R2 Free Online Genome Datamining Platform @r2_microarray
R2: free online researcher friendly genome analysis and visualization platform. 2500 NCBI PubMed Citations #ngs #bigdata #datamining #datascience #dataviz r2.amc.nl Netherlands Joined April 2013-
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New datascope is now available in R2. Stem cell differentiation towards #neuroblastoma. By the Halbritter group. r2platform.com/halbritter24/
#medulloblastoma single-cell resource in r2.amc.nl R2 datascience platform for #oncology #researchers. No bioinformatics expertise needed. nocode Re-use public data to assess your hypotheses. millions of samplesat your fingertips
R2: Your Genomic Breakthrough, Just a Click Away! r2.amc.nl Online Open Genomics Discovery tool for Biomedical #researchers. No Bioinformatics needed and 100% nocode Join the family of 250.000+ users Today. #science
Happy #DNADay In r2.amc.nl, you can not only explore more than 3 million public transcriptome samples, but also thousands of WGS/WES #genomes R2 Online open Genome Discovery platform for #biomedical #scientists without the need for #bioinformatics skills / #nocode
Unlocking Genomic Insights, Without Limits. R2: Where Science Meets Simplicity. Visit r2.amc.nl and get started Today! #researchers, #biology, #phd
caR2oon: Typical day at #work... The #boss asks, and the researcher produces.. R2 #datascience tool for biomedical research r2.amc.nl #science
#didyouknow that the R2platform (r2.amc.nl) also has tools for #collaborative #science? R2 #communities allow any user to share data with one or more other users. We have recently updated the management tools for it. R2 genomics analysis 4 biomedical researchers
Explore the methylation and gene expression data from a #science advanced paper on #meningioma in r2.amc.nl R2: open, online discovery platform for researchers. nocode nor bioinformatics expertise needed to explore >2300 public resources. #DataAnalytics
Get rid of remembering those passwords. With the latest #update on r2.amc.nl it is now possible to sign in using your #google account. R2 datascience application for #researchers. nocode and no bioinformatics expertise needed. #science
Bring some color into your plots in seconds R2 is open, online & has more than 4 million samples publicly available. R2 can also host your genomics data. Check out now at: r2.amc.nl #Datavisualization
Prepare your #powerpoint slide in seconds using the R2 platform! Best of all.. R2 is open, online & has more than 4 million samples publicly available. R2 can also host your genomics data. Check out now at: r2.amc.nl
Milestone: The R2platform has been visited by 250000 unique ip addresses! We are really proud that so many #researchers have found our efforts valuable and cited r2.amc.nl 2500+ times in Pubmed. R2 open online #datascience platform for biomedical #science
#breastcancer #data set in r2.amc.nl R2 open online platform for #biomedical #oncology research No need for bioinformatics or coding to check hypotheses in R2 in more than 4 million public samples 2500+ citations in Pubmed
Did you spot an interesting gene during a talk at #aacr24? Check all about it within the r2platform r2.amc.nl R2 open free online #Genomics analysis & visualization #discovery platform for biomedical #researchers. No need 4 bioinfo/coding #aacr #aacr2024 #science
There is no more fulfilling way to spend your time than to explore the wonder of how your genes are making you possible.. every single day. Explore it in the free r2.amc.nl platform. #WorldHealthDay2024 #WorldHealthDay #MyHealthMyRight
Did you spot an interesting #gene during a #talk at #aacr24? Check all about it within the #r2platform ( r2.amc.nl ) #aacr #aacr2024 R2 #Genomics analysis & visualization #discovery platform for biomedical #researchers. No need for #bioinformatics / #coding
David R. Ghasemi @DavidRGhasemi1
693 Followers 519 Following Paediatric resident @UKEHamburg, scientist @UKEHamburg / @KiTZ_HD. Paediatric #oncology, #genetics. Opinions are mine only. #FollowTheScience 🇩🇪-Persian
R2:Online Genome Anal.. @r2_platform
1K Followers 5K Following Free online #datascience tool for #biomedical researchers. bioinformatics / #coding not needed. 2,500+ #PubMed citations #ngs #rnaseq #bigdata #data mining
BioDecoded @BioDecoded
9K Followers 5K Following A daily digest of 3 articles about biomedical research and tech industry, with an emphasis on bringing data science and AI to life science and medicine.
