Jason Yim @json_yim
PhD student @MIT_CSAIL. Generative models, protein design. 🦋 Bluesky handle: https://t.co/MPlEjog02q On X until the exodus is complete. jasonkyuyim.com Cambridge, MA Joined September 2017-
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🎉Personal update: I'm thrilled to announce that I'm joining Imperial College London @imperialcollege as an Assistant Professor of Computing @ICComputing starting January 2026. My future lab and I will continue to work on building better Generative Models 🤖, the hardest…
We've open sourced Adjoint Sampling! It's part of a bundled release showcasing FAIR's research and open source commitment to AI for science. github.com/facebookresear… x.com/AIatMeta/statu…
We've open sourced Adjoint Sampling! It's part of a bundled release showcasing FAIR's research and open source commitment to AI for science. github.com/facebookresear… x.com/AIatMeta/statu…
#FPIworkshop best paper award goes to @peholderrieth @msalbergo and Tommi Jaakkola. Congrats and great talk Peter!
I won't be at ICLR 🥲 but you can talk to these other cool people at my poster, Thursday 3-5:30 PM in Hall 3+2B #10!
I won't be at ICLR 🥲 but you can talk to these other cool people at my poster, Thursday 3-5:30 PM in Hall 3+2B #10!
Had fun exploring guidance for backbone designability within this latent framework, excited to chat more about guidance with experimental data @gembioworkshop ICLR
Had fun exploring guidance for backbone designability within this latent framework, excited to chat more about guidance with experimental data @gembioworkshop ICLR https://t.co/HfszJaw8sN
I'll be at the ICLR @gembioworkshop workshop presenting latent and structure diffusion for protein backbone generation. Come by to talk all things latent for biology. openreview.net/forum?id=Ek7Hs… arxiv.org/abs/2504.09374
I'll be at ICLR. Come check out our generative modeling work! Reach out if you want to chat. Proteina: x.com/karsten_kreis/… Protcomposer: x.com/HannesStaerk/s… Generator matching: x.com/peholderrieth/…
I'll be at ICLR. Come check out our generative modeling work! Reach out if you want to chat. Proteina: x.com/karsten_kreis/… Protcomposer: x.com/HannesStaerk/s… Generator matching: x.com/peholderrieth/…
RFdiffusion => generative binder design. RFdiffusion2 => generative enzyme design. It's rare to find scientists with deep knowledge in chemistry, machine learning, and software engineering like Woody. The complexity of enzymes matches the complexity of his skills. Check out RFD2
RFdiffusion => generative binder design. RFdiffusion2 => generative enzyme design. It's rare to find scientists with deep knowledge in chemistry, machine learning, and software engineering like Woody. The complexity of enzymes matches the complexity of his skills. Check out RFD2
New enzymes can unlock chemistry we never had access to before. Here, we introduce RFdiffusion2 (RFD2), a generative model that makes significant strides in de novo enzyme design. Preprint: biorxiv.org/content/10.110… Code: coming soon Animation credit: x.com/ichaydon (1/n)
Excited to share our preprint “BoltzDesign1: Inverting All-Atom Structure Prediction Model for Generalized Biomolecular Binder Design” — a collaboration with @MartinPacesa, @ZhidianZ , Bruno E. Correia, and @sokrypton. 🧬 Code will be released in a couple weeks
Protein dynamics was the first research to enchant me >10yrs ago, but I left in PhD bc I couldnt find big expt data to evaluate models. Today w @ginaelnesr, I'm thrilled to share the big dynamics data I've been dreaming of, and the mdl we trained: Dyna-1. rb.gy/de5axp
Combining prediction, generation, and modalities (sequence, structure, nucleic acids, small molecules, proteins) is the future. Congrats to the authors! Looking forward to the technical report.
Combining prediction, generation, and modalities (sequence, structure, nucleic acids, small molecules, proteins) is the future. Congrats to the authors! Looking forward to the technical report.
Introducing All-atom Diffusion Transformers — towards Foundation Models for generative chemistry, from my internship with the FAIR Chemistry team @OpenCatalyst @AIatMeta There are a couple ML ideas which I think are new and exciting in here 👇
Awesome work by Hannnes and Bowen towards improved control of protein structure generation with MultiFlow!
Awesome work by Hannnes and Bowen towards improved control of protein structure generation with MultiFlow!
I really enjoyed seeing how protein generation models scale with more data and weights. Congrats to Nvidia and the core contributors for this amazing work!
I really enjoyed seeing how protein generation models scale with more data and weights. Congrats to Nvidia and the core contributors for this amazing work!
