Michael Milton @multimeric
Research Computing Engineer at @WEHI_research. #Rstats, #Python, #Rustlang, #javascript, #Bioinformatics. More active on Mastodon: https://t.co/UNeZnznJmY github.com/multimeric Melbourne, Australia Joined March 2014-
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Michael Milton retweeted
We're advertising for a Bioinformatics Research Assistant to work with me at @WEHI_research to process and analyse data from a range of single-cell and spatial 'omics technologies. Full details of the role & how to apply: wehi.wd3.myworkdayjobs.com/WEHI/job/Parkv…
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Michael Milton retweeted
🧬💻🔥 We are excited to launch #CuratedAtlasQueryR! millions of cells at your fingertips. A thread 🧵. The harmonized and reannotated #CELLxGENE #singlecell human #atlas can be explored and retrieved as #singlecellExperiment. Please RT! -> stemangiola.github.io/CuratedAtlasQu…
Michael Milton retweeted
Pipeline release! nf-core/proteinfold v1.0.0 (Protein 3D structure prediction pipeline) See the changelog: github.com/nf-core/protei…
Michael Milton retweeted
New Research Officer role available in the Bahlo lab for 2023. Connecting up imaging analysis with genetics. Looking for an image analysis specialist with interest in learning about genetics in a highly collaborative lab. wehi.wd3.myworkdayjobs.com/en-US/WEHI/det…
I wonder if the new #aws Omics service is using the open source AGC (aws.amazon.com/genomics-cli/) behind the scenes? It would make sense to develop and road test the workflow system separately in this way, before providing it later as a paid service. #bioinformatics
Well, I'm a total convert to the #podman container engine. Full (?) implementation of the #docker API + CLI, fully open source, super easy to install, built-in support for MacOS via virtualisation, and even installs + runs without root. I think it even beats out #apptainer.
Michael Milton retweeted
"A year's worth of weekends" @realAaronLun's efforts to re-write key scRNA-seq @Bioconductor/#rstats packages into C++ for use with WASM for the magic that powers jkanche.com/kana/ #biocasia2022
A prize to the first person who can successfully allocate a >1 quettabyte (10^30 bytes) vector in #rstats and manage to call object.size() on it! (I take no responsibility for bankruptcy from cloud charges and/or murder by sysadmin that may result from attempting this 😅)
It's delightfully easy to make fake but plausible protein sequences by browsing NCBI protfam, downloading some interesting families as HMMs and using HMMER's hmmemit. The sequences will make great sample data for an upcoming workshop I'll be running! #bioinformatics
Just another day using the programming language with the world's shortest name. #RStats
A neat timesaver I just learned for the #zsh shell is updating PATH using `path+=/path/to/bin`. This works because $path is an array which is automatically synced with the string $PATH, using the array append operator +=.
It's endlessly annoying that #RStats's native pipe doesn't support piping into operators. You can almost hear the record scratch sound effect when you realise you need to use [ or [[ and have to rewrite your 20-line pipeline into two separate statements.
Today's infinite loop: sourcing an R script which sources itself. R doesn't seem particularly concerned by this, it just appears to be running very slowly, when in fact it will basically never finish. Very easy to replicate: Sys.sleep(1) source("this_file.R") #bioinformatics
Today's infinite loop: sourcing an R script which sources itself. R doesn't seem particularly concerned by this, it just appears to be running very slowly, when in fact it will basically never finish. Very easy to replicate: Sys.sleep(1) source("this_file.R") #bioinformatics
Love to see @CSIRO using two of my favourite technologies, Dask (@dask_dev) and Apptainer (@SingularityApp) at the #eResAU2022 Conference! Link: conference.eresearch.edu.au/2022/08/portab…
Michael Milton retweeted
The Monash Bioinformatics Platform is hiring, 2 exciting roles available: Senior Technical Officer:careers.pageuppeople.com/513/cw/en/job/… and Senior Research Fellow:careers.pageuppeople.com/513/cw/en/job/… @MonashCCS @ACBDresearch @Monash_MTRP #bioinformatics
Apparently the Environment Modules system used in #HPC (ie module load) supports loading modules from within scripting languages like Python 3, R, Ruby and Perl, as well as some new shells like fish, at least since version 4.0.0 (2017): modules.readthedocs.io/en/latest/MIGR…
Chris Greening @greeninglab
8K Followers 4K Following Professor & NHMRC Fellow at @MonashUni's Dept of Microbiology. Using microbes to tackle global challenges in health and sustainability. #FirstGen 🐶🇦🇺🌈🎹🌱
Dr Zahra Islam @Zahra_F_Islam
1K Followers 866 Following Plant-soil microbes research fellow @FertiliserHub, @SciMelb. PhD @MonashUni on bacteria living on thin air. Alumni of @UNSWScience. She/her @zahra-f-islam.bsky
