Jacob Roberts @jacoberts
Working on making biomanufacturing better @Keasling_Lab @UCBerkeley he/him Joined October 2021-
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Congrats to our very own @allie_npearson for winning Best Poster Award at the @ ECI Biochemical and Molecular Engineering XXIII in Dublin, Ireland 🇮🇪 on her work uncovering the genetic basis of dicarboxylic acid metabolism. We are so proud! 💚🤍🧡
Macro: the challenge here is making forms of defense that are not also offense. I focus not on weapons or even counter-weapons, but on resilient infrastructure.
New preprint! Foldy is an open-source web app for interactive structure analysis. Research groups can set up their own Foldy instance so any member can easily predict structures with AlphaFold, dock ligands with DiffDock or Vina, and more! Preprint: biorxiv.org/content/10.110…
Great news! Our latest research on polyketide synthase engineering has just been published in @J_A_C_S. Our work presents innovative methods for synthesizing unnatural polyketides with important implications for novel drug and biomaterial discovery. pubs.acs.org/doi/10.1021/ja…
Happy to share that DiffDock was accepted to #ICLR and even happier to share new exciting results in the updated manuscript! Unlike previous docking methods, DiffDock retains a large part of its accuracy when run on computationally folded protein structures! A thread 🧵
@AnthropicAI 4/ Constitution
Finally out! Check how we improved the reductive glycine pathway via ALE and harnessed it for the production of lactate from formate!👇
The Keasling lab is now accepting undergraduate applications with availability on the follow projects. Apply by Friday 8/26 @ forms.gle/DysmuPRmDs6NQG… and indicate which project(s) interest you!
This is a great comparison of ML approaches to predicting protein activity/fitness. Explains differences well and arrives at a simpler & more accurate model. nature.com/articles/s4158…
I’m excited to introduce our Retro-Cascorder, out today in @Nature! This molecular device logs barcoded receipts of gene expression in a temporal genomic ledger. Sequence the ledger --> recover the history of gene expression. nature.com/articles/s4158…
Here at @SavageCatsOnly we are thrilled to present a review on rubisco. We focused on structure, mechanism, evolution and engineering attempts. We try, and fail, to conclusively answer the question "What exactly is holding this enzyme back?" 1/10 arxiv.org/abs/2207.10773
Table of organic compounds & their smells.🧪👃
The age of metagenomic structure-prediction-based enzyme discovery is here. Using AF2 predictions of candidate enzyme sequences and ligand docking, this paper discovers a new terpene synthase with a previously unknown substrate: nature.com/articles/s4158…
Also, I'd like to highlight any databases/tools/webservers that make use of AF/RF models for structural search/comparisons. FoldSeek: search.foldseek.com/search 3D-SURFER: kiharalab.org/3d-surfer/subm… DALI: ekhidna2.biocenter.helsinki.fi/dali/ Am I missing any? (2/2)
Volumetric density of potential longhaul fuels: Jet A-1/SAF: 34.7 MJ/l H2 hydrides: 13.2 MJ/l Ammonia liq: 11.5 MJ/l Wood pellets: 11.0 MJ/l H2 MOF: 7.2 MJ/l H2 liquid: 6.4 MJ/l H2 gas: 4.9 MJ/l Li-ion battery: 0.7 MJ/l Discuss
Add.: the method is published in: pubs.acs.org/doi/full/10.10… and the application to protein-ligand complexes in nature.com/articles/s4146…
We have updated the AlphaFold-Multimer paper and code with a new set of protein complex models trained with an improved loss. These models reduce the number of steric clashes and improve accuracy. Code: dpmd.ai/af-multimer-os Paper: dpmd.ai/alphafold-mult…
@RolandDunbrack Hi - we've updated AlphaFold-Multimer now and it should greatly reduce the number of issues like this.
@RolandDunbrack Hi - we've updated AlphaFold-Multimer now and it should greatly reduce the number of issues like this.
