Mark Gerstein @MarkGerstein
#Bioinformatics professor, interested in #DataScience, with photography, triathlons & non-fiction books as hobbies Gerstein.info Yale Joined December 2010-
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A fantastic day for #NetworkScience — truly honored to be elected to the US National Academies alongside @NAChristakis and @stevenstrogatz - congrats to both! nasonline.org/news-and-multi… #NetSci
What drives human lifespan: genetics or lifestyle? A new @BMJ_EBM study indicates both, but impact of favorable lifestyle is big ebm.bmj.com/content/early/…
Calling all #neurogenomics enthusiasts! You won’t want to miss this talk by @MarkGerstein (Professor of Molecular Biophysics & Biochemistry, @Yale University) at #FOGBoston this June! More info on our website: hubs.la/Q02t0yhn0
RIP Lubert Stryer - his Biochemistry was my first college textbook, a gift from the lab where I had a summer job
🎶🎶Check out our Jonathan Warrell, Leonidas Salichos, @MichaelGancz, and @MarkGerstein's new #culturomics paper with @RSocPublishing, examining the use of latent evolutionary signatures to understand the structure of music. royalsocietypublishing.org/doi/10.1098/rs…
🚀🚀 Excited to announce that our latest research "STRUC-BENCH: Are Large Language Models Good at Generating Complex Structured Tabular Data?" is now accepted at #NAACL2024! STRUC-BENCH is a significant step toward evaluating LLMs for structured data generation. #NLProc…
Posting my Cancer Biology seminar tomorrow at U Chicago lectures.gersteinlab.org/summary/Topics… Many slides from @sushant211. New ones from @WillMeyerson on germline v somatic mutations (creating privacy leakages) & J Warrell et al on repurposing latent signatures to study "culturomics"
🔊Excited to announce a tutorial at #ISMB2024: "A Practical Intro to LLMs in Biomedical Data Science Research" on July 8&9, 2024. Organized with @DrQiaoJin, @zhouhufeng, @ShuboTian, Zhiyong Lu (NCBI), & @MarkGerstein. 🔹Whether you're a beginner or an experienced professional -…
Massive study from the labs of @MattGirgenti Jing Zhang @daifengwang @GeschwindLab @MarkGerstein & collaborators, now on @biorxivpreprint: “Single-cell genomics and regulatory networks for 388 human brains” 🧠🧬 biorxiv.org/content/10.110…
“It’s only a matter of time before we face another devastating pandemic. We will have new tools at our disposal to confront the threat, but it’s unclear whether we will have new wisdom”, writes @NAChristakis wsj.com/us-news/four-y…
In >70,000 @uk_biobank participants, 4,000-4,500 steps per day linked with a markedly lowered risk of all-cause death and CV disease, further reduced to max w/ 9,000-10,500 steps/day, no Δ dose-response for sedentary time levels bjsm.bmj.com/content/early/…
A new quantum variational autoencoder has been developed for handling quantum data. In this approach, the initial quantum data is projected into a latent space of mixed state density matrices. @MarkGerstein arxiv.org/abs/2402.17749
🚀 Happy to share an introductory overview "A Survey of Generative AI for de novo Drug Design" with the community! 🔍 Key Highlights: - Dual focus on small molecule & protein generation - Clear breakdown of datasets, benchmarks, & models 📚 Paper: arxiv.org/abs/2402.08703
🤩🤩🤩 Spatial Omics fans, I am super excited to share our latest manuscript!!! 🤩🤩🤩 #spatialomics #spatialbiology #singlecell Spatially Exploring RNA Biology in Archival Formalin-Fixed Paraffin-Embedded Tissues biorxiv.org/content/10.110…
During our recent lab roster meeting, we conducted a fun poll on who'd win the Super Bowl. the Kansas City Chiefs and the San Francisco 49ers emerged as top contenders, with 20 and 19 votes respectively. #SuperBowl #LabMeetingPoll 🏈🔬
Panel 1 — "Generative AI in Medical Education, Basic Science, Clinical Practice" — happening now! Join us online for our inaugural AI in Medicine Symposium and tweet along with us #YaleBIDS_AIIM @YaleMed eventbrite.com/e/2024-ai-in-m…
Sharing with mixed feelings, I genuinely love it. Despite ICLR24 submission scored 8665 and faced rejection.😅 It's the first #bioinformatics codegen benchmark. We built repo-level AST parsers & spent 300+ hours annotating. Invaluable help from @xinyun_chen_ and @MarkGerstein
Sharing with mixed feelings, I genuinely love it. Despite ICLR24 submission scored 8665 and faced rejection.😅 It's the first #bioinformatics codegen benchmark. We built repo-level AST parsers & spent 300+ hours annotating. Invaluable help from @xinyun_chen_ and @MarkGerstein
I am delighted to announce that I recently joined the Department of Molecular and Human Genetics at Baylor College of Medicine. We investigate the functional role of repetitive DNA with a focus on translating discoveries to improve human health. Interested in joining and can't…
