinton Nwokocha🐍 @OdogwuGuyman
3K Followers 5K Following Under the influence of Data|SQL|Excel|Power BI|Python|GIS/QGIS enthusiast| Lead Ambassador I4GeFlows4HPC @eFlows4HPC
629 Followers 859 Following #eFlows4HPC project: Enabling dynamic and intelligent workflows in the future EuroHPC ecosystem. Funded by @EuroHPC_JU & the participating states 🇪🇺Levai @Levai_007
599 Followers 418 Following @outreachy Alum' | Blockchain developer && Technical Writer | documenting @DistributeAid | Material boi doing cool stuff in Web3 | they/them| bread stan accountSOPbox @sopbox1
158 Followers 507 Following SOPbox by Parsimony is a Chrome extension which attaches to the right side of your browser. Ready to Go, Wherever You Go with OpenAI. Let's get it done!Dan MacLean @danmaclean
1K Followers 413 Following Bioinformatics, genomics, R, data science, deep learning, plants, pathogens, open science, @[email protected]. Hon. Prof Comp Bio, UEA🎸📷👟. Wiganer.Bioinformatics.org @Bioinfo_org
313 Followers 119 Following The professional network for scientists working in the field of bioinformatics. Founded in 1998, it has grown to include over 40,000 members.Niklas Rindtorff @Niklas_TR
3K Followers 3K Following open tools and data accelerate progress 🥼 co-founder @lab_dao & openlab association, physician, ex @dkfz | @BroadInstitute | @HarvardDBMI | @mattertolifeSora Yonezawa @sorayone56
111 Followers 339 Following 広島大学 統合生命科学研究科 ゲノム情報科学研究室 D1 https://t.co/X67vPnbpoWjynlix @jynlix
13 Followers 471 FollowingDr. Malin Sandström .. @msandstr
2K Followers 4K Following Senior Research Officer, focus on research e-infrastructure. ❤️community standards, #openscience & #FAIR. Proud member of @CSCCE and @OscSweden. Ex-@INCForg.Manoochehr Gheibi :: .. @M_Gheibi_14001
672 Followers 4K Following كلمة الله هي العليا . قرآن کریم . منوچهر غیبی : مهندس برق . ایران :: استان خوزستان : اهواز . Electrical Engineer 🤍🌏🌎🌍🕋💐🌹🌷🌸💌🤍🕛🤍1️⃣🕋1️⃣🤍🕛💝🤍🙏Michael T Young @michaeltyoung3
135 Followers 529 Following Health AI | epidemiology | environmental exposures | digital health https://t.co/Xeqa6QRoabUpbeat Former Prof @upbeatprof
4K Followers 5K Following All tweets mine+do not reflect the views of my employers also @upbeatprof.bsky.social also @[email protected]Carlos Rodrigues @carlosmr12
573 Followers 2K FollowingFederico Murgia @_biofed_
184 Followers 1K Following Bioinformatician at NDPH, University of Oxford, Clinical Trial Service and Epidemiological Studies Unit (‘CTSU’) . | Harris Manchester CollegeJennifer Nazat Martí.. @NazatJen
12 Followers 92 Following Data analysis / research / nutrition / photography / running / yogaAli Mohamed @alimahwer
78 Followers 3K Followingtaofeeq taofeeqat @taofeeqatOla
1 Followers 7 FollowingDer Pommert @Der_Pommert
43 Followers 150 Following M. Sc. der molekularen Biologie mit Schwerpunkt auf angewandter Bioinformatik, Lälles und Kohlenstoffchauvinist. War mal im Radio. #NazisRausmaciej-milowicki @pza0verlord
487 Followers 5K Following Got up close and what I saw, I couldn't believe. My enemy was a genetic replica of me.Chaitanya Golla @ChaiGolla
17 Followers 320 FollowingTim Little @TimLittleBuzz
811 Followers 3K Following Ex-PostDoc at The Crick, researching malaria genomics and transcriptomics -- Views are my own. He/HimAmruta Kale @amrutakale08
24 Followers 107 Following Provenance documentation, Data science , Machine learning, Metadata Standards, AI Ethics, Explainable AI, Trustworthy AIJason @jhwohlgemuth
121 Followers 1K Following Jesus follower. Husband. Father of 3. Progressive programming polyglot pursuing perfect software. Geospatial Data scientist @ORNL.Alexis Lucattini @Lexisomes
385 Followers 395 Following Bioinformatician at University of Melbourne Center for Cancer Research. All tweets are my own.Rosa Filgueira @Rosa_Filgueira
221 Followers 330 Following Lecturer, University of St Andrews, School of Computer ScienceDaniilidis K @DaniilidisK