Wow. “4 genes were knocked out…including one that encodes a molecule that causes an aggressive human rejection response. A growth gene was also inactivated to prevent the pig’s heart from continuing to grow…6 human genes were inserted…to make the porcine organs more tolerable”
Wow. “4 genes were knocked out…including one that encodes a molecule that causes an aggressive human rejection response. A growth gene was also inactivated to prevent the pig’s heart from continuing to grow…6 human genes were inserted…to make the porcine organs more tolerable”
Danyal Rasheed @DanyalRasheed6
20 Followers 350 Following Looking for a PHD Position in Botany/Plant Science, Plant Stress Physiology, Plant Molecular Physiology, Crop Physiology, Plant Allelopathy, Agronomy and PB etc
Dolly @miyagmiege
104 Followers 531 Following I'm 32 years old, I like listening to music, I like drinking tea, I also like traveling photography, I love my life, I love the world
Peter Winegar @PeterWinegar
201 Followers 273 Following Postdoc in Keasling Lab at UC Berkeley | Ph.D in Chemistry in Mirkin Lab at Northwestern | Synthetic Biology, Protein Crystallography, & Biomaterials
CATCO2NVERS @Catco2N
352 Followers 492 Following The project is funded by the European Union under the #H2020 programme GA101000580. Any related posts reflect only the views of the project.
Preethi Raghavan @preethiragh
32 Followers 75 Following BioE PhD Student @DesaiLabUCSF 🧬 @StanfordBioE '18 🌲
Joff Silberg @JoffSilberg
729 Followers 1K Following Synthetic biologist Rice U with interests in bioelectronics, microbial consortia, genetic memory, environmental science, pedagogy, diversity, equity, inclusion
Ligia O. Martins @lom_martin
390 Followers 486 Following Enzymologist, Nature lover🌵Feminist 💃Professor at @itqbunl🇵🇹 Coordinator @bligzymes 🇪🇺 @COMENZE_msca
BindingDB @BindingDb
714 Followers 378 Following Enabling research by making a growing collection of high-quality, quantitative, binding data findable and usable. Funded by @NIGMS. @[email protected]
Keasling Lab 🏳️�... @Keasling_Lab
4K Followers 627 Following Twitter account for the lab of UC Berkeley Professor @JayKeasling at @JBEI. Tweets by lab members 🧬
Jackie Blake-Hedges @jmblakehedges27
174 Followers 486 Following Protein Biochemist, @UCBerkeley ChemBio PhD, science and soccer lover, thoughts and opinions are my own
BioE_BEAST @BioE_Beast
501 Followers 323 Following Unofficial account from Bioengineering graduate students at UC Berkeley & UCSF. Views are our own. #UCBUCSFBioE
Chris Greening @greeninglab
8K Followers 4K Following Professor & NHMRC Fellow at @MonashUni's Dept of Microbiology. Using microbes to tackle global challenges in health and sustainability. #FirstGen 🐶🇦🇺🌈🎹🌱
Guy R @grohkin
1K Followers 4K Following Writer + Content Strategist @bunsenstudio. Did stuff with (@geneticundrgrnd) and scifind. Molecular Biologist from @IndBio/@Girihlet.
The Genetic Undergrou... @geneticundrgrnd
1K Followers 4K Following The Genetic Underground is a nexus between groundbreaking scientific innovation and societal understanding.
Joana Cabrera @joanapcabrera
82 Followers 128 Following BioE PhD student @UCSF & @UCBerkeley (she/her) 🏳️🌈🇵🇭
Roland Dunbrack 🏳�... @RolandDunbrack
4K Followers 2K Following Comp struct bio. Gay&proud 🏳️🌈. Views my own & not my employer's.
Timothy Stiles @TimothyStiles
3K Followers 2K Following Building the world's most modern, open source, software library for genetic engineering. https://t.co/2QktmNwjOg…
Karen Zhang @thekarenzhang
125 Followers 256 Following PhD candidate in Shipman Lab @GladstoneInst | @UCBerkeley - @UCSF BioE | Occasionally lost in fictional worlds
Eli Weinstein @EliWeinstein6
868 Followers 670 Following Postdoc at Columbia in @blei_lab // @jura_bio // statistics, biophysics, machine learning Incoming assistant professor of chemistry at DTU in Copenhagen.