🔥Excited to present *Proteina* next week (accepted as Oral to ICLR'25) in the ML Protein Engineering Seminar Series. Hear about scalable protein backbone generation, fold class guidance, and more! Also, stay tuned for the upcoming official release, including code and weights!🔥
🔥Excited to present *Proteina* next week (accepted as Oral to ICLR'25) in the ML Protein Engineering Seminar Series. Hear about scalable protein backbone generation, fold class guidance, and more! Also, stay tuned for the upcoming official release, including code and weights!🔥
Our MIT class “6.S184: Introduction to Flow Matching and Diffusion Models” is now available on YouTube! We teach state-of-the-art generative AI algorithms for images, videos, proteins, etc. together with the mathematical tools to understand them. diffusion.csail.mit.edu (1/4)
Tired of slow diffusion models? Our new paper introduces f-distill, enabling arbitrary f-divergence for one-step diffusion distillation. JS divergence gives SOTA results on text-to-image! Choose the divergence that suits your needs. Joint work with @wn8_nie @ArashVahdat 1/N
We made a new, reproducible, fair, (and much harder) motif scaffolding benchmark! With Zhuoqi Zheng, Bo Zhang, @DidiKieran @json_yim @_JosephWatson Hai-Feng Chen, @brianltrippe
We made a new, reproducible, fair, (and much harder) motif scaffolding benchmark! With Zhuoqi Zheng, Bo Zhang, @DidiKieran @json_yim @_JosephWatson Hai-Feng Chen, @brianltrippe https://t.co/QMZzCGZ4c0
The BioEmu-1 model and inference code are now public under MIT license!!! Please go ahead, play with it and let us know if there are issues. github.com/microsoft/bioe…
The BioEmu-1 model and inference code are now public under MIT license!!! Please go ahead, play with it and let us know if there are issues. github.com/microsoft/bioe…

Kevin K. Yang 楊凱�... @KevinKaichuang
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Joseph Watson @_JosephWatson
3K Followers 99 Following Co-Founder @ Xaira Therapeutics Former Baker Lab PostDoc at @UWproteindesign. Interested in generative modelling for molecular design. Views my own.
Sergey Ovchinnikov @sokrypton
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David Juergens @DaveJuergens
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Debangana Moitra @DebanganaMoitra
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Spethiosm @Spethiosmr9yd
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ShortIdeasLab🇺🇸 @Ymwuino051
24 Followers 2K Following 15-30% Monthly | 2 High-Conviction Stocks.Short-Term Gains: 15-20% in Days/Weeks.DM "JOIN" for WhatsApp Alerts. Live Trade Signals • Market Analysis
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Kevin K. Yang 楊凱�... @KevinKaichuang
21K Followers 6K Following Principal Researcher in BioML @MSFTResearch (@MSRNE). He/him/他. 🇹🇼
Joseph Watson @_JosephWatson
3K Followers 99 Following Co-Founder @ Xaira Therapeutics Former Baker Lab PostDoc at @UWproteindesign. Interested in generative modelling for molecular design. Views my own.
Sergey Ovchinnikov @sokrypton
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Generate:Biomedicines @generate_biomed
6K Followers 137 Following As pioneers in generative biology, we're revolutionizing the way biotherapeutics are discovered and developed.
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Tim Green @tfgg2
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Yann LeCun @ylecun
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Brendan O'Donoghue @bodonoghue85
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Yuxuan Song @kb_syx
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166 Followers 189 Following Machine learning for computational biology. PhD student at Berkeley EECS.
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Pascal Notin @NotinPascal
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526 Followers 628 Following #ML & #ProteinDesign. PhD student @DukeU.
Richard Shuai @richardwshuai
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Wenhao Gao @WenhaoGao1
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289 Followers 1K Following (ex) tennis, (trying) ML. Research Scientist at NVIDIA, views are my own. Previously, intern at DeepMind, VantAI, Microsoft research, and Amazon AWS.
Zuobai Zhang @Oxer22
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Michael Koeris @mkoeris
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Kyle Swanson @KyleWSwanson
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Peter G Mikhael @pgmikhael
122 Followers 333 Following PhD Student @MIT_CSAIL | Duke ‘19 AI, Health, & Drug Discovery
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Mark Chen @markchen90
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Arash Vahdat @ArashVahdat
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Sam Sinai @samsinai
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DIMENSION @_DimensionCap
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Martin Pacesa @MartinPacesa
5K Followers 988 Following Structural biologist working on 🖥️ protein design, AI, and #CRISPR-Cas gene editing ✂️🧬 Avid weirdness connoisseur 🎩