NODEL @nodeldesign

A feed about m(odel)ing the (n)atural world. Massachusetts, USA Joined April 2022

Tweets

46
Followers

328
Following

2K
Likes

3

NODEL @nodeldesign

3 years ago

“Abstract representations emerge naturally in neural networks trained to perform multiple tasks”, by W. Jeffrey Johnston and Stefano Fusi #deeplearning #AI #Bioinformatics nature.com/articles/s4146…

0 2 4 531 0

NODEL @nodeldesign

3 years ago

[TALK] "Machine learning-based design (of proteins, small molecules and beyond)," by Jennifer Listgarten & hosted by IAS #DeepLearning #Bioinformatics youtu.be/mkCyu6-N93k

0 3 6 0 0

Download Image

NODEL @nodeldesign

3 years ago

“A General Approach to Seismic Inversion with Automatic Differentiation,” by Weiqiang Zhu and Kailai Xu et al. #arXiv #DeepLearning arxiv.org/abs/2003.06027

0 0 2 0 0

🚨PAPER ALERT🚨 Introducing PocketMiner, a fast, accurate tool for predicting the locations of cryptic pockets from single protein structures. PocketMiner is a graph neural network whose speed enables proteome-wide predictions. #compchem #DeepLearning tinyurl.com/4c2jusr2

6 70 366 0 57

Download Image

Clarence Mah @clarencemah.bsky.social @mah_clarence

3 years ago

I am excited to finally share Bento, our toolkit for subcellular analysis of spatial transcriptomics data! @NoorsherAhmed biorxiv.org/content/10.110… (1/8)

4 29 104 0 15

NODEL @nodeldesign

3 years ago

"Serverless Prediction of Peptide Properties with Recurrent Neural Networks," by Mehrad Ansari and Andrew D. White #Bioinformatics #DeepLearning #bioRxiv biorxiv.org/content/10.110…

0 2 6 0 0

NODEL @nodeldesign

3 years ago

[TALK] "A deep learning approach to structural variant discovery," by Victoria Popic and Chris Rohlicek & hosted by @broadinstitute MIA #MachineLearning #Bioinformatics #AI youtu.be/EVlLqig3qEI

0 6 10 0 2

Download Image

Olivier Elemento @ElementoLab

3 years ago

This mind-blowing research in @Nature shows that machine learning can effectively guide enzyme optimization and help create enzymes that degrade all kinds of plastic waste in record time 🤯nature.com/articles/s4158…

11 390 2K 0 254

Download Image

NODEL @nodeldesign

3 years ago

“DeepDrug: A general graph-based deep learning framework for drug-drug interactions and drug-target interactions prediction,” by Yin et al. #Bioinformatics #drugdiscovery #bioRxiv biorxiv.org/content/10.110…

0 10 42 0 12

NODEL @nodeldesign

3 years ago

"Fluid-driven transport of round sediment particles: from discrete simulations to continuum modeling," by Zhang et al. #Geoscience #Earth #arXiv eartharxiv.org/repository/vie…

0 0 2 0 0

Download Image

dana_peer @dana_peer

3 years ago

(1) I am pleased to share our BayesPrism algorithm in collaboration with the @charlesdanko lab, lead by the amazing @tinyichu who demonstrated incredible independence, innovation and technical chops in this work nature.com/articles/s4301…

5 39 239 0 43

NODEL @nodeldesign

3 years ago

“Simulate Time-integrated Coarse-grained Molecular Dynamics with Geometric Machine Learning,” by Xiang Fu and Tian Xie et al. #Bioinformatics #arXiv arxiv.org/abs/2204.10348

1 2 5 0 0

NODEL @nodeldesign

3 years ago

“GeneVector: Identification of transcriptional programs using dense vector representations defined by mutual information,” by Ceglia et al. #Bioinformatics #Genomics #bioRxiv biorxiv.org/content/10.110…

0 1 2 0 0

NODEL @nodeldesign

3 years ago

[TALK] “Geometric deep learning for functional protein design,” by Michael Bronstein & hosted by @the_IAS #MachineLearning #AI #Bioinformatics youtu.be/dUE-n_aSjJA

0 9 21 0 2

Download Image

Jeff Ruffolo @jeffruffolo

3 years ago

Excited to share IgFold, our new method for fast, accurate antibody structure prediction! IgFold achieves state-of-the-art accuracy for conventional paired antibodies and provides useful error estimates for its structures. biorxiv.org/content/10.110…

3 52 293 0 47

NODEL @nodeldesign

3 years ago

“Biocosmology: Towards the birth of a new science,” by Cortês et al. #Biology #arXiv arxiv.org/abs/2204.09378

0 0 1 0 0

NODEL @nodeldesign

3 years ago

"CREIME: A Convolutional Recurrent Model for Earthquake Identification and Magnitude Estimation," by Chakraborty et al. #MachineLearning #AI #Geoscience #DeepLearning #arXiv arxiv.org/abs/2204.02924

0 1 2 0 0

NODEL @nodeldesign

3 years ago

“Fragment-Based Ligand Generation Guided By Geometric Deep Learning On Protein-Ligand Structure,” by Alexander S. Powers, Helen H. Yu, Patricia Suriana, and Ron O. Dror #Bioinformatics #MachineLearning #AI #bioRxiv biorxiv.org/content/10.110…

0 2 5 0 0

NODEL @nodeldesign

3 years ago

"DeepRank-GNN: A Graph Neural Network Framework to Learn Patterns in Protein-Protein Interfaces," by M. Réau and N. Renaud et al. #Bioinformatics #MachineLearning #AI #bioRxiv biorxiv.org/content/10.110…

0 2 4 0 0

NODEL @nodeldesign

3 years ago

[TALK] “Representational Power of Graph Neural Networks,” by Stefanie Jegelka & hosted by the Institute for Advanced Study #MachineLearning #DeepLearning #AI youtu.be/USfNJNePDKQ