Daniel McDonald @mcdonadt
Scientific Director of the American Gut Project and The Microsetta Initiative; Knight Lab; UC San Diego Dept. of Pediatrics. he/him. Tweets are my own. scholar.google.com/citations?user… San Diego, CA Joined January 2014-
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Daniel McDonald retweeted
Attending DDW & interested in Microbiome basic & translational research? Check out these Microbiome & Microbial Therapy programmed plenary sessions (see thread below): @AmerGastroAssn @DDWMeeting
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Daniel McDonald retweeted
Our preprint exploring the role of Ne and gene expression on purifying selection in penguins has been recommended by @PCIEvolBiol! Approaches can be extended to many non-model organisms, including using expression bins as a proxy for selection coefficients evolbiol.peercommunityin.org/articles/rec?i…
Daniel McDonald retweeted
Call to the microbiome community. We are building a collaborative microbial metabolite center (CMMC) knowledgbase resource to allow direct connection of microbiome derived molecules, their producers and activities. If you have published papers and want to add your 1/
Daniel McDonald retweeted
scikit-bio is back in action! scikit.bio Thanks to funding from DOE and a reassembled team. Get ready for: Streamlined analysis of massive omic data, Advanced multi-omic integration, Enhanced biological feature annotation. Join us to advance reproducible #openscience
Daniel McDonald retweeted
Join us this summer to tackle impactful challenges in mass-spectrometry data using cutting-edge ML techniques 🚀 #ML #DrugDiscovery #SummerInternship @PrescientDesign @genentech roche.wd3.myworkdayjobs.com/ROG-A2O-GENE/j…
Daniel McDonald retweeted
The contributions that Kristian and his team @scrippsresearch @ScrippsRTI and collaborators have made throughout the pandemic have been immense. His decision to remove himself from this increasingly toxic platform is fully understandable, but unfortunate, to say the least.
Daniel McDonald retweeted
Tyler Griffin (UConn) and I are hosting a Microbiome session at the National Shellfisheries Assn. meeting in Charlotte, NC Mar. 17-21 2024. It's a wonderful meeting with great people- Join us! Abstracts are due Dec 15th, happy to answer any questions! shellfish.org/annual-meeting
Daniel McDonald retweeted
Our paper exploring gene expression adaptive responses in the Emperor penguin (EP)🧊🇦🇶🐧is out on bioRxiv! EPs breed in the harsh, dark Antarctic winters at temps <-45C! We identify genes involved in temperature homeostasis, fasting, and energy metabolism doi.org/10.1101/2023.1…
Daniel McDonald retweeted
Congratulations to Professor Rob Knight on being named a 2023 Citation Laureate! We are incredibly proud to have such an inspiring leader for our lab. #CitationLaureates #MicrobiomeResearch
Congratulations to Professor Rob Knight on being named a 2023 Citation Laureate! We are incredibly proud to have such an inspiring leader for our lab. #CitationLaureates #MicrobiomeResearch
Daniel McDonald retweeted
Really excited to finally see this out! Lots to unpack here. Briefly, our differentiable search & alignment algorithm is competitive with structural prediction methods, and enables scalable remote homology search against large protein databases. @THamamsy @RichBonneauNYC
Really excited to finally see this out! Lots to unpack here. Briefly, our differentiable search & alignment algorithm is competitive with structural prediction methods, and enables scalable remote homology search against large protein databases. @THamamsy @RichBonneauNYC
Daniel McDonald retweeted
Come join us for the Workshop on Genomics 🧬in beautiful Cesky Krumlov in Jan! Applications now open!
