Li Song @mourisl
毛利元光. Assistant Prof.. Bioinfo, algorithms. @BioMedDataSci. PostDoc @XShirleyLiu @lh3lh3 @dfcidatascience. PhD @JHUCompSci. https://t.co/zRfJOaf6gD #hiring mourisl.github.io Lebanon, NH, USA Joined August 2009-
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Li Song retweeted
Side project becomes a breakthrough. Recovering information stored in DNA after hundreds of years of degradation is now more feasible. Our new DNA codec Gungnir is achieving full recovery from a single sequence copy containing 20% errors. Preprint at 🔗 biorxiv.org/content/10.110… 1/
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Li Song retweeted
We're still not finding any good evidence for a microbiome in any cancer type: see our new paper in @ScienceTM led by PhD student @YuchenGe1 science.org/doi/10.1126/sc… and the accompanying news piece, science.org/content/articl…
Li Song retweeted
On behalf of the program committee, it is my heartfelt honor to invite you and your teams to join us at GIW/ISCB-Asia 2025, to be held from December 11th to 13th at the vibrant main campus of the University of Hong Kong. @iscb #GIW25 @HKUniversity #HKUCDS @hkumed
Li Song retweeted
In the genomics community, we have focused pretty heavily on achieving state-of-the-art predictive performance. While undoubtedly important, how we *use* these models after training is potentially even more important. tangermeme v1.0.0 is out now. Hope you find it useful!
Li Song retweeted
Our latest book on the mathematical principles of deep learning and intelligence has been released publicly at: ma-lab-berkeley.github.io/deep-represent… It also comes with a customized Chatbot that helps readers study and a Chinese version translated mainly by AI. This is an open-source project.
Li Song retweeted
New job ad: Assistant Professor of Quantitative Social Science, Dartmouth College apply.interfolio.com/172357 Please share with your networks. I am the search chair and happy to answer questions!
Li Song retweeted
@jengreitz & I are looking to hire a computational biologist/biostatistician with project management expertise to collaborate with our teams to map the regulatory code of the human genome and discover genetic mechanisms of disease. Details & application in next post 1/
Li Song retweeted
My postdoc preprint is online now! We revealed GSX2 as a target of mutant IDH in glioma. Check full text below.
My postdoc preprint is online now! We revealed GSX2 as a target of mutant IDH in glioma. Check full text below.
Li Song retweeted
skani v0.3.0 is released. github.com/bluenote-1577/… * 30-40% potential reduction in memory * Breaking changes to indexing and searching databases Calculate ANI for contigs, genomes. Search vs > 140k genomes: pre-indexed GTDB-R226 available for download.
Li Song retweeted
@GarmireGroup, Joshua Levy (Cedars-Sinai) and myself are organizing a workshop on "Advances of AI methods in single cell spatial omics" at PSB2026. Check out our workshop website to submit an abstract: sites.google.com/view/ai-spatia…
Li Song retweeted
Our paper is now in @NatureBiotech! Topological velocity inference from spatial transcriptomic data. TopoVelo infers the direction of differentiation/migration; quantifies spatial cell influence; and identifies morphology changes during differentiation. 🧵rdcu.be/ewqMB
Li Song retweeted
Uh oh: deep learning models in genomics lose badly to very simple linear models. Could they have been over-hyped? (new paper by @s_anders_m @const_ae and Wolfgang Huber) nature.com/articles/s4159…
Li Song retweeted
Clair3 now natively supports using GPU with CUDA or Apple Silicon to speed up calling in v1.2. using either a 4090, or a M3 Ultra, Clair3 can complete an ONT WGS 30x whole-genome variant calling in ~20min. A quick start is at 🔗github.com/HKU-BAL/Clair3…
Li Song retweeted
Terence Tao, perhaps the most famous living mathematician, explains the damage the recent grant cuts to UCLA has caused especially due to its impact on IPAM (the Institute for Pure and Applied Mathematics, one of 6 NSF-funded math institutes in America): mathstodon.xyz/@tao/114956840…
Li Song retweeted
Terence Tao has written a thread on Mathstodon about the damage being caused by the grant freezes at UCLA. mathstodon.xyz/@tao/114956840…
Li Song retweeted
Longdust, a new tool to identify highly repetitive STRs, VNTRs, satellite DNA and other low-complexity regions (LCRs). Similar to SDUST but for long regions. github.com/lh3/longdust
Li Song retweeted
New online! Towards improved fine-mapping of candidate causal variants bit.ly/474ZgCN
Li Song retweeted
Excited to share that scPRS is now out @NatureBiotech! We developed a new single-cell-resolved #PRS using deep learning. nature.com/articles/s4158…
Li Song retweeted
Thrilled to announce our paper, "De novo-designed pMHC binders facilitate T cell-mediated cytotoxicity toward cancer cells," is officially out in @ScienceMagazine! We used generative AI to build a 'GPS' for immune cells to hunt cancer. Read it here: doi.org/10.1126/scienc…
Li Song retweeted
check out our new @eLife paper, led by @KuanHaoChao along with @alan_mayonnaise, @anqi_liu33, @elapertea: OpenSpliceAI: An efficient, modular implementation of SpliceAI doi.org/10.7554/eLife.…
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461 Followers 299 Following Incoming Asst. Prof. @UofUPHS | Biostatistics, Computational Biology, Population Genomics | Past Ed: @jhubiostat, @UABbiostats, @UofIllinois | He/him
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