52 Followers 1K Following University of Thessaly MSc Computational BiomedicineKelly Rosa Braghetto @KellyBraghetto
25 Followers 35 FollowingMarta Serrat @Tecnosocietat
254 Followers 640 Following Open Science, scientific publishing, research assessment, literacies, metrics. @la_UPC librarian. ORCID 0000-0002-7765-5254Galaxy Project @galaxyproject
14K Followers 9K Following Galaxy has left Twitter/X! Find us here: LinkedIn: https://t.co/kAk7vcTDVp Bsky: @galaxyproject.bsky.social Mastodon: @[email protected]Kyle Hernandez @Evilution84
984 Followers 2K Following Data Harmonization. Bioinformatics. Cancer Genomics. Biomedical Platforms. Opinions are my own. STEM LGBT+ Latinx he/him/hisPeter van Heusden (he.. @pvanheus
3K Followers 2K Following #bioinformatics at @SANBI_SA, building bioinformatics workflows for (Pan-)African PH. health & justice! married to @rebecca_mep @[email protected]denbi @denbiOffice
3K Followers 120 Following The 'German Network for Bioinformatics Infrastructure – de.NBI' provides bioinformatics services and training courses to users in life sciences research.National Academies @theNASEM
94K Followers 2K Following Non-partisan. Non-profit. Evidence-based advice on pressing issues from the official account of the National Academies of Sciences, Engineering, and Medicine.ACROSS Project @across_project
257 Followers 442 Following ACROSS is develping an #HPC, #BigData, #ArtificialIntelligence platform, supporting applications in different domains. Funded by @EuroHPC_JU under GA n°955648.Workflows Community I.. @WorkflowsCI
168 Followers 46 Following The Workflows Community Initiative (WCI) brings together community resources and capabilities for workflow users, developers, and researchers.Dennis Chukwunta @ntachukwu
927 Followers 847 Following Unemployed 🐍 @python developer ¦| @outreachy Alumni ¦| @mlh Fellow alumni ¦| @Quansight intern alumni @pandas.Australian BioCommons @AusBiocommons
2K Followers 614 FollowingBD2K-LINCS DCIC @BD2KLINCSDCIC
708 Followers 247 Following The BD2K-LINCS DCIC is part of the Big Data to Knowledge (BD2K) NIH initiative, and it is the data coordination center for the NIH Common Fund's LINCS program.ISB @isbsci
6K Followers 1K Following Institute for Systems Biology, 501(c)3, pioneers of systems biology. Affiliate of @providence. Stay up-to-date at https://t.co/u0O8DT1cD1.CyVerse @CyVerseOrg
3K Followers 292 Following #NSF-funded #OpenScience Workspace for Collaborative #DataDrivenDiscovery for #researchers, #students, and #educatorsThe Agave Platform @agaveapi
74 Followers 39 Following The iPlant Agave API is a hosted Science-as-a-Service platform for building the next generation of science gateways.Netherlands eScience .. @eScienceCenter
3K Followers 2K Following We’re an independent foundation with 100+ people working in the Netherlands’ national centre for academic research software. @[email protected]Broad Clinical Labs @BroadGenomics
9K Followers 599 Following Official X account of Broad Clinical Labs at the Broad Institute. Interested in our services? Visit our website. Retweets ≠ endorsements.Cincinnati Children's.. @CincyInformatix
1K Followers 611 Following Division of Biomedical Informatics @CincyChildrens. Committed to improving health outcomes through the innovative application of biomedical data & informatics.Harvard T.H. Chan Sch.. @HarvardChanSPH
379K Followers 3K Following Health, dignity, and justice for every human being. This is the official account for #HarvardChan.UC Santa Cruz Genomic.. @ucscgenomics
6K Followers 5K Following Unlocking the world's genomic data to accelerate medical and scientific breakthroughs. We're also on 🐘 and 🧵! @UCSCgenomicsWellcome Sanger Insti.. @sangerinstitute
74K Followers 2K Following We are a world leader in genomics research. We apply and explore genomic technologies to advance the understanding of biology and improve health 🧬Apache Taverna @ApacheTaverna