Daniel McDonald retweeted
The first #gull chromosome-level #genome assembly is available! Check out our paper presenting a new black-legged #kittiwake genome tinyurl.com/5n6dc9r9 👇👇 a couple of highlights:
Daniel McDonald retweeted
BinaRena: our new tool for human-guided exploration and binning of metagenomes. Paper out in the wild! @MichaelPavia7 @MicrobiomeJ
Daniel McDonald retweeted
Some news: After 8 years & 750 stories, I've decided to leave The Atlantic. Today's my last day. Being a writer means you can’t say things like "I can’t tell you what this means" cos, well, I can. That's kind of the point of me. So here’s an attempt at looking back & forward: 1/
Daniel McDonald retweeted
The Tyson lab presents CheckM2, which leverages machine learning for improved estimation of completeness and contamination of metagenome-assembled genomes (MAGs) generated using metagenomics data. @CMR_QUT @AChklovski nature.com/articles/s4159…
Daniel McDonald retweeted
A team led by researchers from CMI faculty member Siavash Mirarab's lab is proud to unveil uDance, a novel algorithm to infer phylogenetic trees, in an article published today by Nature Biotechnology. cmi.ucsd.edu/2023/07/27/eff…
Jonathan Eisen @phylogenomics
63K Followers 14K Following Professor @UCDavis studying #phylogenomics & function of microbes & #microbiomes. Other: #BirdPhotography #RedSox #Type1. Past: @harvard @stanford @JohnsHopkins
Torsten Seemann @torstenseemann
17K Followers 2K Following Microbial genomics, bioinformatics software, training. A/Prof ORCID: 0000-0001-6046-610X Retro 8-bit computers; VIC=20, C=64, C=128.
GutMicrobiota Health @GMFHx
35K Followers 3K Following Gut Microbiota for Health by experts, for experts from medical & scientific communities. By https://t.co/bGngsUpgkM #GMFH2025 #health #microbiota #gutmicrobiota
Jack A Gilbert (he/hi... @gilbertjacka
13K Followers 4K Following Microbial ecologist: EIC for mSystems; cofounder of BiomeSense; President for AMI. Father, Scientist, Pilot. Views are my own.
Elisabeth Bik @MicrobiomDigest
143K Followers 45K Following Science integrity consultant, PhD. #ImageForensics Previously @ Stanford and (gasp!) uBiome. https://t.co/3DPRMloSwv. https://t.co/w7myEIVwOk 🇳🇱🇺🇸
Mark O. Martin @markowenmartin
10K Followers 500 Following Microbial evangelist and podcaster. Husband, father, moderate. Assoc. Professor facing retirement in June of 2026. Looking for what sparks microbial joy next.
ᐯIᑕTOᖇ ᑎIᘔE... @victornizet
7K Followers 792 Following Physician/Scientist, Bacterial Pathogenesis, Innate Immunity, Experimental ID Rx, Questionable Puns/Memes, Fighting AMR @CHARM_UCSD 🇧🇪🇬🇷🇺🇸🇸🇪
Mick W@tson ↙️ @BioMickWatson
29K Followers 3K Following Bioinformatics | (meta) genomics | Data science. Some politics. Views are all my own and do not represent past, current or future employer.
Daniel Portik @DPortik
2K Followers 3K Following Bioinformatics scientist @PacBio. I work on metagenomics, methylation, and assembly, but also enjoy phylogenomics and frog/lizard evolution. 🦠 🐸 🦎 🧬
Knight Lab @KnightLabNews
11K Followers 28 Following The Knight Lab develops and uses computational and experimental techniques to ask questions about the evolution of microbial communities.
John F. Cryan @jfcryan
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Kristina Campbell, mi... @bykriscampbell
14K Followers 6K Following Reporting on the front lines of microbiome science. Health, diet, medicine, biotech. She. Mastodon @[email protected]
Sudarshan A. Shetty (... @gutmicrobe
2K Followers 2K Following Senior Scientist Bioinformatics and Microbiology | Danone Global Research & Innovation | Views are my own 🇮🇳 🇳🇱 @gutmicrobe.bsky.social
Mehrbod Estaki @MehrbodEstaki
998 Followers 1K Following CSO at @invp_lab. I science sometimes. Interested in all things #microbiome, #bioinformatics & data analysis. Gone over to https://t.co/gCvJCrAmIR
Seth Bordenstein @Symbionticism
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Trina McMahon 🌪 @quendi
3K Followers 1K Following Loving microbes, water, genomes, computers, and Wisconsin. @quendi.bsky.social
Jonathan Jacobs 🧬�... @bioinformer
10K Followers 3K Following Authenticity in #genomics #bioinformatics. #scicom, @officialATCC #gaming #DnD #EDM #punk @ Home ♟👾🎮 🎸he/him // I may unfollow you if you post dumb politics
Robert Quinn @Quinn_Labs
799 Followers 180 Following Twitter locale for Dr. Robert Quinn Associate Professor and his laboratory at Michigan State University Biochemistry Dept. #Microbiome enthusiast!