Daniel Fox @_danielfox
395 Followers 1K Following PhD Candidate @Bio21Institute + @MonashBDI 🔬🇦🇺🏳️🌈 Views my own.
Jeremy Leipzig @jermdemo
2K Followers 2K Following Bioinformatics engr & pop gen product mgmt. O'author, PhD, 4x startup survivor. Pipelines, metadata, genomics, reproducible research. Gen X.
Dr Harriet Dashnow @hdashnow
2K Followers 813 Following Asst. Prof @CUBiomedInfo #RareDisease #Genomics #STRs #WomenInSTEM. Parent. Aussie. she/her Views my own @hdashnow.bsky.social
Galaxy Project @galaxyproject
13K Followers 8K Following Galaxy has left Twitter/X! Find us here: LinkedIn: https://t.co/kAk7vcTDVp Bsky: @galaxyproject.bsky.social Mastodon: @[email protected]
A/Prof Sonika Tyagi @tsonika
2K Followers 2K Following #digitalhealth #MachineLearning #WomeninSTEMM #womeninAI Ally of #EquityDiversityInclusion Editor @Frontiersindigitalhealth @PLOSCompBiol
Matt Ritchie @mritchieau
2K Followers 2K Following Everything is R-some #rstats #bioconductor #genomics #singlecell #bioinformatics https://t.co/WNQVpqtkiM
Tim McNamara @timClicks
24K Followers 3K Following On the planet to build a better planet. Software person, kind of into Rust and creative coding. Author of Rust in Action (https://t.co/qgWenxBkeP).
Aedin Culhane (@Aedin... @AedinCulhane
4K Followers 3K Following Prof @MedicineAtUL, @LDCRC_UL Computational Oncology #bioinformatics, R @bioconductor, @eHealth4Cancer. Formerly @HarvardBiostats @DanaFarber. Tweets are my own
James Ferguson @Psy_Fer_
4K Followers 1K Following Bioinformatician/Genomics Software Engineer @GarvanInstitute, Views my own. Mastodon @[email protected], https://t.co/K5efuEeBwt BS: https://t.co/2xF86mQ9Ug
Australian Research D... @ARDC_AU
8K Followers 4K Following Australia's leading research data infrastructure facility. We are no longer posting to X. We're on LinkedIn + subscribe to our newsletter https://t.co/jFpFkfIh8t
Yusuke Abe @AbeYusuke3
580 Followers 8K Following searching new ideas for humanity freedom infinite happiness for all mankind #brain #math #rustlang #AI ∞ 真実は少数派 - 湯川秀樹
rustjobs.net @rustjobsnet
303 Followers 811 Following Better Rust programming language jobs and news #rustlang #rustjobsnet https://t.co/sONk7JdcZ6
Okucoo @Okucoo7419225
34 Followers 1K Following
Mr. Melon @future203c
67 Followers 4K Following
Lucas @D56S7sE26Fbb5
77 Followers 7K Following
Danial Saleem @D_Saleem10
187 Followers 665 Following Making bad code worse, one commit at a time. MSCS @WisconsinCS (tweets here generally don't have anything to do w that)
とみしまかなこ @tomishimak36024
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Wheshat @wheshat20617
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Robert Haase @haesleinhuepf
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Bioinfhotep @pp0196
1K Followers 2K Following Sequences and consequences. @pp0196.bsky.social @[email protected]
anna @anna49665286
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Pablo Rodríguez @DonMostrenco
5K Followers 3K Following Functional nerd. Science storyteller. Physicist and applied mathematician. May contain tweets in ES, EN and NL
Conner Kummerlowe @cskummerlowe
15 Followers 233 Following
Alison robert @charlotte__0b
14 Followers 169 Following 🇦🇫 🇺🇸📍 New official account 🔥☠️ Philippians 4:13 •14 RAM 2500 Cummins 6.7 *US Active Army *🪝 #𝗰𝗵-47*# helicopter 🚁mechanic ✨🪄 (MOS-15U)💪
ef11e2f53c9954 @ef11e2f53c15864
14 Followers 494 Following Amoureux·se de *Rust* ❤️ Hémiparégique au quotidien "*Le vrai bug, c'est de croire qu'il y a des limites.*"
