Devansh Pandey @devpandeyay

PhD Candidate @UTexasILS | Biotechnology and Biochemical Engineering @IITkgp 2022 | Interested in Human Genetics, Evolution, and Deep Learning Austin, TX Joined December 2018

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Iain S. Forrest, MD-PhD @IainSForrest

2 days ago

Most genetic reports label variants as ✅ “pathogenic” or ❌ “benign.” But what patients really want to know is: what are my chances of getting the disease? 🚨 In our new Science study, we used AI + 1.3M patient records to better answer that…

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Edward C. Huang @edwardhuangc

a week ago

What did family trees look like in prehistory? Ancient DNA now lets us sample hundreds of people from a site, but pedigrees have been difficult to reconstruct. Our new tool “repare” finally enables automatic ancient pedigree reconstruction… more in the replies! ⬇️

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Iosif Lazaridis @iosif_lazaridis

2 months ago

news.harvard.edu/gazette/story/…

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Vagheesh Narasimhan @vagheesh

2 months ago

Our new paper on ancient DNA to address the spread of Uralic languages now out in @Nature (we started working on this in 2018). Many interesting results, including a sample from ~16k years ago Yakutia that can be modeled as an unadmixed Native American. nature.com/articles/s4158…

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Devansh Pandey @devpandeyay

5 months ago

Excited to share our new study just published in @ScienceMagazine, led by @xliaoyi! Check it out.

Liaoyi Xu @xliaoyi

5 months ago

Excited to share our new study just published in @ScienceMagazine, led by @xliaoyi! Check it out.

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Daniel Tabin @DanTabin

5 months ago

In a new paper, colleagues and I raise concerns about the conclusions and data from Zhang et al 2022, a paper which reported that they obtained DNA from a 14-thousand-year-old individual from Red Deer Cave in Yunnan China referred to as ‘Mengzi Ren’ (MZR) (Zhang et al Fig 1) 1/15

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Farhad @far_hadd

8 months ago

on twitter, you will always find someone who is tweeting your thoughts but with better grammar.

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Eucharist Kun @EucharistKun

8 months ago

When in evolutionary time does accelerated genomic change occur across phenotypes? Newly published today in @CellGenomics , my latest manuscript with @mashaals and @vagheesh integrates comparative, functional, and ancient genomic data with GWAS. Read more: cell.com/cell-genomics/…

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Texas Football @TexasFootball

9 months ago

HORNS UP. THUMBS DOWN.

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Vagheesh Narasimhan @vagheesh

10 months ago

New paper led by star PhD student @mrschwob (who is currently on the statistics job market) building a bayesian hierarchical model to understand gene flow across space and time in ancient DNA datasets. academic.oup.com/biometrics/art…

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NaturalSciences @ UT @TexasScience

10 months ago

Scientists from @UTAustin & @UCLA used ancient DNA samples to look back in time & reveal new insights into how ancient Europeans adapted to their environments over 7,000 years of European history. #AncientDNA @UT_Stats @texas_IB @vagheesh @devpandeya cns.utexas.edu/news/research/…

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Vagheesh Narasimhan @vagheesh

10 months ago

nature.com/articles/s4225… Another paper that produces a GWAS for unsupervised imaging phenotypes but my main issue is interpretability. What do I do with a PRS for latent vector 14 of the heart, or it's effect size? If you care about disease prediction, don't need IDPs at all

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Nandita Garud @nanditagarud

10 months ago

Delighted to share that our paper on discovering selective sweeps with haplotype statistics in aDNA is now out in Nat. Comm! Wonderful collaboration with @vagheesh, @devpandeyay, and @MarianaHarr.

Devansh Pandey @devpandeyay

10 months ago

Delighted to share that our paper on discovering selective sweeps with haplotype statistics in aDNA is now out in Nat. Comm! Wonderful collaboration with @vagheesh, @devpandeyay, and @MarianaHarr.

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Devansh Pandey @devpandeyay

10 months ago

Exploring #MultimodalAI for disease diagnosis? Stop by my poster (5128W) today at #ASHG2024 from 2:30-4:30 pm – excited to share insights and connect!

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Clay Kosonocky @kosonocky

11 months ago

Stoked to see our Bits to Binders protein design competition covered in @Nature News today alongside @adaptyvbio, @EvoscaleAI, and @Align_Bio! We just wrapped up the design stage of our comp, stay tuned for a update in the coming days! nature.com/articles/d4158…

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Joyce Wang @joyce_yiyi_wang

a year ago

Excited to share my 1st-author work from the @arbelharpak Lab! We examine the accuracy of polygenic score (PGS) predictions across individuals in the UK Biobank. We make 3 observations that expose gaps in our understanding of PGS “portability”. biorxiv.org/content/10.110… (1/28)

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biomlsociety @biomlsociety

a year ago

Announcing the BioML Challenge 2024: Bits to Binders! In this 5-week competition, teams will use AI methods to design protein binders that bind to a target antigen and activate an immune response from its associated CAR-T cell. Real-world scenario. With wet lab validation!