Nicola Segata @nsegata
5K Followers 815 Following Professor at @CIBIO_UniTrento and head of the @cibiocm lab working on metagenomics, the human microbiome and computational biology.
JuliaJames @mYSHQln0ZpLmsJ0
37 Followers 3K Following
Bryan O'Loughlin @bryanoloughlin
542 Followers 6K Following Climate/Energy, Sustainabilty, CapitalMarkts, AI, HighEd. IE-MBA, xlingual:FR,ESP+IRL IRONMAN Lanz'16. UTMB-CCC'19 (101km,↑6100m) Explrd85+countries, no wife
EAPS Congress @EAPSCongress
2K Followers 2K Following The Congress of the European Academy of Paediatric Societies (EAPS) | #EAPS2025 | 18-20 October 2025
Children MDPI @Children_MDPI
951 Followers 2K Following Children (ISSN 2227-9067, IF 2.1, Q2) is an international #openaccess journal, covering all aspects of #pediatrics, published monthly online by MDPI.
Rikke ML @Rikke_ML
1 Followers 13 Following
Microbiome Virtual In... @MicrobiomeVIF
3K Followers 625 Following • a free recurring bite-sized alternative to multi-day #microbiome conferences • ➡️ Every month, a new event... join the #MVIF community!
Kelly Morgan @kelly_morg62056
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Lara @motoyayosh23816
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Liv Morgan @liv_mongan112
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Theodora K. Karagouni... @tkkaragounis
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fossette @fossette44234
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Caminero Lab @LabCaminero
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Bianca Cordazzo @BiaCordazzo
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Jianshu Zhao @jansue_chao
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Justin Shaffer @ShroomScience
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Juanma Peralta @JuanmaPeralta76
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Alchemist @undine999
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Sandra love @tinawooley73
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long nguyen @LongNguyen07
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Kishan @KhemKishan
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apa @apa53583013
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decembernight @jasminekm2022
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Nick Tomeo, PhD @Tomeopaste
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Dr. Jillian Horton @JillianHortonMD
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John Damianos, M.D. @john_damianosMD
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Arpana Church @ArpanaChurch
793 Followers 1K Following Researcher @UCLAHealth | investigating #braingutmicrobiome in #obesity #diet #aging #sex #adversity #GoodmanLuskinMicrobiome #UCLAGI @ABioME| tweets are my own
Lin ZHANG @linzhang8385
948 Followers 3K Following Assistant Professor in The Chinese University of Hong Kong. Fascinating on Host & Microbe. Per aspera ad astra✨
Complex Facts @complex_facts
297 Followers 605 Following A newsletter of facts and research papers by @victorianoi from @graphext. Complex debates require complex Facts. Let’s find and create better data!
GeraldineBoyle @VgN8RHR106N7tO
72 Followers 7K Following
hutlab @hutlab
3K Followers 213 Following The Huttenhower Lab at the Harvard T.H. Chan School of Public Health: microbial community function and human microbiome population health; Moderator @JTNearing
Jonathan Eisen @phylogenomics
63K Followers 14K Following Professor @UCDavis studying #phylogenomics & function of microbes & #microbiomes. Other: #BirdPhotography #RedSox #Type1. Past: @harvard @stanford @JohnsHopkins
Torsten Seemann @torstenseemann
17K Followers 2K Following Microbial genomics, bioinformatics software, training. A/Prof ORCID: 0000-0001-6046-610X Retro 8-bit computers; VIC=20, C=64, C=128.