oso @oso_de_antojos
214 Followers 597 Following Científico. Cortázar, Coltrane, and CRISPR-Cas (order varies)
Albert Liu @liualbertk
56 Followers 75 Following Strategic Initiatives Coordinator @UCDavisResearch | BMCDB Ph.D. @ucdavis | (now hobbyist) Rubiscologist | he/him
Beau Dronsella @BDronsella
310 Followers 250 Following Postdoc working on synthetic carbon fixation and formate assimilation in C. neactor and E. coli @erblabs
Nicholas Karavolias @Carrotvolias
474 Followers 557 Following Plant Biology Ph.D Candidate @ucberkeley @igisci
Qiyun Zhu @zhuqiyun
209 Followers 227 Following Assistant Professor @ASU | Studying #microbiome, #evolution, #bioinformatics, #multiomics | Developing scikit-bio (https://t.co/aXG7aMZ0Nc) | Open-source enthusiast
Leonardo Rios @DrLeoRios
9K Followers 8K Following Assoc Prof @UCLBiochemEng1 | #SynBio Metabolic Engineering Bioprocessing Scale up | Championing Microbial Cell Factories | Lead @LeoRiosLab |
Chad Frischmann 🏳�... @ChadFrischmann
3K Followers 1K Following Founder @ https://t.co/UlLgnV7Mlg, Queering Climate, and GSA. Creator and The "OG" of Drawdown. Calling for #RegenerativeRevolution. Regrow with Abundance!
Maria Astolfi @synbiomaria
1K Followers 992 Following Technology to protect & explore biodiversity @Keasling_Lab @UCBerkeley. From the 🇧🇷 rainforest. Former engineer @Ginkgo, head @iGEM, cofounder @SynBioAmazonas
Constance Bailey @CBBaileyLab
2K Followers 2K Following #SynBio and #naturalproducts. Enzymology, heterologous expression, and bioengineering. Senior Lecturer in Chemical and Synthetic Biology @SydneyChemistry.
Annette Rowe @electromicRowe
767 Followers 501 Following
Michael Köpke 🏭�... @MichaelKoepke80
2K Followers 1K Following Chief Innovation Officer @LanzaTech | Adjunct Faculty @NorthwesternU | Council Member @EngBioRC | he/him | views are my own
Lucas Waldburger @LucasWaldburger
247 Followers 1K Following Machine learning for functional genomics PhD student at UC Berkeley @Keasling_Lab @LabShih NSF research fellow | BioE/EECS
Michael Alburquerque @MichaelAlbur
0 Followers 2 Following
Matthias Schmidt @matthias_schmi
9 Followers 10 Following PhD Student in the @Keasling_Lab working on domesticating microbial hosts and production of sustainable chemicals.
ABPDU @abpdu
481 Followers 354 Following Official account of the Advanced Biofuels and Bioproducts Process Development Unit @BerkeleyLab.
Paul Lourdu Xavier @PaulLXavier
1K Followers 5K Following PhD Scholar, Max-Planck Institute for the Structure and Dynamics of Matter, CFEL-DESY & EuXFEL | Previous: NYU; Stanford University; SLAC; IIT Madras; UoM |
Amy Lu @amyxlu
4K Followers 2K Following Senior Research Scientist @IsomorphicLabs building AI for drug discovery. Prev: CS PhD @berkeley_ai, @PrescientDesign, @insitro, @UofT. 🇨🇦
Jue Wang @jueseph
2K Followers 760 Following Research scientist @googledeepmind. Formerly @UWproteindesign @ginkgo @HMS_SysBio.
Hugh🌈 @hughiechops
954 Followers 2K Following Scientist, former cheesemonger, wino, Sydneysider. Views expressed on this twitter feed are my own
Filippo Federici @FilFederici
367 Followers 935 Following Villanovian, European. Metabolic engineering fanatic. PhD Student at @cphbiosciphd & @LabNikel @dtubiosustain. For ever a @WeTheBarEvenLab kiddo. He/him
Henrique D'Ambrosio R... @HenriqueRetti
230 Followers 576 Following MicroMestrando / Biólogo (Master's Candidate / Biologist) - IO/ICB-USP, Trabalhando com MicroEco Marinha, mas Especialista em Pokémon :v
Evan Groover @evan_groover
985 Followers 2K Following Building CRISPR tools for plants + global food security.
Mitchell Thompson @M_G_Thompson
458 Followers 759 Following Postdoctoral researcher in the lab of Patrick Shih at LBNL. Loves all things bacterial and trying to understand what plants are. Views my own. He/him.
Ravi Lal @raviglal
83 Followers 79 Following Chemical engineering grad student in the Arnold lab @Caltech
James Bowden @jamesbowden_
157 Followers 300 Following ML + Science researcher. next: @berkeley_ai PhD, @NSF fellow! prev: @Caltech. he/him.
Ankit Gupta @GuptaAnkitV
6K Followers 997 Following visiting partner @ycombinator. co-founder of @reverielabs (acquired). @harvard CS.
seemay chou @seemaychou
10K Followers 1K Following scientist. ceo @arcadiascience. co-founder @asterainstitute. chair @navigationfund. texan in CA.
