Robert Clark @omp_____

simulations and modelling Joined May 2023

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miro astore @miroastore

11 months ago

Excited to share the first project from my postdoc. We studied a ligand bound TRPV1 cryo-EM dataset with state of the art heterotgeneity methods, and developed a way to compare them with a technique we call CryoSVD. paper doi.org/10.1101/2024.1… CryoSVD github.com/flatironinstit…

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Syma Khalid @ProfSyK

a year ago

Our latest paper - led by @DhanushkaNush helped by @ConradoPedebos, Jan Marzinek & Peter Bond jbc.org/article/S0021-… @jbiolchem Polymyxin B1 in the E. coli inner membrane: a complex story of protein and lipopolysaccharide mediated insertion

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Simon Lichtinger @LichtingerSimon

a year ago

Out just now in @eLife: MD simulations combined with transport assays to study energy and substrate coupling in the mechanism of the mammalian peptide transporter PepT2. Work with Jo Parker, @inwardopen and @philbiggin . doi.org/10.7554/eLife.…

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Syma Khalid @ProfSyK

a year ago

New review from the group on insights from MD on titrable residues that drive bacterial RND efflux . Jointly authored by Kahlan & Robbie @KahlanNewman and @omp_____ @SKhalidLab cambridge.org/core/journals/…

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Khalid Lab @SKhalidLab

a year ago

Supporting our very own Robbie (@omp_____ ) who is representing our group at the @BiochemOxford Annual Recess!

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Simon Lichtinger @LichtingerSimon

2 years ago

Very excited to share a pre-print of my latest work on the alternating access mechanism of peptide transporters with @philbiggin and @inwardopen ! biorxiv.org/cgi/content/sh… Will be a talk and poster about this at @BiophysicalSoc annual meeting next week, so see you there!

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bioRxiv Biophysics @biorxiv_biophys

2 years ago

The mechanism of mammalian proton-coupled peptide transporters biorxiv.org/cgi/content/sh… #biorxiv_biophys

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Syma Khalid @ProfSyK

2 years ago

New review in which we at @SKhalidLab provide our vision for Computational Microbiology (applied to bacterial cell envelopes). Thank you to @Structure_CP for the specific invitation to write about. #computationalmicrobiology. authors.elsevier.com/sd/article/S09…

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Syma Khalid @ProfSyK

2 years ago

Come work in my lab in Oxford Biochemistry- Postdoc funded via @hecbiosim in collab with @arvindr_ at Argonne National Lab. We will do massive bacterial membrane simulations augmented with ML. jobs.ac.uk/job/DDF342/pos…. We are friendly, supportive lab in a beautiful city.

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Georgia Isom @GL_Isom

2 years ago

Excited to share that the first paper from the Isom lab is now available on Biorxiv! (biorxiv.org/content/10.110…). We have investigated YhdP at the molecular level to show that it forms an envelope-spanning bridge and that putative phospholipids are found inside this bridge!