Michael Baym @baym
22K Followers 2K Following Microbiology, evolution, antibiotic resistance, applied math, molecular biotech. Associate Professor @HarvardMed. Basic research is the engine of progress
Nature Microbiology @NatureMicrobiol
74K Followers 2K Following Nature Microbiology publishes the latest research and commentary in all areas of microbiology. Now also at https://t.co/DBlricMTJ8
GutMicrobiota Health @GMFHx
35K Followers 3K Following Gut Microbiota for Health by experts, for experts from medical & scientific communities. By https://t.co/bGngsUpgkM #GMFH2025 #health #microbiota #gutmicrobiota
Jack A Gilbert (he/hi... @gilbertjacka
13K Followers 4K Following Microbial ecologist: EIC for mSystems; cofounder of BiomeSense; President for AMI. Father, Scientist, Pilot. Views are my own.
Pieter Dorrestein @Pdorrestein1
7K Followers 525 Following I enjoy chemical analysis by mass spectrometry associated with microbes, microbiome, forensics, agriculture, drug discovery and metabolism.
Elisabeth Bik @MicrobiomDigest
143K Followers 45K Following Science integrity consultant, PhD. #ImageForensics Previously @ Stanford and (gasp!) uBiome. https://t.co/3DPRMloSwv. https://t.co/w7myEIVwOk 🇳🇱🇺🇸
Mark O. Martin @markowenmartin
10K Followers 500 Following Microbial evangelist and podcaster. Husband, father, moderate. Assoc. Professor facing retirement in June of 2026. Looking for what sparks microbial joy next.
Harmit S. Malik @HarmitMalik
43K Followers 7K Following Study genetic conflicts professionally. Try to avoid conflicts in personal life (with mixed results). @HutchBasicSci @fredhutch @HHMINEWS He/him
ᐯIᑕTOᖇ ᑎIᘔE... @victornizet
7K Followers 792 Following Physician/Scientist, Bacterial Pathogenesis, Innate Immunity, Experimental ID Rx, Questionable Puns/Memes, Fighting AMR @CHARM_UCSD 🇧🇪🇬🇷🇺🇸🇸🇪
Mick W@tson ↙️ @BioMickWatson
29K Followers 3K Following Bioinformatics | (meta) genomics | Data science. Some politics. Views are all my own and do not represent past, current or future employer.
Knight Lab @KnightLabNews
11K Followers 28 Following The Knight Lab develops and uses computational and experimental techniques to ask questions about the evolution of microbial communities.
John F. Cryan @jfcryan
22K Followers 7K Following Vice President for Research & Innovation @ucc @UCCResearch @UCCInnovation| PI @pharmabiotic| Prof @AnatNeuroUCC| MRIA @RIAdawson| Bluesky @jfcryan.bsky.social
Kristina Campbell, mi... @bykriscampbell
14K Followers 6K Following Reporting on the front lines of microbiome science. Health, diet, medicine, biotech. She. Mastodon @[email protected]
ASM @ASMicrobiology
91K Followers 280 Following Official account of the American Society for Microbiology. With over 36,000 members, ASM's mission is to promote & advance the microbial sciences.
Mehrbod Estaki @MehrbodEstaki
998 Followers 1K Following CSO at @invp_lab. I science sometimes. Interested in all things #microbiome, #bioinformatics & data analysis. Gone over to https://t.co/gCvJCrAmIR
Seth Bordenstein @Symbionticism
10K Followers 2K Following Scientist, Huck Professor: Microbiome, Symbiosis, Genetics, Evolution, Wolbachia, #PhageWO | Education @WolbachiaProj | One Health Microbiome Center @PSUmBiome
Cell Host & Microbe @cellhostmicrobe
27K Followers 266 Following The scientific editors of Cell Host & Microbe, a Cell Press journal, bring you the latest information and insights from the forefront of host-microbe research.
C. Brandon Ogbunu @big_data_kane
9K Followers 1K Following Scientist + Humanist + Pugilist. 70% Smoke. 30% Stack.
NTSB Newsroom @NTSB_Newsroom
126K Followers 0 Following NTSB_Newsroom is the official Twitter handle of the NTSB's media relations division, providing timely and official information about newsworthy NTSB activities.
