cobrapy @open_cobrapy

#metabolic #Modeling in #Python preferably with @sbmlnews opencobra.github.io/cobrapy/ Joined May 2018

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cobrapy @open_cobrapy

5 years ago

If you are a #Python developer and active in the #COBRA field, please voice your opinion on potential synergies generated by github.com/opencobra/cobr… #PythonDevelopers #PythonProgramming

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cobrapy @open_cobrapy

6 years ago

We want to make getting help for cobrapy easier! If you dislike mailing lists as much as we do, cast your vote on where to ask questions: #Bioinformatics @StackExchange (bioinformatics.stackexchange.com) or #Biostars (biostars.org). Poll here dudle.inf.tu-dresden.de/cobra-help-pla…

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We are trying to make the cobrapy community more inclusive. We will add a code of conduct and are looking for members to join the committee that handles complaints. Get involved, no coding required! Hopefully the easiest job you ever took on 😉 DM or github.com/opencobra/cobr…

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Maureen Carey @MaureenACarey

6 years ago

results now on #BioRxiv at biorxiv.org/content/10.110… feedback welcome!

Maureen Carey @MaureenACarey

7 years ago

results now on #BioRxiv at biorxiv.org/content/10.110… feedback welcome!

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Jensen Lab @jensen_lab

6 years ago

A new class of random sampler for COBRA models: biorxiv.org/content/10.110…. Uniform coverage on difficult and non-convex models. Compatible with @TheCOBRAToolbox and @open_cobrapy. Available at github.com/jensenlab/gaps….

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cobrapy @open_cobrapy

7 years ago

We just released version 0.15.0 which includes a major revision of the SBML parser by @konigmatt. Also SBML groups by @MedlockGreg and convenient configuration by @synchon_mandal. Check it out directly with `pip install -U cobra` pypi.org/project/cobra/ and share your experience.

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cobrapy @open_cobrapy

7 years ago

Help shape model encoding and how models can be built in #cobrapy in future.

Maureen Carey @MaureenACarey

7 years ago

Help shape model encoding and how models can be built in #cobrapy in future.

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cobrapy @open_cobrapy

7 years ago

The results from our second user survey are in, giving a picture of the use of different Python versions and preferred help channels in the community.

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cobrapy @open_cobrapy

7 years ago

Dear community, most voters so far favor Python 3 and dropping support for Python 2, do you agree? Let us know until Friday 18 in our #cobrapy user survey goo.gl/forms/sZzT737i…

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cobrapy @open_cobrapy

7 years ago

Please join our second user survey goo.gl/forms/bv88ceTI… on the state of Python 2 and how to improve help channels.

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cobrapy @open_cobrapy

7 years ago

Curious about latest developments around #cobrapy? Interested in reading about the experience of contributing to open source tools? Our @gsoc student @synchon_mandal blogs about all his latest work medium.com/@synchon_mandal

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cobrapy @open_cobrapy

7 years ago

In tonight's release 0.13.0, we see backward incompatible additions for specific access to boundary reactions and the ability to compute minimal media! Thank you @Thaasophobia Find out more at github.com/opencobra/cobr…

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cobrapy @open_cobrapy

7 years ago

Just released version 0.12.1 which enables full capabilities for Gurobi, better non-optimal solution inspection, and improved summary functions plus numerous fixes. Read more on GitHub github.com/opencobra/cobr…

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cobrapy @open_cobrapy

7 years ago

Just out: First user survey of 2018! goo.gl/forms/RcFtqlRe… Help us prioritize our efforts. #Python #Metabolic #Modeling And more awesomeness: 0.12.0 release adds ROOM and geometric FBA thanks to @synchon_mandal 🎉