Maximilian Y. Deng @maxiydeng1994
487 Followers 777 Following Dr. | PGY-4 | physician-scientist @UKHD_radonc @uniklinik_hd @KiTZ_HD | neurooncology | pediatric oncology | alma mater @Uniheidelberg
Thessey @Thessey28035
1 Followers 455 Following
Aitana Haggberg @AitanHaggb
0 Followers 153 Following
UlaColclough @15k1a402IS2ql51
2 Followers 372 Following
Estella Bhaskar @BhaskEstel
2 Followers 156 Following
Mitzi Vogl @mitzi_vo
88 Followers 5K Following
Lakia Kniesel @l_kniese
65 Followers 5K Following
Maida Marcum @MaidaMarcu93331
85 Followers 5K Following
LeeRalph @JeHBSp48tgRyqN6
1 Followers 356 Following
Jane Munzer @JaneMunzer8609
60 Followers 5K Following
Aileen Secor @AileenSeco82313
66 Followers 5K Following
Jena Redick @JenaRedick12918
104 Followers 5K Following
Ludie Hakey @HakeyLud
77 Followers 5K Following
Yolonda Mulcahey @yolo_mulca
30 Followers 5K Following
Yuki Rumps @RumpsRu
30 Followers 5K Following
Lucille Paciorek @LucillePac69657
84 Followers 5K Following
Bulah Parker @BulahP72139
47 Followers 5K Following
Joy Cutlip @j_cutli
53 Followers 5K Following
Tina Han @tingfordha
1K Followers 4K Following Genomics scientist by day, amateur potter and yogi by night, who loves culture and nature. @MPI_MolGen Tweets are my own; RT ≠ endorsements. instagram/wawapot
Alessia Ehmer @AlessiaEhm94646
78 Followers 5K Following
Nousheen Zaidi @Nosheen_Z
2K Followers 839 Following Cancer Biologist | Intersectional Feminist | Animal Lover | Vegetarian| Felinetrovert https://t.co/9mawPsDvij…
Regina Cambi @CambiRegi
48 Followers 5K Following
Janelle Schnitz @JanelleSchni
85 Followers 5K Following
Randi Chessor @ChessorRa
76 Followers 5K Following
Beulah Bielefeld @BeulahBiel68971
110 Followers 5K Following
Freya-rose Lappe @rose_lappe31869
57 Followers 5K Following
Hansol Lim @HansolLim1
296 Followers 506 Following master from @mpiBrain and now PhD candidate @mpiforbi @IMPRS_LS ❤️ BLA(valence & social &metabolic) searching for next journey ! curiosity guides me !
Arlean Holst @HoArlea
108 Followers 5K Following
Tonja Marsolek @MarsolekTo89734
82 Followers 5K Following
Poppy Poxon @PoppPox
88 Followers 5K Following
Harmony Brookens @BrookensHarmon
90 Followers 5K Following
Mairi Khouri @KhourMair
36 Followers 5K Following
Nan Dennie @DennieNan2653
76 Followers 5K Following
Adley Santopietro @SantopieAdl
82 Followers 5K Following
Lola Preciado @lol_preci
77 Followers 5K Following
Amelia_Mitch @AmeliaMitc8438
31 Followers 2K Following
Poppy-rose Brozena @PBrozena17803
92 Followers 5K Following
Cierra Arcement @cierra16086
81 Followers 5K Following
Elena Varoni @ElenaVaroni
307 Followers 369 Following Associate Professor #Dentist, #Oralmedicine & #biomaterials specialist, Director of #DentalHygiene course, University of Milan; PhD in #Biotechnologies;#runner!