Roger Parloff @rparloff
50K Followers 1K Following Senior editor, Lawfare. Journalist. Ex-Fortune staff. Published in ProPublica, NYT, New York, New Yorker, Yahoo Finance, Air Mail, etc. rparloff on BlueSky.
LiveOverflow 🔴 @LiveOverflow
155K Followers 1K Following wannabe hacker... he/him 🌱 grow your hacking skills @hextreeio
Cameron R. Wolfe, Ph.... @cwolferesearch
27K Followers 677 Following Research @Netflix • Writer @ Deep (Learning) Focus • PhD @optimalab1 • I make AI understandable
Valve @valvesoftware
733K Followers 11 Following We make games, Steam, and hardware. For support, visit https://t.co/VRsFD4GURP.
Joe Felsenstein @JFelsenstein
617 Followers 1 Following
Teknium (e/λ) @Teknium1
50K Followers 5K Following Cofounder and Head of Post Training @NousResearch, prev @StabilityAI Github: https://t.co/LZwHTUFwPq HuggingFace: https://t.co/sN2FFU8PVE
Verily @Verily
5K Followers 92 Following Verily is an Alphabet data platform and AI company purpose-built for precision health.
Andrew McCalip @andrewmccalip
69K Followers 1K Following Building spacecraft @vardaspace. Circumnavigating world @ https://t.co/hLM2DEHrnx. Art @ https://t.co/Cze338MBMi Former: Co-Founder Cosine Additive, acquired by GE
Yang Chen @yangchen4379
46 Followers 150 Following PhD student at @UCSDBMS in the @KnightLabNews and Gallo labs, @UWMadison alum. Skin microbiome and bioinformatics.
ARB & SILVA @ARB_SILVA
1K Followers 20 Following High quality ribosomal RNA databases. rRNA, biodiversity, 16S/18S, 23S/28S, phylogeny, probe and primer evaluation, alignment service - @dsmzd3 @Leibniz_DSMZ_en
SymbNET @SymbNET
1K Followers 181 Following SymbNET Twinning @EUHorizon2020 network on Host-Microbe Symbiosis, Genomics and Metabolomics @IGCiencia @itqbunl @unil @embl @kieluni | now at symbnet.bsky.soci
Soeren Michael Karst @SorenKarst
261 Followers 142 Following Assistant Professor at Columbia University Fertility Center
Andrej Karpathy @karpathy
1.4M Followers 1K Following Building @EurekaLabsAI. Previously Director of AI @ Tesla, founding team @ OpenAI, CS231n/PhD @ Stanford. I like to train large deep neural nets.
Jarno N. Alanko @jnal... @jnalanko
393 Followers 186 Following I quit. Follow @jnalanko at Bluesky or at https://t.co/LNG33M1Djo. Jarno was not an algorithm. Jarno was a computer scientist. He knew how to write programs. -GPT2.
Julia MV @julialmv
2K Followers 396 Following Senior Program Director @ScrippsRTI & #LongCovid patient-researcher @patientled Let's improve health equity Accessibility is my love language Views are mine
Leo Lahti @antagomir
2K Followers 3K Following Prof. in Data Science, Turku, Finland. Analysis of complex natural and social systems. @[email protected] + Bluesky + Threads + LinkedIn
Jasnah Kholin - 8964 ... @wanderer_jasnah
9K Followers 1K Following HKer. RNA Virologist working on nidovirus/immune system interactions. Insomniac. Life before death. Journey before destination. 一个健康的社會不該只有一種聲音. 解散警隊. ★ she/佢 ★
Prof Peter Hotez MD P... @PeterHotez
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I think you should le... @ITYSL
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Johannes Köster (@jo... @johanneskoester
3K Followers 93 Following Follow me on Bluesky instead: https://t.co/EXytM5VPhb Professor for Bioinformatics and Computational Oncology University of Duisburg-Essen
Charlie Marsh @charliermarsh
28K Followers 830 Following Building @astral_sh: Ruff, uv, and other high-performance Python tools. Prev: Staff engineer @SpringDiscovery, @KhanAcademy, BSE @PrincetonCS.
