aln🇺🇦 @systemnaBio
Systems Biology, Bioinformatics and other fun things🥃 Mastodon: @[email protected] github.com/alnf Ukraine Joined December 2013-
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aln🇺🇦 retweeted
Select your cell: I'm prototyping an interactive sc RNA-seq portal where the UMAP is dynamically linked to morphing 3D artistic renders of each cell type. You can play with the initial build below.
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aln🇺🇦 retweeted
Center of Kyiv, two Russian missiles hit a regular residential area
aln🇺🇦 retweeted
anndata 0.12 is out now! We have lots of great features that we hope address some persistent needs. Here are some of the highlights!
aln🇺🇦 retweeted
We often talk about pangenome reference but what does "reference" mean? If it means the whole graph, what is a variant? My collaborators Pouria and Luke give a clean answer: the reference is a spanning tree including GRCh38 and variants are leftover edges. See preprint for more.
We often talk about pangenome reference but what does "reference" mean? If it means the whole graph, what is a variant? My collaborators Pouria and Luke give a clean answer: the reference is a spanning tree including GRCh38 and variants are leftover edges. See preprint for more.
The 19th International Conference on Data and Text Mining in Biomedical Informatics, 15-18 December 2025 (Muju, Republic of Korea) I will be a speaker! dtmbio.net
Latest preprint from the lab (and the last chapter from Shaojun Pan's PhD thesis) Making strobealign nimbler and faster! biorxiv.org/content/10.110…
aln🇺🇦 retweeted
Russia killed 31 people in Kyiv yesterday night. Among them were five children. The youngest victim was just two years old. 159 people were injured, including 16 children. 🕯️
aln🇺🇦 retweeted
The death toll from yesterday's barbaric russian attack on Kyiv has risen to 31 — including five children.
Re-reading an old grant proposal (from 2023) and marveling that we used to write these without LLMs
aln🇺🇦 retweeted
And the #CAMDA25 team continues with the celebration (including a visit to the super lambanana), wishing them all the best and looking forward to seeing you next year in the #ISMBECCB2025
aln🇺🇦 retweeted
А порадьте якийсь хороший наукпоп (можна англійською) на фізичну тематику, щоб позакривати в голові різні прогалини, які лишилися зі школи
aln🇺🇦 retweeted
Celebreting a busy & sucessfull #ISMBECCB2025
aln🇺🇦 retweeted
Kinga Zielińska (Jagiellonian Univ.) opens the #CAMDA25, #ISMBECCB2025 the Gut Microbiota Challenge: Can we build a better microbiome health index? With 4,398 samples & taxonomic + functional data, participants are encouraged to go beyond GMHI & hiPCA
aln🇺🇦 retweeted
David Danko (Biotia Inc.) presents BIOTIA-DX Resistance at #CAMDA25, #ISMBECCB2025, a clinically validated metagenomic workflow adapted for AMR prediction. With curated global data and stringent preprocessing, the tool reached an F1 score of 84 on the challenge test set
aln🇺🇦 retweeted
Owen Visser (Univ. of Florida) presents an ensemble ML model for AMR prediction at #CAMDA25, #ISMBECCB2025. Trained on strain-specific markers & AMR gene classes, achieving up to 98.2% accuracy (A. baumannii). Permutation analysis reveals key resistance genes in diverse pathogens
aln🇺🇦 retweeted
aln🇺🇦 retweeted
Now, Alper Yurtseven (Helmholtz Institute) tackles #AMR at #CAMDA25, #ISMBECCB2025 by predicting resistance across 9 key bacterial species using machine learning. With a focus on scalable, cross-species models in the fight against antimicrobial resistance.
aln🇺🇦 retweeted
🔬 Ever wonder how your immune system ages? 📊 We used single-cell multi-omics (RNA + ATAC) + bulk ATAC on PBMCs to build a cell-by-cell map of aging. 🧠 Find out which genes fade, which chromatin gates close and why some immune systems age slower. 👉 Poster C-482 #ISMBECCB2025
aln🇺🇦 retweeted
Honored to open day two of #BOSC2025 and BOKR joint session at #ISMBECCB2025 introducing @chrismungall opening keynote: Open Knowledge Bases in the Age of Generative AI
aln🇺🇦 retweeted
A strong tour by @GiuliaCesaro4 on cell cell Communication and intra celular signaling at ISMB
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353 Followers 138 Following 愛知県の名城大学の学生中心で活動しています🧑🎓👩🎓当団体の活動に興味を持ってもらえると嬉しいです☺️ 活動報告は固定ツイート又はいいね欄から✈️スレッドに報告が続きます🌱気軽にフォローしてください🙏 #拡散希望 科学部ネットワーク所属 ⭐️インスタはこちらのリンクから👇Trends for United States
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