Steven Strogatz @stevenstrogatz
164K Followers 3K Following Mathematician, writer, Cornell professor. All cards on the table, face up, all the time.
Guy R @grohkin
1K Followers 4K Following Writer + Content Strategist @bunsenstudio. Did stuff with (@geneticundrgrnd) and scifind. Molecular Biologist from @IndBio/@Girihlet.
Industrial Microbes @iMicrobesInc
567 Followers 207 Following Making greener, lower cost materials from renewable methane
BASF @BASF
87K Followers 742 Following At BASF, we create chemistry for a sustainable future. We combine economic success with environmental protection and social responsibility.
Peter Winegar @PeterWinegar
201 Followers 273 Following Postdoc in Keasling Lab at UC Berkeley | Ph.D in Chemistry in Mirkin Lab at Northwestern | Synthetic Biology, Protein Crystallography, & Biomaterials
Alex Grant @big_lithium
8K Followers 75 Following decarbonizing and securing supply of critical minerals, metals, and materials
chloe @ChloeFishman
79 Followers 206 Following graduate fellow at Rockefeller University - previously Gladstone Institutes-UCSF, Georgetown/NASA
kate crawford @katecrawdaddy
107 Followers 148 Following Shipman lab grad student @UCSF. she/her. grad students, let's negotiate w the UCs as equals https://t.co/xwbeRwSs61
Santi Bhattarai-Kline @BhattaraiKline
111 Followers 90 Following Synthetic biology, biotechnology, human health. UCLA medical student. Class of 2027
Lyon Bruinsma @BruinsmaLyon
107 Followers 88 Following Postdoctoral Researcher | Likes to crazily rewire bacterial metabolism 🧬🔬| Wannabe polyglot | #Pseudomonasputida #MetabolicEngineering 🏳️🌈
Weinberger Lab @Weinberger_Lab
428 Followers 94 Following Dr. Leor Weinberger's lab at UCSF @GladstoneInst Center for Cell Circuitry. Studying principles of fate selection to engineer next-gen therapies.
Simon Duerr @simonduerr
3K Followers 2K Following Assistant Professor UAS at HES-SO Valais-Wallis 🇨🇭 🤗 HF Fellow. Working on AI, Protein Design and Open Science. Creator of https://t.co/Y9GsDuZ0L1
Matthias Tinzl @MatthiasTinzl
98 Followers 154 Following Austrian with a passion for Science and Mountains, PhD Hilvert lab, now SNF Postdoctoral fellow @erblabs
Vayu Hill-Maini @NOFOKitchen
928 Followers 585 Following Assistant professor of bioengineering at Stanford University - harnessing fungi for food and sustainability. Trained in restaurants and labs. he/him
Milo Lab @WIS @MiloLabWIS
1K Followers 71 Following Ron Milo's lab at the Weizmann Institute of Science
Ligia O. Martins @lom_martin
390 Followers 486 Following Enzymologist, Nature lover🌵Feminist 💃Professor at @itqbunl🇵🇹 Coordinator @bligzymes 🇪🇺 @COMENZE_msca
John Chodera (he/him) @jchodera
9K Followers 7K Following Changing drug discovery one ratio of partition functions at a time. Heading up antiviral discovery for pandemics: https://t.co/uN4XpX1mjt https://t.co/YAg9PBYuBl
Elodie Laine @LaineElodie
520 Followers 374 Following Full Professor @Sorbonne_Univ_, working @LCQB_UMR7238 on protein evolution, structures, and interactions. @laineelodie.bsky.social
BindingDB @BindingDb
714 Followers 378 Following Enabling research by making a growing collection of high-quality, quantitative, binding data findable and usable. Funded by @NIGMS. @[email protected]
J. Am. Chem. Soc. @J_A_C_S
185K Followers 10K Following Research, news, and information from the Journal of the American Chemical Society.