85 Followers 1 Following Open source domain-independent Workflow Management System – a suite of tools used to design and execute scientific workflows and aid in silico experimentationStephen Piccolo @stevepiccolo
679 Followers 304 Following Associate Professor of Biology at Brigham Young University in Provo, UT (USA). Bioinformatics, genomics, data science, informatics education (opinions my own).jxtxFoundation @jxtxFoundation
182 Followers 2 Following JXTX: The James P. Taylor Foundation for Open Science. “The most important job of senior faculty is to mentor junior faculty and students.” - @jxtxHPCEuropa3 @HPCEuropa3
1K Followers 284 Following HPC-Europa3 funds Transnational Access visits to HPC centres. HPC-Europa3 is funded by the @EU_H2020 Research & Innovation programme, grant agreement 730897.Celia van Gelder @celia_vgelder
1K Followers 2K Following Happily working on Bioinformatics and Data Stewardship Training Coordination at DTL/ELIXIR-NL, BioSB, Health-RI, ELIXIR-Europe and GOBLET!GigaByteJournal @GigaByteJournal
403 Followers 765 Following Research, Release, Fork, Update, Repeat. Winner of the 2022 ALPSP Innovation in Publishing Award.EOSC-Life @EoscLife
2K Followers 386 Following EOSC-Life creates an open collaborative digital space for life science in the European Open Science Cloud (EOSC). 🇪🇺-funded project under @EU_H2020 GA #824087NL RSE @nl_rse
574 Followers 94 Following National community of Research Software Engineers (RSEs) in NL, promoting the visibility, importance & recognition of research software. Become a member!ELIXIR UK @ElixirNodeUk
2K Followers 368 Following Supporting the involvement of the UK #bioinformatics community in ELIXIRFrancis Charette Mign.. @fmigneault1
12 Followers 58 Following Research Software Developer @CRIM_ca | Passionate about technology, machine learning, computer vision, programming, anime and gaming.Open Geospatial: OGC @opengeospatial
27K Followers 250 Following OGC’s member-community of experts makes location data Findable, Accessible Interoperable, and Reusable (FAIR) through #innovation #collaboration and #standardscurii @curii
46 Followers 0 Following Precision medicine for all. We sell and support #arvados, an open source platform for managing and processing large biomedical data. [email protected]Michael @illusional_au
132 Followers 194 Following Software Engineer at the Centre for Population Genomics (MCRI / Garvan) · Casual PhotographerNational Academy of S.. @theNASciences
60K Followers 1K Following Serving the nation and the scientific community by promoting outstanding, objective information. Journals: @PNASNexus & @PNASNews | President: @Marcia4ScienceDavid Townley 🇺�.. @davidjtownley
749 Followers 1K Following Commercial Bioinformatics at @illumina - views are my ownDiscourse @discourse
12K Followers 88 Following We make it easy to have meaningful conversations and collaborate anytime, anywhere. Status: @DiscourseStatus Mastodon: @[email protected]eWaterCycle @eWaterCycle
103 Followers 3 Following eWaterCycle: An online environment for explorative computational hydrologyTibor Šimko @tiborsimko
381 Followers 389 Following Open and reproducible research at @CERN. Founder of @cernopendata portal, @reanahub reproducible data analysis platform, @analysispreserv @inveniosoftwareJames Eddy @jamesaeddy
644 Followers 764 Following Enthusiast for all things #openscience & collaborative biomedical research - occasionally knowledgeable about some of those things too (he/him)The Software Sustaina.. @SoftwareSaved
11K Followers 4K Following We provide resources and expertise to cultivate world-class research with software. Edinburgh, Manchester, Oxford & Southampton Universities.Yan Grange @yggrnge
189 Followers 688 FollowingMelbourne Bioinformat.. @MelBioInf
2K Followers 701 Following Providing bioinformatics support for all researchers and students in the Melbourne Biomedical Precinct. Mastodon: @[email protected]Rob Finn @robdfinn