McTaytea @taytea70683
38 Followers 2K Following
Assunta Climer @assun_clim
82 Followers 5K Following
Roushear @roushear98780
60 Followers 2K Following
Ming "Tommy" Tang @tangming2005
31K Followers 2K Following Director of computational biology. On my way to helping 1 million people learn bioinformatics. Educator, Biotech, single cell. Also talks about leadership.
Oded Rechavi @OdedRechavi
140K Followers 1K Following Don't be fooled by the rocks that I got, I'm still Oded from the block. TED: https://t.co/rcOm9TSTf5 Huberman Lab Podcast: https://t.co/xZTNlx9nbi
Hopp-Kindertumorzentr.. @KiTZ_HD
1K Followers 256 Following KiTZ combines patient care and cancer research under one roof to understand, treat and defeat childhood cancer. Joint institution of #DKFZ #UKHD #Uni_HD
David R. Ghasemi @DavidRGhasemi1
693 Followers 519 Following Paediatric resident @UKEHamburg, scientist @UKEHamburg / @KiTZ_HD. Paediatric #oncology, #genetics. Opinions are mine only. #FollowTheScience 🇩🇪-Persian
DKFZ @DKFZ
15K Followers 190 Following Das Deutsche Krebsforschungszentrum (DKFZ) ist die größte biomedizinische Forschungseinrichtung in Deutschland. Wir forschen für ein Leben ohne Krebs.
nature @Nature
2.6M Followers 4K Following Research, News, and Commentary from Nature, the international journal of science. For daily science news, get Nature Briefing: https://t.co/wGmQlQ8a4D
antisense. @razoralign
13K Followers 65 Following We do not know about death, because we never know about life. https://t.co/5L9IhaBKH5
Fabian Theis @fabian_theis
29K Followers 446 Following Computational biologist @HelmholtzMunich, prof @TU_Muenchen & associate PI @sangerinstitute. Dad of 4 and mountain lover. Department news, see @CompHealthMuc
Lior Pachter @lpachter
44K Followers 2K Following Bren Professor of Computational Biology @caltech. Blog at https://t.co/FFQzhEsmhi. Tweets represent my views, not my employer's. #methodsmatter
DNA&RNA Universe 𝕏 @DNA_RNA_Uni
40K Followers 11K Following 𝗧𝗵𝗲 𝘀𝗰𝗶𝗲𝗻𝗰𝗲 𝗼𝗳 𝘁𝗼𝗱𝗮𝘆 𝗶𝘀 𝘁𝗵𝗲 𝘁𝗲𝗰𝗵𝗻𝗼𝗹𝗼𝗴𝘆 𝗼𝗳 𝘁𝗼𝗺𝗼𝗿𝗿𝗼𝘄🧬 #scicomm @kilobaser_DNA @NorgenBiotek @longescience @plantwave_
R2:Online Genome Anal.. @r2_platform
1K Followers 5K Following Free online #datascience tool for #biomedical researchers. bioinformatics / #coding not needed. 2,500+ #PubMed citations #ngs #rnaseq #bigdata #data mining
Nature Portfolio @NaturePortfolio
2.2M Followers 2K Following Nature Portfolio’s high-quality products and services across the life, physical, chemical and applied sciences is dedicated to serving the scientific community.
Itai Yanai 💔 @ItaiYanai
24K Followers 2K Following Professor at the NYU School of Medicine. Co-host of the 'Night Science Podcast' https://t.co/Sy1rcWXGLz @nightsciencepod
Sebastian S. Cocioba�.. @ATinyGreenCell
25K Followers 8K Following Amateur 🌿 Biologist • Aspiring 🌺 Designer Researcher at Binomica Labs • Degreeless Heathen • Petunia Breeder • Open Lab Notebook: https://t.co/umYTLluuuw
dana_peer @dana_peer
13K Followers 167 Following
SNO @NeuroOnc
10K Followers 507 Following A multidisciplinary society of healthcare professionals dedicated to promoting advances in neuro-oncology through research and education.
