Nilesh Kumar | Ph.D. @nilesh_uab
Spatial Computational Biologist | Computational Biologist @UAB_BDS. I use my programming skills to analyze and interpret biological data. 🧬🌱🌳 cas.uab.edu/smukhtarlab/te… Birmingham, AL Joined April 2010-
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Nilesh Kumar | Ph.D. retweeted
Interested in single cell genomics but need help getting started? Check out the full agenda for our Single Cell Genomics Day on Friday 4/25. All talks will be live-streamed (no registration required) at satijalab.org/scgd25
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Nilesh Kumar | Ph.D. retweeted
Check out our two new papers with new single-cell tech/methods/data! 1. Phospho-seq: Multi-modal profiling of intracellualar proteins nature.com/articles/s4146… 2. Systematic Perturb-seq of signaling regulators (2.6M cells, 6 cell lines, 1500 perturbations) nature.com/articles/s4155…
Nilesh Kumar | Ph.D. retweeted
Can DNA sequence models predict mutations affecting human traits? We introduce TraitGym, a curated benchmark of causal regulatory variants for 113 Mendelian & 83 complex traits, and evaluate functional genomics and DNA language models. Joint work w/ @gokcen and @yun_s_song 🧵👇
Can DNA sequence models predict mutations affecting human traits? We introduce TraitGym, a curated benchmark of causal regulatory variants for 113 Mendelian & 83 complex traits, and evaluate functional genomics and DNA language models. Joint work w/ @gokcen and @yun_s_song 🧵👇 https://t.co/ePHFsDzUmW
Nilesh Kumar | Ph.D. retweeted
Benchmarking gene embeddings from sequence, expression, network, and text models for functional prediction tasks biorxiv.org/content/10.110…
Pretty interesting 🧐 openai.com/index/introduc…
Nilesh Kumar | Ph.D. retweeted
Proud to have our work highlighted by the UAB eReporter. This would not be possible without a great team including, @lizworthey , @Bharat26oct, @nilesh_uab, @LukeSkyrunner and Austyn Trull ~Lara
Proud to have our work highlighted by the UAB eReporter. This would not be possible without a great team including, @lizworthey , @Bharat26oct, @nilesh_uab, @LukeSkyrunner and Austyn Trull ~Lara
Nilesh Kumar | Ph.D. retweeted
Read this #preprint on @researchsquare: PATHAK: An NLP-Based Method to Mine Gene and Function Relationships from Published Articles researchsquare.com/article/rs-426…
Nilesh Kumar | Ph.D. retweeted
Postdoc opening in Languages group at Google Deepmind based out of Bangalore Topics: LLMs, multilinguality, multimodality, RAI, etc. Strong candidates may apply by sending cv to [email protected] with [LLM-Postdoc] in subject by Apr 26 DM/email for any questions
Nilesh Kumar | Ph.D. retweeted
We are hiring! We have a open position for a PostDoc (2+1 years) in our group at the IPMB-Zurich to study epigenetic mechanisms that guide cell fate acquisition during plant embryogenesis. For more info and how to apply here: botinst.uzh.ch/en/aboutus/ope…
Project vacancies (Translational Bioinformatics Group) icgeb.org/project-vacanc… icgeb.org/wp-content/upl…
Nilesh Kumar | Ph.D. retweeted
So excited for our lab to attend AI retreat organized by @UAB_CAS. Thanks to @Bharat26oct @nilesh_uab Aqsa Majeed, @jinbaoliu96 from @SMukhtarlab
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