Search results for #seqcode
Taxonomic and metabolic diversity of microbial communities in a thermal water stream in Uzbekistan and proposal of two new classes of uncultivated bacteria, Desulfocorpusculia class. nov. and Tepidihabitantia class. nov. #microbiology #bacteria #SeqCode sciencedirect.com/science/articl…
Proposal of Patescibacterium as the type genus of the phylum Patescibacteriota with Patescibacterium danicum as the type species under #SeqCode #microbiology #taxonomy @ISMEComms @ISME_microbes @seq_code academic.oup.com/ismecommun/art…
Cheers to a great kick off for #isme19 in #capetown. Excited for the plenary tomorrow morning followed by poster sessions, talks, and afternoon round tables. Hard to choose between the #seqcode RT and the #darkoxygen RT. Where will you be? #sciencetwitter #presspass #isme
Two different names proposed for Asgard archaea phylum, Promethearchaeota (#ICNP) and Asgardarchaeota (#SeqCode). It shows how different rules govern prokaryotic #taxonomy. #archaea #eukaryotes #microbiology tiny.cc/83m0zz tiny.cc/63m0zz
The type species Asgardarchaeum abyssi is the anchor for the phylum Asgardarchaeota, which are the closest relatives of #eukaryotes. Since no pure culture is available now, the species and thus the phylum are described under the #SeqCode initiative. sciencedirect.com/science/articl…
With this, we built a custom db AND improved taxonomic resolution within comm profiles. Some of them were #unnamed and #novel lineages, some of which we proposed new names with @m_chuvochina and submitted to #SeqCode! Further , we separated them into brackish/marine ecotypes!
Screening 54 water samples (short & long read #ONT sequencing) across brackish to marine sites, @aprabhu90 - recovered nearly 2,500 genomes - proposed new taxon names (#SeqCode) - created a custom DB for genome-based community profiling (with improved taxonomic resolution!)
A collaborative effort to preserve nomenclatural & taxonomic congruence: "Description of Asgardarchaeum abyssi gen. nov. spec. nov., a novel species within the class Asgardarchaeia and phylum #Asgardarchaeota in accordance with the #SeqCode" led by @DanielTamarit & @Ettema_lab
Presenting our taxonomic reclassification of the genus Methanobrevibacter into 8+1 genera based on phylogenomics data at #vaam. It's already done based on #seqcode, but now we are aiming to validly publish our genera under ICNP rules. #microbiology #taxonomy #vaam2024
Microbe of the Year 2024 at #vaam conference is Ca. Electronema sp. Discovery based on "failed" experiment showed how bacteria transfer electrons via cm long filaments in sediments 🤓. The species described with #seqcode based on genome. #microbiology #vaam2024
Big thanks to #SeqCode curators @m_chuvochina, @_lrr_ , and @marike_palmer for all the hard work they did! SeqCode demonstrates why species descriptions based on axenic cultures have become obsolete. Read more nature.com/articles/s4156… sciencedirect.com/science/articl…
New species of #archaea from arthropods described under the #SeqCode have been finally approved! Since genomes were used as type material for species description, many taxa previously known only from metagenomics now have official species protologues. doi.org/10.57973/seqco…
Even if you have an isolate, it is not always possible to validly publish it as a new species, as national regulations might prohibit free access to the cultures. #SeqCode provides a solution by assigning species names without requiring culture deposition. sciencedirect.com/science/articl…
The developmpent of #seqcode requires participation. Archaea and bacteria cannot name themselves 😄 #taxonomy #microbiology #nomenclature sciencedirect.com/science/articl…
A major hurdle to publishing a new prokaryotic #species is a fact that one need to deposit its culture to two collections. #seqcode is a way to overcome the problem using genome sequence as a type material and not the culture. #microbiology #taxonomy onlinelibrary.wiley.com/doi/10.1002/ml…
Single-strain Enrichments of Electrothrix Cable Bacteria, Description of new species, and Proposal of a Cable Bacteria Taxonomy following the Rules of the #SeqCode
Single-strain Enrichments of Electrothrix Cable Bacteria, Description of new species, and Proposal of a Cable Bacteria Taxonomy following the Rules of the #SeqCode https://t.co/LAUzqPaiyV
Ideally, you also validate taxonomic names under the #SeqCode - using the SeqCode Registry, a registration web portal through which names and nomenclatural types are registered, validated and linked to metadata. More info: isme-microbes.org/seqcode-inform…
#SeqCode is the way to name an uncultured prokaryotic majority. Excellent lecture by William Whitman as an introduction to the topic with updates on the evolving system of #taxonomy. Future is genomic.
