DANIO-CODE @daniocode

This is the official Twitter account of DANIO-CODE, an international collaborative effort that aims to annotate the functional elements of the zebrafish genome. Joined July 2017

Tweets

56
Followers

390
Following

63
Likes

18

ferencmueller @ferencmueller

3 years ago

Fantastic talk at @BCGB_UoB by @bogdanoviclab from @CABD_UPO_CSIC on DNA methylation during vertebrate development and evolution @daniocode #epigenetics #embryogenesis #daniocode

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One week ago we released zebrahub.org the @czbiohub #scRNAseq dataset of zebrafish development with a very intuitive explorer. The data is open access here doi.org/10.6084/m9.fig… In this #Thread I'm going to give you a tutorial on how to use #zebrahub 👇 1/n

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Loïc A. Royer 💻🔬⚗️ @loicaroyer

3 years ago

📡 Big day today! Our first #singlecell RNAseq dataset is now live on #Zebrahub: 10 #zebrafish developmental stages, 40 individual embryos, ~120'000 cells. Dataset spans end-of-gastrulation to 10-day larvae. Portal: zebrahub.ds.czbiohub.org Dataset: doi.org/10.6084/m9.fig… 1/n

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Erin Jimenez @ErinJimenezPhD

3 years ago

The deep learning model integrated information about enhancer activity (like ChIP-seq data, histone modification data, known motif sequences and actual vertebrate data from zebrafish @daniocode. We found patterns of transcription factor binding site enrichment 8/n

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Erin Jimenez @ErinJimenezPhD

3 years ago

I’m proud to share my postdoctoral research in @SMBurgessLab identifying regeneration enhancers in zebrafish inner ears at single-cell resolution. 1/n

Cell Genomics @CellGenomics

3 years ago

I’m proud to share my postdoctoral research in @SMBurgessLab identifying regeneration enhancers in zebrafish inner ears at single-cell resolution. 1/n

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Nathan Lawson @LawsonZFLab

3 years ago

Congrats to @ferencemueller and the @daniocode team on their @NatureGenet paper! nature.com/articles/s4158…. Incredibly valuable resource. Underscores collaborative spirit in #zebrafish community. Maybe @NIH and @ERC_Research can step up for phase 2 support?