1K Followers 245 FollowingKyle Cranmer @KyleCranmer
16K Followers 3K Following Director Data Science Institute @UWMadison @datascience_uw. EiC @MLSTjournal. Physics, stats/ML/AI, open science. same handle @sigmoid.social and bskyMaxim Scheremetjew @MScheremetjew
10 Followers 48 FollowingKevinSayers @KevinTSayers
234 Followers 1K Following Bioinformatics, HPC, Cloud. AWS Research Scientist in Advanced Computing team.Heather Piwowar @researchremix
8K Followers 3K Following she/her. Taking some down time. Adore cookies + cycling + reading + my fam.Gijs Molenaar @gijzelaerr
475 Followers 474 Following software composer, music brewer, beer flyer, drone programmer. Senior System Engineer at @spotify. You may call me Dr G now.ELIXIR TeSS @ElixirTess
485 Followers 183 Following ELIXIR's Training eSupport System. A registry of aggregated training materials and events from across the Life sciences. Find your training opportunitiesJoshua Gay @joshuagay
1K Followers 2K Following @[email protected] Open source at IEEE | Tweets my own | ex FSF, CK-12 | Dad of 4 | Boulder, COMeet us this week at #BIDS23 in Vienna We'll demo @ellip_global, @geohazards_tep, @UrbanTEP at our booth. Also today starting 16:00 we'll host two special events: ☑️ Mastering Earth observation application packaging with @commonwl ☑️ Open & Reproducible workflows in EO
Are you familiar with our #HPC #workflows like @bsc_compss developed by @BSC_CNS ? Today we are at the German incubator with #SMEs #startups #spinoffs explaining them all with a #demo. More information about our #platform here: eflows4hpc.eu/workflow-platf…
@upbeatprof @commonwl Even better - it was all pre-recorded! cwl.discourse.group/t/schedule-of-…
@sargoshoe @commonwl Loved the talk Sara ! Link to the talk : youtu.be/G__7D8a2WDI
Spent some time this morning translating the CWL User Guide to Brazilian Portuguese 🇧🇷🇵🇹 You can join too! hosted.weblate.org/projects/commo… #translation #i18n #sciworkflows #cwl #workflows #opensource #technicalwriting
2%/2%, then 14%/7%, now 23%(strings)/11%(words). Slowly progressing towards 100%/100% 🇵🇹🇧🇷🥳🤓 #technicalWriting #translation #i18n #sciworkflows #commonwl #cwl #workflows #opensource #python #BrazilianPortuguese
Today we kickoff our #coworking #sprint on #reproducible #workflows in @LEAPSinitiative virtually. I am super happy to have 3 fun and knowledgable speakers available: @johanneskoester @SeqeraLabs @commonwl! 🙏for your contribution and time.
Drop by poster #0311 to have a chat with @amrutakale08 about the work on @NASA @GeorgeMasonU @uidaho #Geoweaver and #commonworkflowlanguage #CWL #AGU22 @jensensunny @ESIPfed @EarthDataHelp
The team has developed a pipeline Carbonite, which is written in CWL @commonwl
And that's a wrap for the opening session... Now… let the #hacking begin! 🥳 #BioHackEU22
📍Project 26-30 at #BioHackEU22 focus on 🧪 #cheminformatics, #RDM platforms, #CommonWL, WfExS-backend & @ELIXIRcloud_aai @GA4GH. #RDM #FAIRDOM_SEEK #ELIXIR_CONVERGE #1MGenomes @ENASequence @FAIRDOM_eu @commonwl @galaxyproject @egonwillighagen @uniqueG24
. @biocrusoe shows a production @commonwl workflow loaded into @galaxyproject via UI, more progress in #CWL integration! #EGD2022
"A standard for sharing and reusing computational workflows [i.e., @commonwl] can provide a solution to describing portable, reusable workflows while also being workflow-engine and vendor neutral." cacm.acm.org/magazines/2022…
Come and hear about workflow managers, which are an excellent way to author reproducible research data analysis pipelines rse.shef.ac.uk/events/lunchby… #commonwl
💡What is the @edamontology ? A controlled vocabulary of data analysis and data management in life sciences. Come to @jobim2022 to #exchange about the #EDAM #community and its new tools to help you easily navigate, use and contribute to the ontology ➡ edamontology.org/page#