Lisa Karstens @lisakarstens
416 Followers 168 Following Microbiome bioinformatics researcher; R, Python, open science enthusiast; Associate Professor @OHSUBCB @OHSUinformatics
Mark Hertling @MarkHertling
439K Followers 236 Following Retired soldier. Loves family, dedicated to nation. Student of leadership, nat’l security.
Mt. St. Helens @MtStHelensWA
114K Followers 1 Following I’m here to explain myself. #parody Team Mt. St. Helen’s store ⬇️
Caitlin Guccione @c_gucci3
93 Followers 88 Following PhD Graduate Student in Bioinformatics @UCSanDiego Working in the labs of @yosoykit and @KnightLabNews Cancer Microbiome • Bioinformatics • Math Modeling
Python Package Index @pypi
22K Followers 11 Following The Python Package Index (PyPI) is the repository of software for the Python programming language. Pronounced 🥧 🫛 👁️
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564K Followers 513 Following Founder of the world’s most read daily AI newsletter @therundownai. Sharing the latest developments in the world of artificial intelligence.
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227 Followers 297 Following @MOMI_CORE postdoc at @UCSDHealth @UCSDMedSchool researching human milk oligosaccharides (HMOs), milk microbes and infant gut microbiota (she/her)
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514 Followers 498 Following Associate Prof. at BHSC #UVM. Active researcher and educator in immunology and microbiology. Views are my own.
antisense. @razoralign
16K Followers 66 Following Between language and causality, ephemeral echoes trace the edge of consciousness— intelligence is a transient footprints. https://t.co/5L9IhaBKH5
Island Prof 🏝🇯�... @DrVasshe
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vicki @vboykis
55K Followers 1K Following lots of lists of floats. Founding ml engineer in recsys/personalization. building ✨I like Nutella.
Zico Kolter @zicokolter
23K Followers 680 Following Professor and Head of Machine Learning Department at @CarnegieMellon. Board member @OpenAI and @Qualcomm. Chief Technical Advisor @GraySwanAI.
Ethan Mollick @emollick
288K Followers 576 Following Professor @Wharton studying AI, innovation & startups. Democratizing education using tech Book: https://t.co/CSmipbJ2jV Substack: https://t.co/UIBhxu4bgq
Gergely Orosz @GergelyOrosz
289K Followers 3K Following Writing @Pragmatic_Eng, the #1 technology newsletter on Substack. Author of @EngGuidebook. Formerly Uber & Skype.
Marine Microbiology G... @MMG_IMEDEA
504 Followers 931 Following Marine Microbiology Group @IMEDEA_UIB_CSIC #mmgimedea #AnimalandMicrobialBiodiversityDepartment #ltpimedea
Hugging Face @huggingface
560K Followers 208 Following The AI community building the future. https://t.co/VkRPD0Vclr
John Damianos, M.D. @john_damianosMD
24K Followers 1K Following @MayoClinicGIHep Gastroenterology & Hepatology Fellow. Yale Internal Medicine, Dartmouth Med. Microbiome, probiotics, brain-gut, diet, motility, IBD, MedEd 🇬🇷
Jim Fan @DrJimFan
325K Followers 3K Following NVIDIA Director of Robotics & Distinguished Scientist. Co-Lead of GEAR lab. Solving Physical AGI, one motor at a time. Stanford Ph.D. OpenAI's 1st intern.
OpenAI @OpenAI
4.3M Followers 3 Following OpenAI’s mission is to ensure that artificial general intelligence benefits all of humanity. We’re hiring: https://t.co/dJGr6Lg202
DAIR.AI @dair_ai
79K Followers 1 Following Democratizing AI research, education, and technologies. Learn how to build with AI in our new AI Academy: https://t.co/zQXQt0Pem8
Luis Pedro Coelho (@L... @luispedrocoelho
4K Followers 3K Following group leader at @CMR_QUT science. microbiome. content creator for Elsevier, NPG and others! traveling salesman of second hand ideasTrends for United States
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