Connor W. Coley @cwcoley
6K Followers 980 Following Assistant Professor @MITChemE & @MITEECS | ChE, Chem, AI/ML, etc. for accelerating molecular synthesis and discovery | https://t.co/cAcVl8CjqR | he/him
Sam Goldman @samgoldman19
529 Followers 806 Following
Itai Levin @itai_levin
408 Followers 527 Following @mitdeptofBE PhD alum | Voigt Lab and Coley Group
Communications Biolog... @CommsBio
11K Followers 1K Following An open access @NaturePortfolio journal publishing high quality primary research, reviews and commentary in all areas of the biological sciences.
Jackie Blake-Hedges @jmblakehedges27
174 Followers 486 Following Protein Biochemist, @UCBerkeley ChemBio PhD, science and soccer lover, thoughts and opinions are my own
UPSIDE Foods @UPSIDEfoods
21K Followers 483 Following Meat made from cells. We’re building the future you’re hungry for. *all meat shown is UPSIDE meat https://t.co/yZewgtB2Vq
Tim Davison ᯅ @timd_ca
5K Followers 1K Following Building @cellwalkapp • Apple Design Awards Finalist visionOS • computer graphics • biology • phd
Arvind P. Ravikumar @arvindpawan1
11K Followers 3K Following Co-Director, Energy Emissions Modeling and Data Lab (EEMDL), Prof @UTAustin @UT_PGE studying energy systems and carbon accounting across energy supply chains.
zach @offtargeteffect
666 Followers 909 Following
Nikel SEM Group @LabNikel
2K Followers 355 Following Building synthetic metabolisms in bacteria for a sustainable future @DTUBiosustain · Views are our own + #Pseudomonas’ 🧬 ·
Corinne Scown @cdscown
998 Followers 585 Following Senior Scientist | Bioenergy 🌱 & circular plastics ♻️ LCA/TEA | Mom of 2 | Opinions=own (she/her)
Spark Climate Solutio... @sparkclimate
844 Followers 7 Following Spark Climate Solutions is a science-driven nonprofit dedicated to accelerating progress in emerging, high-impact climate fields.
Justin Panich @DNAmanipulation
45 Followers 91 Following Sustainable biofuels from bacteria that eat CO2. Postdoc at Lawrence Berkeley National Laboratory.
Dr Jenny Mortimer @Jenny_Mortimer1
2K Followers 1K Following 👩🔬🇬🇧 in 🇦🇺. 🌱glycans, synbio, bioeconomy, @plants4space🚀. A/Prof @UniofAdelaide, @jbei. Otherwise mostly 🏏and ☕. @JennyMortimer1.bsky.social
Syma Khalid @ProfSyK
8K Followers 3K Following Prof of Computational Microbiology. Oxford Biochemistry & St Anne’s College. Bacterial Cell Envelopes. Chair of @hecbiosim. #computationalmicrobiology #LFC 🌈
Pioreactor @pioreactor
834 Followers 327 Following Pioreactor = the Raspberry Pi of bioreactors. We make microbiology accessible 🦠
Justine Turlin @JustineTurlin
86 Followers 116 Following PhD student @LabNikel @DTUBiosustain. Interested in C1 assimilation
Ari Satanowski @AriSatanowski
212 Followers 333 Following PostDoc @TheCrick BioDesign Lab, previously @WeTheBarEvenLab & @erblabs – exploring synthetic biology and metabolism of one-carbon compounds
Daniel Goodwin @D_R_Goodwin
2K Followers 719 Following I like biology, computers and type-2 fun. Previously @MIT, now @HomeworldBio, personal 📜 at https://t.co/xdDQRay9XA
Daniel Burkhardt @DBBurkhardt
1K Followers 310 Following Machine Learning Scientist @CellarityBio. Yale Genetics PhD with @KrishnaswamyLab. Core team at https://t.co/Io8MMFp8pl
Fyodor Urnov @UrnovFyodor
16K Followers 506 Following Gene editor + Professor Molecular Therapeutics @berkeleyMCB + Director for Technology and Translation @igisci + @danahercorp Beacon for CRISPR Cures.
Hannah Wayment-Steele @HWaymentSteele
2K Followers 722 Following Biomolecular dynamics, big datasets, small boats. Asst prof @UWBiochem. Before: @JCCFund fellow with @DorotheeKern, PhD @Stanford https://t.co/73Od8N9ZYF
Thompson Lab - UC Mer... @MThompsonLab
728 Followers 668 Following Twitter account of the Thompson Lab @UCMerced. We do structural biology at physiological temperatures and beyond. Most tweets by the PI.Trends for United States
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