Alex Harston @alexharston
868 Followers 520 Following Co-founder/CEO of https://t.co/mvCGpbUdnK . Developer and neuroscientist.
tzuyen @wongtzuyen
2 Followers 58 Following
Tom Watkins @tbkwatkins
1K Followers 4K Following PGY2 @StanfordPath Physician Scientist Track | Postdoc @mischellab | Visiting scientist @SwantonLab | @UCL_MBPhD alum | @ForbeckForums scholar
Salendra Singh @Salendra_Singh_
791 Followers 5K Following 🖥️ Senior Software Developer/Data Scientist 💼 Center for Immunotherapy & Precision Immuno-Oncology @CCLRI, @ClevelandClinic 📧 [email protected]
Dr.Pearl @DrLadypearl
27 Followers 804 Following
Himanshu Kumar @himanshu_052
299 Followers 4K Following Post-doctoral fellow, School of Biomedical Informatics, The University of Texas Health Science Center at Houston. I tweet about jobs in Biological Science
qicy @qicy11
376 Followers 5K Following 3D genome architecture and single cell multimodal and spatial sequencing
@lincoln81.bsky.socia... @Lincoln81
870 Followers 1K Following immigrant / Software / ML Engineer | Cog Sci PhD | Fellow @SoftwareSaved | ex @Sussex_Psych, @CambPsych, @DondersInst, @CCD_Outreach 🇿🇦
enr1c @mad_enrico
425 Followers 5K Following Machine Learning Engineer 🤖🧠 MLOps 🐍 Kaggle Expert 📈💻 @SpeedClimbingAI 📹🧗 Prev. Co-founder @ Venturi Unmanned Technologies 📡🛩
elijahkohen @elijahkohen2
28 Followers 474 Following
Mikhael Dito Manurung @mikhaeldito313
916 Followers 2K Following Investigating the #immunology of infection and vaccination with #singlecell #multiomics. Curating single-cell news and conversations on https://t.co/RUQfOpNXNf
Marcos Sande-Melon @DrMelonMarc
379 Followers 1K Following Stem Cell Medicine | Research Officer @snsf_ch | MCRI Melbourne @reNEW_global
Elston D'Souza @elstonndsouza
159 Followers 378 Following Learning about what makes people unique. DPhil Student & Computational Research Assistant at CRDG | University of Oxford | @HumanGeneticsOx
Pierre Brunelle @pjlbrunelle
2K Followers 1K Following CEO @pixeltablehq | https://t.co/tI5PxIuLB5 Founder @noteable_io (acq. @confluentinc) | form. @Amazon @Siemens
allen @atongsa42
51 Followers 939 Following evolution/visual system/fly/neurogenetics. Languages shape the way we think 🦅🧬🌌👨💻🧮
Yadong_Qi @Yadong_Qi
18 Followers 650 Following
Matt Field @mattfield100
711 Followers 842 Following Assoc Prof, Director Centre Tropical Bioinformatics, NHMRC ELII Fellow, Genomics, Linux, Precision Medicine, HPC, @JCU, @GarvanInstitute, @CTBMB_JCU 🇦🇺🇨🇦
Based Archive @Based_Archive
168 Followers 2K Following Finding a balance between Romanticism and Rationality. -Wise people possess ideas, the others are possessed by them (S.T. Coleridge)
WEHI (Walter and Eliz... @WEHI_research
21K Followers 2K Following We research and develop treatments for cancer, diseases of development and ageing, immune disorders and infections.