The Winkler Lab @Winkler_Lab
4K Followers 606 Following Understanding and targeting the neurobiology of brain tumors and beyond in space and time @uniklinik_hd @DKFZ @[email protected]
Ewan Birney @ewanbirney
50K Followers 2K Following Deputy Director General of EMBL, Director of EMBL-EBI. I have an insatiable love of biology. @[email protected]. I also work with ONT, Dovetail + GeL.
Mick W@tson ↙️ @BioMickWatson
30K Followers 3K Following Bioinformatics | (meta) genomics | Data science. Some politics. Views are all my own and do not represent past, current or future employer.
RNA-Seq Blog @RNASeqBlog
9K Followers 5K Following Transcriptome Sequencing Research & Industry News
Johanna Joyce Lab @Joycelab
4K Followers 50 Following Lab of @Johanna_A_Joyce @unil @OncoUNILCHUV @Ludwig_Cancer #AGORA We are dedicated to exploring & exploiting the #TumorMicroenvironment #Metastasis #BrainTIME
Teichlab @teichlab
6K Followers 70 Following Using genomics & bioinformatics to decipher immunity @sangerinstitute @humancellatlas
Valentine Svensson @vallens
4K Followers 931 Following Molecular cell biology and statistics, mostly scRNA-seq in the immune system. Scientist at Altos Labs. Some photography as well.
EANO @EANOassociation
4K Followers 492 Following European Association of Neuro-oncology, multidisciplinary society, Clinical Trials, Research, Education #EANO2024 #btsm #neurooncology #braintumor #Cancer
KenOliveLab @KenOliveLab
4K Followers 402 Following Asc Prof. of Medicine, Columbia University, views own. Pancreatic cancer, translational therapeutics, metabolism, systems, paracrine interactions. It all fits.
Scott Tyler (@Science.. @ScienceScottT
1K Followers 750 Following Developing new single cell omics methods and bench validating all the hypotheses those techniques give us. Opinions expressed are my own.
Dr. Rebecca B. Riggin.. @Prof_Riggins
3K Followers 2K Following Assoc Prof, AD Educ & Training @LombardiCancer. #lobular, HER2+/ER+ BrCa, #nuclearreceptors, #GBM. Co-founder @NR_IMPACT. @profriggins.bsky.social she/her
Daniel E. Frigo, Ph.D.. @DanielFrigo
969 Followers 569 Following Professor, Departments of Cancer Systems Imaging and Genitourinary Medical Oncology, @MDAndersonNews. Specializing in #prostatecancer. Tweets are mine
Lukas Bunse @L_Bunse
375 Followers 354 Following Resident in Neurology at @uniklinik_mannheim @UniHeidelberg @DKFZ @ResearchLifesci @Platten_lab with a focus on #immunotherapy of #glioma #braintumors
Maximilian Schoenung @MaxSchoenung
401 Followers 568 Following Scientist @DKFZ @NCT_HD @TMO_Heidelberg @TransCanEpi. Tell me about epigenetics, stem cell biology and leukemia.
spence fast 🧬 @spencef
780 Followers 1K Following Scientist, Science Enthusiast & Communicator. Science and Technology Advisor at 10x genomics. He/Him. Ally. All tweets are my own.