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882 Followers 872 Following science journalist, mostly physics & space stuff. olympic em-dasher. @UCSC_SciCom, now @MIP_labor fellow
A fantastic day for #NetworkScience — truly honored to be elected to the US National Academies alongside @NAChristakis and @stevenstrogatz - congrats to both! nasonline.org/news-and-multi… #NetSci
What drives human lifespan: genetics or lifestyle? A new @BMJ_EBM study indicates both, but impact of favorable lifestyle is big ebm.bmj.com/content/early/…
Calling all #neurogenomics enthusiasts! You won’t want to miss this talk by @MarkGerstein (Professor of Molecular Biophysics & Biochemistry, @Yale University) at #FOGBoston this June! More info on our website: hubs.la/Q02t0yhn0
RIP Lubert Stryer - his Biochemistry was my first college textbook, a gift from the lab where I had a summer job
🎶🎶Check out our Jonathan Warrell, Leonidas Salichos, @MichaelGancz, and @MarkGerstein's new #culturomics paper with @RSocPublishing, examining the use of latent evolutionary signatures to understand the structure of music. royalsocietypublishing.org/doi/10.1098/rs…
🚀🚀 Excited to announce that our latest research "STRUC-BENCH: Are Large Language Models Good at Generating Complex Structured Tabular Data?" is now accepted at #NAACL2024! STRUC-BENCH is a significant step toward evaluating LLMs for structured data generation. #NLProc…
🔊Excited to announce a tutorial at #ISMB2024: "A Practical Intro to LLMs in Biomedical Data Science Research" on July 8&9, 2024. Organized with @DrQiaoJin, @zhouhufeng, @ShuboTian, Zhiyong Lu (NCBI), & @MarkGerstein. 🔹Whether you're a beginner or an experienced professional -…
Massive study from the labs of @MattGirgenti Jing Zhang @daifengwang @GeschwindLab @MarkGerstein & collaborators, now on @biorxivpreprint: “Single-cell genomics and regulatory networks for 388 human brains” 🧠🧬 biorxiv.org/content/10.110…
“It’s only a matter of time before we face another devastating pandemic. We will have new tools at our disposal to confront the threat, but it’s unclear whether we will have new wisdom”, writes @NAChristakis wsj.com/us-news/four-y…
In >70,000 @uk_biobank participants, 4,000-4,500 steps per day linked with a markedly lowered risk of all-cause death and CV disease, further reduced to max w/ 9,000-10,500 steps/day, no Δ dose-response for sedentary time levels bjsm.bmj.com/content/early/…
A new quantum variational autoencoder has been developed for handling quantum data. In this approach, the initial quantum data is projected into a latent space of mixed state density matrices. @MarkGerstein arxiv.org/abs/2402.17749
🚀 Happy to share an introductory overview "A Survey of Generative AI for de novo Drug Design" with the community! 🔍 Key Highlights: - Dual focus on small molecule & protein generation - Clear breakdown of datasets, benchmarks, & models 📚 Paper: arxiv.org/abs/2402.08703
@MarkGerstein @Mengting_Gu @gamzeandgursoy Mark and Menting, Happy Lunar New Year! Super late follow-up, I know, but I was talking w a friend from South China about this Q. He said the reason the Shanghainese verbally express tea drinking the unique way they do is because of their observation of British tea time customs.
This is an incredible team work!!! thanks @MinaXu7, @JunLuLab, @YiXing77, @DrMingyaoLi, @MarkGerstein , @YangLiu_Yale, and the real key personnel :) @Zhiliang_Bai , @dingyao_zhang , Yan Gao, Bo Tao, and @Shuozhencat . Thank you all 🥰🥰🥰
🤩🤩🤩 Spatial Omics fans, I am super excited to share our latest manuscript!!! 🤩🤩🤩 #spatialomics #spatialbiology #singlecell Spatially Exploring RNA Biology in Archival Formalin-Fixed Paraffin-Embedded Tissues biorxiv.org/content/10.110…
During our recent lab roster meeting, we conducted a fun poll on who'd win the Super Bowl. the Kansas City Chiefs and the San Francisco 49ers emerged as top contenders, with 20 and 19 votes respectively. #SuperBowl #LabMeetingPoll 🏈🔬
Not teaching my class (Biomedical Data Science) this semester. 1st time in ~20 yrs. Used the extra time to fix up the class website (gersteinlab.org/courses/452). We now have more youtubes, with almost every lecture covered.
Also, we have a full retrospective on the final project analyzing @carlzimmer's genome for the last 6 years (lectures.gersteinlab.org/cbb752/zimmero…), including an annotated VCF with nearly every chromosome. Great thanks to @Susannaliu99.
@MarkGerstein Amazing!! Can’t wait to watch all the lectures online
@MarkGerstein lecture pdf/ppt slides and video lectures available for public? if, yes, where?
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