Stefano Mangiola @steman_research
988 Followers 154 Following Computational cancer-immunology and tumour microenvironment @SAiGENCI (co-appointment @WEHI_research), VCA fellow @VicGovDH
Sea Mammal @walrus_md
59 Followers 1K Following here to lurk - will like your relatable neurodivergent thoughts - post-burnout, I'm cringe but I'm free arc
Ayushi @ayushisachan97
329 Followers 2K Following Biostatistician @cdsa_faridabad @THSTIFaridabad @adapt_thsti @garbhinicohort||Alumnus @bhupro @lkouniv||Passionate about Bayesian stats, clinical trials & epi.
Aaron Brown @Rust_AaronBrown
86 Followers 249 Following Go Recruitment Director @GoTek. Empowering the #GoCommunity #Gopher
ARDC Nectar Research ... @nectar_cloud
1K Followers 2K Following The @ARDC_AU Nectar Research Cloud is Australia’s national research cloud providing the research community with on-demand computing infrastructure and software.
Zach 'Passion Armpit'... @deathrat
175 Followers 4K Following i like to break things and occasionally make things (software, hardware, music, photos, video, wood) | adhd | call me whatever pronoun u want bb | free 🇵🇸
Ming "Tommy" Tang @tangming2005
41K Followers 2K Following Director of bioinformatics at AstraZeneca. YouTube at chatomics. On my way to helping 1 million people learn bioinformatics. Also talks about leadership.
𝕐 @nomad421
9K Followers 901 Following I ♥ science & compiled, statically-typed programming languages! I dislike slop in all forms, including slop thinking. Views are my own, but are obviously right.
Chris Greening @greeninglab
8K Followers 4K Following Professor & NHMRC Fellow at @MonashUni's Dept of Microbiology. Using microbes to tackle global challenges in health and sustainability. #FirstGen 🐶🇦🇺🌈🎹🌱
ABACBS @abacbs
4K Followers 177 Following The Australian Bioinformatics And Computational Biology Society Inc. Promoting the science and profession of bioinformatics.
Heng Li @lh3lh3
11K Followers 216 Following Associate professor of biomedical informatics at @HarvardDBMI and @dfcidatascience
Nils Homer @nilshomer
5K Followers 669 Following Moved to Bluesky: https://t.co/KghbVUvbBg "So long and thanks for all the fish"
Dr Zahra Islam @Zahra_F_Islam
1K Followers 866 Following Plant-soil microbes research fellow @FertiliserHub, @SciMelb. PhD @MonashUni on bacteria living on thin air. Alumni of @UNSWScience. She/her @zahra-f-islam.bsky
Dr Andrew Lonsdale ( ... @LonsBio
1K Followers 1K Following Bioinformatics post-doc at @PeterMacRes. Keen believer in the benefit of side projects. He/Him. Work/Life: 👨👩👧👧💻💻💻💻 👨👩👧👧
Daniel Fox @_danielfox
395 Followers 1K Following PhD Candidate @Bio21Institute + @MonashBDI 🔬🇦🇺🏳️🌈 Views my own.
Jeremy Leipzig @jermdemo
2K Followers 2K Following Bioinformatics engr & pop gen product mgmt. O'author, PhD, 4x startup survivor. Pipelines, metadata, genomics, reproducible research. Gen X.
bioRxiv Bioinfo @biorxiv_bioinfo
18K Followers 0 Following
Dr Harriet Dashnow @hdashnow
2K Followers 813 Following Asst. Prof @CUBiomedInfo #RareDisease #Genomics #STRs #WomenInSTEM. Parent. Aussie. she/her Views my own @hdashnow.bsky.social
Phil Ewels @tallphil
2K Followers 180 Following Scientist, software developer and community builder. Product Manager for OSS at @SeqeraLabs. Projects: @nf_core, @MultiQC and @nextflowio.
Torsten Seemann @torstenseemann
17K Followers 2K Following Microbial genomics, bioinformatics software, training. A/Prof ORCID: 0000-0001-6046-610X Retro 8-bit computers; VIC=20, C=64, C=128.