Areeba Patel @AreebaSpeaks
332 Followers 418 Following Nanopore-seq / computational histopathology for 🧠 tumours @sahm_lab & @MoritzGerstung group @dkfz #PhDatDKFZ | #MResCB @imperialcollege alum | Views are my own
Vidhya Ravi- Brain Mo.. @Vidhya1227
831 Followers 2K Following Head of 3D Brain Models Lab , Personalised models, #Microenvironment , @uniklinik_fr #WomeninScience #3R Chief Organizer of https://t.co/C05uIMZL28
Elizabeth Crouch, MD/.. @ElizabetsCrouch
1K Followers 966 Following Neonatologist, neuroscientist, vascular biologist @UCSFChildrens. Studying vascular development, germinal matrix hemorrhage @ https://t.co/H5qBVQJuYw she/her
Iowa_Genetics @IIHG_Genetics
1K Followers 1K Following The Iowa Institute of Human Genetics (IIHG) is a statewide resource to promote clinical care, research, & education on advances around the human genome.
Mikhael Dito Manurung @mikhaeldito313
913 Followers 2K Following Investigating the #immunology of infection and vaccination with #singlecell #multiomics. Curating single-cell news and conversations on https://t.co/RUQfOpNXNf
Stein Aerts @steinaerts
4K Followers 654 Following Computational biologist interested in deciphering the genomic regulatory code | Director https://t.co/tdfwR4ZJdY
The DECIPHER Project @deciphergenomic
2K Followers 107 Following Enabling #matchmaking and interpretation of phenotype-linked pathogenic genetic variation in patients with #raredisease by effective #datasharing.
Mikala Egeblad @megeblad
3K Followers 670 Following Professor at Johns Hopkins University. Working to prevent cancer from spreading and becoming resistant to therapy. @[email protected]
The Single Cell World @singlecellworld
1K Followers 489 Following Unlocking the 🌎 of Single-Cell & Spatial Omics 🔬One cell at a time! 🔄 Building a community | Cátia Moutinho, PhD
Tina Han @tingfordha
1K Followers 4K Following Genomics scientist by day, amateur potter and yogi by night, who loves culture and nature. @MPI_MolGen Tweets are my own; RT ≠ endorsements. instagram/wawapot
Andrea Ventura @aventura71
3K Followers 2K Following MD/PhD. Group leader at Memorial Sloan Kettering, studying non-coding RNAs and cancer. Opinions are mine. Retweet != endorse. “Je cherche à comprendre”.
Jens Schmidt @jenscs83
2K Followers 2K Following Cancer Biologist, Husband, Father. Interested in Genomic Integrity, Single Molecule Microscopy. TT- @michiganstateu, Grad - @MITBiology, PD - @BioFrontiers.
Magda Grabowska, PhD @mmgrabow
2K Followers 1K Following Cancer biologist. Once an academic PI, now Senior Director of Scientific Engagement @bioskryb. Tweets/views/cats mine.
Eric 🏳️🌈 @EricHastie
2K Followers 2K Following Assistant Professor (Teaching) / virologist/cancer biologist turned wormer. Passionate about undergraduate education and inclusive teaching. 🏳️🌈 (he/him)
Nousheen Zaidi @Nosheen_Z
2K Followers 839 Following Cancer Biologist | Intersectional Feminist | Animal Lover | Vegetarian| Felinetrovert https://t.co/9mawPsDvij…
Juliet Daniel @bajanjules27
2K Followers 1K Following Professor & Proud Bajan-born Cancer Biologist studying Kaiso & racial disparities in cancer. EDI advocate.
K. Leigh Greathouse @CancerMicrobes
817 Followers 1K Following Cancer biologist/dietitian | cancer survivor | developing dietary and microbial tools to improve cancer treatment | #MentorFirst | Associate Prof | @Baylor
Alex Toker @alex_toker
2K Followers 981 Following Cancer biologist, studying protein kinases in cancer, lover of music and father to 4 magnificent children.
Vivek Mittal @mittallab
636 Followers 283 Following Scientist, New Yorker, Weill Cornell Medical Center. Cancer Biologist, Lung and Breast cancer basic and translational research. Views are my own.
