WEBKNOSSOS @webknossos
Visualize, share, segment, and annotate your large 3D images online. #opensource #volumeEM #bioimageanalysis #connectomics #zarr Bluesky: @webknossos.org webknossos.org Joined December 2018-
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🌟Enhancements🌟 Use Ctrl + Shift + Left, Ctrl + Shift + Right, Ctrl + Shift + Up and Ctrl + Shift + Down to rotate in 90 degree increments Learn more about keyboard shortcuts: docs.webknossos.org/webknossos/ui/…
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Tuesday tips 🐾 for Beginners Did you know about the 3D viewport settings? You can choose whether to display the planes, only show their wireframes, or display them along with the data. You also have the option to show the dataset border and the layer borders Check out the…
🌟Enhancements🌟 ICYMI: Webknossos viewports are now rotatable. Use keyboard shortcuts to rotate the orthogonal viewport. Try Shift + Left, Shift + Right, Shift + Up and Shift + Down. Learn more about keyboard shortcuts: docs.webknossos.org/webknossos/ui/…
Tuesday tips 🐾 for Beginners Did you know you can use the shortcuts K and L to toggle the sidebars in WEBKNOSSOS? You can also use '.' to maximize a viewport. Check out the Youtube Playlist for more tips: youtube.com/playlist?list=…
🌟Big new feature🌟 Rotate the viewports. You can now freely rotate the orthogonal viewports. Trace your objects in the best angle.
Tuesday tips 🐾 for Beginners Did you know that you can toggle crosshairs and scalebars on or off in WEBKNOSSOS? Simply go to the settings in the left sidebar and customize your view. Check out the Youtube Playlist for more tips: buff.ly/M3nCDIL
🌟Enhancement🌟 If you copy the position to your clipboard (e.g. from Webknossos, an email from a colleague or your notes), you can now paste the position anywhere in the Webknossos UI. No need to activate the position control.
Tuesday tips 🐾 for Beginners Did you know you can create bounding boxes? They help define regions of interest, export specific data, and more! Check out the Youtube Playlist for more tips: youtube.com/playlist?list=…
🌟Enhancement🌟 Make the 3D meshes of your segments translucent. Great for revealing inner segments, such as as cell organelles. Also, translucent meshes look really cool 😎
Tuesday tips 🐾 for Beginners Did you know you can customize skeleton colors? Let WEBKNOSSOS choose a color for your tree or select your preferred shade by right-clicking and choosing 'Change Tree Color'. Check out the Youtube Playlist for more tips: youtube.com/playlist?list=…
🌟Enhancement🌟 Only show selected segments. Toggle the “Hide unlisted segments” setting to pick which segments will be shown.
Tuesday tips 🐾 for Pros Did you know you can easily decide whether you want to overwrite while annotating? For example, when using the eraser, just press “Shift” to remove only the active segment. This shortcut also works for the brush and lasso! Check out the Youtube…
🌟Enhancement🌟 Navigate WEBKNOSSOS faster with the new Command Palette. It allows you to streamline your workflow by quickly searching for tools, jumping to specific datasets, and accessing key features with just a few keystrokes. Activate with 'Ctrl/Cmd + P'
Tuesday tips 🐾 for Pros While using the brush, press and hold ‘Shift’ to temporarily activate the segment picker - or ‘Shift + Ctrl’ to switch to the eraser. Check out the Youtube playlist for more tips: youtube.com/playlist?list=…
Working with large datasets? Watch our workflow video to learn how to upload, organize with folders and metadata, set access permissions, and more - making data management seamless.
Tuesday tips 🐾 for Pros To move a bounding box, simply make sure the bounding box tool is activated, hold ‘Ctrl’ and drag the box to reposition it.
🌟Enhancement🌟 You can now edit segment or skeleton tree names by double-clicking their entry in the list - or change their names directly the metadata tab. Plus, you can now double-click on a segment in the segmentation to activate it!
Tuesday tips 🐾 for Pros Save your view settings as default! This way, when someone opens your dataset, they’ll see the exact same view as you. Check out the Youtube playlist for more tips: youtube.com/playlist?list=…
Carles Bosch (Francis Crick Institute) discussed at the vEM Data Challenges Symposium how correlative 2-photon and X-ray imaging uncovers neural computation in olfactory circuits, advancing our understanding of brain function. Unfortunately, there was an issue with the…
🚀 Advancing Retinal Connectomics! Prof. David Berson from Brown University discussed strategies for large-scale segmentation in retinal connectomics at the vEM Data Challenges Symposium. 🎥 Watch the recorded session here: (youtu.be/vO8lro_wlz8?fe…)
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