Peter Hickey @PeteHaitch
1K Followers 334 Following Senior Research Officer leading the bioinformatics for the Single Cell Open Research Endeavour (SCORE) at @WEHI_research
COMBINE @combine_au
2K Followers 325 Following Supporting students in Bioinformatics & CompBio. Subcommittee of @ABACBS & Australian @iscbsc Regional Student Group. Join us on slack 👉https://t.co/5tcmo0sh0g
A/Prof Sonika Tyagi @tsonika
2K Followers 2K Following #digitalhealth #MachineLearning #WomeninSTEMM #womeninAI Ally of #EquityDiversityInclusion Editor @Frontiersindigitalhealth @PLOSCompBiol
Matt Ritchie @mritchieau
2K Followers 2K Following Everything is R-some #rstats #bioconductor #genomics #singlecell #bioinformatics https://t.co/WNQVpqtkiM
MonashBioinformatics @MonashBioinfo
2K Followers 552 Following Monash Bioinformatics Platform mastodon: @[email protected]
scverse @scverse_team
3K Followers 0 Following Foundational tools for omics data (mostly in python) Join us at Bluesky: https://t.co/ziA75N5PZp
ARDC Nectar Research ... @nectar_cloud
1K Followers 2K Following The @ARDC_AU Nectar Research Cloud is Australia’s national research cloud providing the research community with on-demand computing infrastructure and software.
Leon Eyrich Jessen @jessenleon
2K Followers 829 Following Assoc. Prof. of #Bioinformatics at @DTUtweet • Head of @immunomicslab at @DTU_HealthTech • Computational #Immunology • 🦋 @leonjessen.bsky.social • MyTweets!
prefix.dev @prefix_dev
1K Followers 18 Following Blazing fast cross-platform package management for teams. By the creators of the mamba package manager.
Stephanie Hicks, PhD @stephaniehicks
9K Followers 2K Following Associate Prof @jhubiostat @JHUBME, mom, she/her, Co-founder @RLadiesBmore. #Biomedical #DataScience #Genomics #Imaging #rstats #python
Australian Research D... @ARDC_AU
8K Followers 4K Following Australia's leading research data infrastructure facility. We are no longer posting to X. We're on LinkedIn + subscribe to our newsletter https://t.co/jFpFkfIh8t
Cameron Patrick @camjpatrick
2K Followers 1K Following not on here any more, find me on the cerulean heavens: cameronpat dot bsky dot social
Yunshun Chen @YunshunC
169 Followers 171 Following
Melanie Bahlo @MelanieBahlo
918 Followers 222 Following Yikes! Twitter! is this a place for introverts?
Seri Feliciano @jmtfeliciano
2K Followers 1K Following Data scientist in DC & part time lecturer at American University | Personal acct&views |@usairforce vet | RTs not endorsements | Personal acct 🌈
Collaborative Centre ... @GenCancerCentre
2K Followers 737 Following Pioneering breakthroughs for people with cancer—a joint venture between @Unimelb and @PeterMacCC.
Podman @Podman_io
4K Followers 44 Following The official Twitter handle for the Podman project, https://t.co/GthMfAW60K. An OpenSource project found on GitHub: https://t.co/Q2dC7tNfDn
Göknur Yapakçı @goknurginer
624 Followers 263 Following Statistician working on developing computational tools for #CRISPR genomics @WEHI_research and @ONJCRI | Cofounder of @RLadiesMelb
Paul Harrison @paulfh... @paulfharrison
664 Followers 218 Following It is time to go. @paulfharrison.bsky.social @[email protected]
Adele Barug @technadele
151 Followers 208 Following Bioinformatician. R. Single Cell. Occasionally tweets. Perpetual lurker
Andrew Perry @pansapiens
532 Followers 257 Following Programmer; some kinda structural bioinformatician. Unashamed retro-gamer. After dark: Building modular synthesizers these days.
SchedMD @SchedMD
276 Followers 0 Following
Daniel Fischer @fisch... @Fischuu
556 Followers 785 Following THIS PROFILE IS INACTIVE. I TRANSITION TO BLUESKY (@fischuu.bsky.social) AND MASTODON (@[email protected])
Evan Floden @EvanFloden
1K Followers 2K Following Supporting scientists to adopt modern software tools like git, containers & cloud to do better science. Open Science advocate. Seqera CEO.
Ramyar Molania @RamyarMolania
327 Followers 307 Following Senior research fellow, computational cancer biologist, MultiOmicsPanCancer, PCF_YI, Harvard Medical School.