Hani Goodarzi @genophoria
4K Followers 1K Following Core Investigator @arcinstitute | Associate Professor @Ucsf_Biochem @UCSFurology @UCSFCancer | {Computational, Cancer, RNA} biologist
Dr. Katerina Politi @politikaterina
2K Followers 433 Following Cancer biologist at Yale University- Views are my own
Ana Luisa Correia @alpcorreia
2K Followers 347 Following Cancer biologist @ChampalimaudF. Principal Investigator @ Cancer Dormancy & Immunity Lab. Dedicated to finding new ways to treat metastatic breast cancer.
Graham Dellaire🎸�.. @DocDellaire
3K Followers 552 Following 🇨🇦 Cancer biologist, guitarist, would-be evolutionary molecular biologist, bread baker, sometimes coder, microscopist, & gardener. Joined 2017, verify below.
Monica Reyes @CancerBiologist
3 Followers 13 Following
Afshin Samali @Afshin_Samali
2K Followers 862 Following Cancer Biologist, Professor, Refugee, pationate about Education for all and Equality
Bobby Bowman @bowman_rl
2K Followers 1K Following Cancer Biologist. Studying leukemia with mouse models and single cell genomics. @Penn_CBIO. Visually impaired. Vote, a lot. Views are my own.
Alejandro Sweet-Corde.. @ASweetcordero
712 Followers 377 Following Pediatric oncologist and cancer biologist at @UCSF. Interested in understanding how cancers resist therapy and metastasize. Classical Guitar enthusiast.
Sandra Ryeom @swr_sws
292 Followers 956 Following #HICCC, #CUIMC, #DEI, Cancer Biologist focused on the tumor microenvironment, upper GI cancer and cancer in individuals with Down syndrome
Qingfei Zheng @QZ_ChemSynBiol
804 Followers 2K Following Chemical/Synthetic Biologist interested in Epigenetics, Microbiome, Drug Discovery; Guinea Pig Lover
Nisha Thakur @DrNishaKThakur
1K Followers 858 Following Cancer biologist | Tumor micro-environment | Immunotherapy | Macrophage enthusiast #Mom #womeninstem RT≠endorsement
Michael A Schwalke @DrSchwalke
784 Followers 1K Following DrSchwalke is a breast surgeon, author, and tumor biologist who has devoted his career to the care of women with benign and malignant breast disease.
Tomas Garzon-Muvdi @GarzonMuvdi
1K Followers 561 Following Neurosurgeon and skull base surgeon at Emory University, brain tumor biologist and immunologist
Tobias Bald @Doc_Bald
501 Followers 621 Following I am a tumor biologist and immunologist studying the phenotypic plasticity of cells in the tumor microenvironment.
Zheng Hu @huzheng1
797 Followers 1K Following Evolutionary & computational biologist | tumor evolution | clonal dynamics | lineage tracing | Principal Investigator @ SIAT, CAS, China
Şevin Turcan @sevin_turcan
766 Followers 355 Following Brain tumor biologist @uniklinik_hd and @NCT_HD.
Will Hill @DrWilliamHill
1K Followers 2K Following Cancer cell biologist | Heterotypic cell-cell interactions and tumour evolution | postdoc @SwantonLab @TheCrick. Views my own
Dr Hannah Bolland @onco_hannah
932 Followers 2K Following Cancer biologist, lover of tumour hypoxia, peroxisomes, unfolded protein response. Junior Group Leader/Surrey Future Fellow @UniOfSurrey @SurreyVet
Julian Downward @JulianDownward
1K Followers 115 Following Cancer biologist at the Francis Crick Institute. Working to develop cures for lung cancer by reactivating the body's immune system against the tumour.
