Michael Schatz @mike_schatz
Bloomberg Distinguished Professor of Computer Science and Biology at Johns Hopkins University schatz-lab.org JHU, Baltimore, MD Joined June 2009-
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If you want to try out AnVIL, join the AnVIL Virtual Workshop on Tuesday 9/2 from 3-5 pm ET! You'll learn about the platform, how to bring & find data, and use the analysis tools on the platform! To sign up, create a free AnVIL account and register here! bit.ly/anvil-virtual-….
Uncalled4—new, open-source software developed by @mike_schatz, @vikshiv1, @samkovaka, @pwhook, @timp0, @RohamRaz, & more—improves scientists’ ability to detect genetic modifications that control gene activity. Learn more: cs.jhu.edu/news/researche…
@jengreitz & I are looking to hire a computational biologist/biostatistician with project management expertise to collaborate with our teams to map the regulatory code of the human genome and discover genetic mechanisms of disease. Details below careersearch.stanford.edu/jobs/computati… Plz RT
Genomics job opportunities in Sweden! Our infrastructure has an open position for a postdoc with a focus on long-read sequencing, and a permanent (!) bioinformatician position in ancient DNA. Cutting-edge tech, great environment, work-life balance, nice country. Please RT!
Final call for posters @KeystoneSymp on #AI in molecular #biology Deadline: August 21, 2025 Beyond scientific talks, our program also includes panel discussions to address challenges + opportunities for innovation + responsibility in AI-driven biology: keysym.us/KSAIBio26
Final call for posters @KeystoneSymp on #AI in molecular #biology Deadline: August 21, 2025 Beyond scientific talks, our program also includes panel discussions to address challenges + opportunities for innovation + responsibility in AI-driven biology: keysym.us/KSAIBio26
Don't miss the chance to hear from these ACC2025 invited speakers! Register before the deadline tomorrow! bit.ly/anvil2025 🗣️ Melissa A. Wilson, PhD, NHGRI 🗣️ Paul A. Harris, PhD, VUMC 🗣️ Alisa Manning, PhD, Broad, MGH, HMS 🗣️ Alex Bick, MD, PhD, VUMC
⏳ Only 1 Week Left to Register for ACC2025! Register before August 19 to come to Nashville on Sep 3–5! 🔵 Full (in-person): $75 🔵 Student (in-person): $25 🔵 Virtual: free And don't forget to submit an abstract by this Friday, August 15! bit.ly/anvil2025
Call for Papers! @genomeresearch is now encouraging submissions for a Special Issue on The Genetics and Genomics of Somatic Mosaicism, Guest Edited by Drs. @giladevrony, @EAliceLee2, and @R_Rahbari. tinyurl.com/Call-for-paper… #BOG25 #KSMosaicism25 #MITS25 #somaticmosaicism
Stayed offline too long.. Several key papers came out (thanks to my group & great collaborators), thankful for great consortia meetings, might have a position in my lab opening, new lab homepage: fritzsedlazeck.github.io oh and got tenured (I know perfect timing ;)). Thanks all
Published TODAY in @NatureComms our chromosome-grade Trichomonas vaginalis G3 assembly & comparative analysis with 6 trichomonad species in birds, pets, humans. Thanks to collaborators @mike_schatz @PhaseGenomics with funding from @NIAIDNews. nature.com/articles/s4146…
Presenting at #ISMBECCB2025 tomorrow! GASTON-Mix, a unified model of spatial gradients and domains in spatial 'omics data. 11:20am UK time at RegSys Also recruiting students for my new lab at @JHUCompSci, feel free to reach out if you want to chat
Presenting at #ISMBECCB2025 tomorrow! GASTON-Mix, a unified model of spatial gradients and domains in spatial 'omics data. 11:20am UK time at RegSys Also recruiting students for my new lab at @JHUCompSci, feel free to reach out if you want to chat https://t.co/8ZPmke4eza
Congrats to Ben Langmead on his promotion to full professor! 🎉 Prof. Langmead is recognized across the computational & life sciences fields for his innovative methods helping to transform how biomedical researchers and other life scientists access & use DNA sequencing data. 🧬
Congratulations Ben!
🎶 Heading to Nashville for the AnVIL Community Conference this Sept? Book your hotel near Vanderbilt now! 🏨 Embassy Suites (15–20 min walk) — book by 7/25: bit.ly/acc2025-hilton 🏨 Marriott (6 min walk) — book by 8/4: bit.ly/acc2025-marrio… Details: bit.ly/anvil2025
The AnVIL platform is a fantastic data and computing resource for human omics research! Come join us to learn about how others are using AnVIL and how you can start using AnVIL too.
The AnVIL platform is a fantastic data and computing resource for human omics research! Come join us to learn about how others are using AnVIL and how you can start using AnVIL too.
🚨 Registration is OPEN for #AnVILCommunity2025 Conference! Join us in Nashville, Sept 3-5 for talks, posters, & CoFest! - Regular rate ($75): bit.ly/acc2025-regist… - Student rate ($25): bit.ly/acc2025-regist… - Virtual (free!): bit.ly/acc2025-regist… Don’t miss it!
Love all these "constant time" lookups :)
Love all these "constant time" lookups :)
Staff scientist position (computational): I am looking for a computational scientist to join my genomics lab at Stanford. They should have an outstanding skillset in ML/statistical methods for genomic applications, postdoc experience and a strong publication record. #sciencejobs
7/ But the real magic? Bioconductor. Thousands of packages, built by bioinformaticians, for bioinformaticians. DESeq2. edgeR. limma.
@sara_mostafavi (@genentech ) & I (@Stanford) r excited to announce co-advised postdoc positions for candidates with deep expertise in ML for bio (especially sequence to function models, causal perturbational models & single cell models). See details below. Pls RT 1/
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