Abhinav @abhi18av
154 Followers 412 Following Making bioinfo simple and easy with @nextflowio PhD Candidate at Stellenbosch University, applying Machine Learning on Mtb genome. Tweets are my own.
DrLachie @DrLachie
3K Followers 1K Following I'm not here anymore. Find me on other places. BioImage Analyst at @WEHI_research. #MicroscopistsNightmares. He/Him
Mastodon (@Mastodon@m... @joinmastodon
149K Followers 1 Following Mastodon is the largest decentralized social network on the internet. Built on open web standards by a non-profit. Learn more on our website!
Ning Hall @ning_hall
39 Followers 92 Following PhD student at Monash University investigating microbial methane and nitrous oxide production in coastal sandy sediments 🌊 🏝
Anshul @anshulxyz
486 Followers 662 Following Fixing the skill issues. Personal opinions. 1×Dad. Current hobbies: Football, and Go (the game)!
Chris Hakkaart @Chris_Hakk
311 Followers 536 Following 👨🔬 Scientist | 👨💻 Bioinformatician | 👨💼 Technical Writer for @SeqeraLabs
Jenny Bryan @JennyBryan
33K Followers 572 Following Software engineer @posit_pbc, humane #rstats Trying the mastodon thing at: @[email protected] Also at: @jennybryan.bsky.social
Olivia Carmo @olivia_carmo
292 Followers 339 Following Postdoc in Boeynaems lab @bcmhouston studying crowding and desiccation tolerance. PhD with Leann Tilley @unimelb #malaria #goprotists. 🦋oliviacarmo (she/her)
Tim Tiefenbach @TimTeaFan
1K Followers 310 Following CX Data Scientist 📊 by day ☀️ Indie hacker by night 🌙 Web & App Dev. All things AI 🤖 Also 🇯🇵 👨👩👧👦☕🍵🚀
Brenton Wiernik 🏳�... @bmwiernik
6K Followers 1K Following Work & personality psychologist, meta-analyst, applied statistician. Research scientist at Meta. Former academic. QRP: Queer regression practitioner. He/Him/His
Sean Smith @seanwssmith
184 Followers 591 Following ML Training @nvidia ex-@awscloud - formerly HPC, built AWS ParallelCluster | Runner - 4 x 100 mi, 1 x Ironman | Pilot (CFI and CFI), and airplane owner
Oliver Hofmann @fiamh
2K Followers 885 Following Exploring cancer genomics at the University of Melbourne Center for Cancer Research
Guido van Rossum @gvanrossum
288K Followers 480 Following Python's BDFL-emeritus, Distinguished Engineer at Microsoft, Computer History Fellow, fully vaccinated. Opinions are my own. He/him.
Roozbeh Valavi @ValaviRoozbeh
760 Followers 1K Following Data scientist & spatial ecologist; species distribution models, ecological statistics, geospatial analysis, machine learning, DevOps, R, Python, C/C++, Rust
Apptainer (formerly S... @SingularityApp
9K Followers 2 Following An easy to use, open source, Linux Foundation hosted container solution, powering the most sophisticated and secure computing centers and enterprises.
Stefano Mangiola @steman_research
988 Followers 154 Following Computational cancer-immunology and tumour microenvironment @SAiGENCI (co-appointment @WEHI_research), VCA fellow @VicGovDH
UniProt @uniprot
11K Followers 569 Following UniProt is the central hub for the collection of functional information on proteins, with accurate, consistent and rich annotation.
AWS Cloud ANZ @AWSCloudANZ
17K Followers 632 Following Offical account for Amazon Web Services Australia & New Zealand. For support visit @AWSSupport
EnvModules @EnvModules
134 Followers 12 Following Environment Modules: provides dynamic modification of a user's environment
Quentin Gouil @QGouil
354 Followers 317 Following Senior Research Scientist at the Walter and Eliza Hall Institute -Epigenomics and long-read sequencing
Dr Dee Deveson Lucas @DeeDeveson
502 Followers 974 Following A molecular microbiologist interested in microbial genomics, transcriptomics, AMR and all things bioinformatics.
Josh Hardy @joshuamhardy
536 Followers 159 Following Structural biologist in Aus @WEHI. Cryo-electron microscopy of viruses and protein complexes. #cryoEM (He/Him)Trends for United States
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