Sara Zanivan @ZanivanLab
2K Followers 755 Following Cell biologist, passionate about tumour microenvironment, CAFs, metabolism and MS-proteomics. Tweets are my own @CRUK_SI 🇪🇺New datascope is now available in R2. Stem cell differentiation towards #neuroblastoma. By the Halbritter group. r2platform.com/halbritter24/
New public resource added to r2.amc.nl belonging to: Patient-derived xenograft platform for metastatic melanoma: RNA sequencing of 95 #melanoma PDX samples R2 #datascience for every researcher. No expertise needed to check your hypotheses
New public resource added to r2.amc.nl belonging to: Super enhancer dysregulation in #rhabdoid tumor cells is regulated by the SWI/SNF ATPase BRG1 R2 open online genome discovery platform for the wetlab #biologist nocode and no bioinfo expertise required
R2: Your Genomic Breakthrough, Just a Click Away! r2.amc.nl Online Open Genomics Discovery tool for Biomedical #researchers. No Bioinformatics needed and 100% nocode Join the family of 250.000+ users Today. #science
Happy #DNADay In r2.amc.nl, you can not only explore more than 3 million public transcriptome samples, but also thousands of WGS/WES #genomes R2 Online open Genome Discovery platform for #biomedical #scientists without the need for #bioinformatics skills / #nocode
The MegaSampler tool within the R2platform allows you to quickly check the expression across different resources. Here we show ESR1 in #breastcancer, normal , #cell lines and experiments. R2 open online #datamining tool for researchers in #Science r2.amc.nl
Explore the methylation and gene expression data from a #science advanced paper on #meningioma in r2.amc.nl R2: open, online discovery platform for researchers. nocode nor bioinformatics expertise needed to explore >2300 public resources. #DataAnalytics
Sample_maps (tSNE, UMAP etc) within r2.amc.nl can easily be updated using color_mode. R2 genomics platform for #biomedical #science
Get rid of remembering those passwords. With the latest #update on r2.amc.nl it is now possible to sign in using your #google account. R2 datascience application for #researchers. nocode and no bioinformatics expertise needed. #science
Prepare your #powerpoint slide in seconds using the R2 platform! Best of all.. R2 is open, online & has more than 4 million samples publicly available. R2 can also host your genomics data. Check out now at: r2.amc.nl
Milestone: The R2platform has been visited by 250000 unique ip addresses! We are really proud that so many #researchers have found our efforts valuable and cited r2.amc.nl 2500+ times in Pubmed. R2 open online #datascience platform for biomedical #science
The difference in @10xGenomics' Cell Ranger's default between version 6 and 7 is discussed in this thread, but it's such a big deal that it's worth its own thread. tl;dr: in v7 Cell Ranger changed how it produces the gene count matrix leading to a huge difference in results. 1/
The choice of whether to use Seurat or Scanpy for single-cell RNA-seq analysis typically comes down to a preference of R vs. Python. But do they produce the same results? In biorxiv.org/content/10.110… w/ @Josephmrich et al. we take a close look. The results are 👀 1/🧵
Did you spot an interesting #gene during a #talk at #aacr24? Check all about it within the #r2platform ( r2.amc.nl ) #aacr #aacr2024 R2 #Genomics analysis & visualization #discovery platform for biomedical #researchers. No need for #bioinformatics / #coding
@lpachter One way to help biologists understand the limits of these tools is to visualize the KNN in UMAP space versus the KNN in high-d space. Here is the "pbmc 3k" dataset, where I do that using my KNN modification of Sleepwalk (S. Ovchinnikova and S. Anders).
I am delighted to share a preprint of our *Guide to k-mer approaches for genomics across the tree of life* By Katie Jenike, @lucia_camdom @mariloubodde @IslandGenomics @chodson_evo @mike_schatz & myself. arxiv.org/abs/2404.01519 Some of the things you can find inside 👇
Extended #singlecell #resource added to r2.amc.nl Colon organoid co-culture (fibroblast, macrophage) samples with different gene mutations towards CRC oncogenesis a great set to test #hypotheses, without a hassle.. All data in R2 is ready to be queried #Science
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