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Vikas Yadav @vy_vim

Jammu, Jammu & Kashmir, India Joined October 2020
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Vikas Yadav retweeted
jkagan1 Profile Picture

Jonathan Kagan @jkagan1

6 months ago

The term PAMP (pathogen associated molecular pattern) is in the immunology lexicon. But what does pattern really mean? We need diverse ligands for a single receptor to decipher a pattern. LPS receptors, which detect non-LPS structures, may hold the key to answer this question.

Vikas Yadav retweeted
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Structura Biotechnology @structurabio

9 months ago

1/ A new series of #CryoSPARC tutorial videos from this year’s S2C2 #cryoEM image processing workshop are now online! These videos will be interesting to all users and especially those newer to #cryoEM. youtube.com/playlist?list=…

Vikas Yadav retweeted
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Sam Altman @sama

9 months ago

today we are announcing reinforcement finetuning, which makes it really easy to create expert models in specific domains with very little training data. livestream going now: openai.com/12-days/ alpha program starting now, launching publicly in q1

Vikas Yadav retweeted
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ShorterLab @ShorterLab

10 months ago

AlphaFold-Multimer accurately captures interactions and dynamics of intrinsically disordered protein regions | PNAS pnas.org/doi/10.1073/pn…

Vikas Yadav retweeted
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Sonja Welsch @sonjawelsch

10 months ago

There we go🤷. We have #alphafold3, @alexjamesnoble's VirtualIce, a plethora of (nearly) automated 3D reconstruction tools, #ModelAngelo... and AIs that can generate hypotheses, test them and write papers. #cryoEM can go home I guess.

skdh Profile Picture

Sabine Hossenfelder @skdh

10 months ago

There we go🤷. We have #alphafold3, @alexjamesnoble's VirtualIce, a plethora of (nearly) automated 3D reconstruction tools, #ModelAngelo... and AIs that can generate hypotheses, test them and write papers. #cryoEM can go home I guess.

Vikas Yadav retweeted
jkagan1 Profile Picture

Jonathan Kagan @jkagan1

11 months ago

Everything you wanted to know about the Big Three DNA Sensors: AIM2, cGAS, TLR9. Several suppritive characters also discussed. A must read authoritative review by Fitzgerald. @FitzgeraldKate nature.com/articles/s4159…

Vikas Yadav retweeted
kellogg_liz Profile Picture

Liz Kellogg ❄️🔬 @kellogg_liz

11 months ago

Dear cryo-EM women scientists, We want to honor you and your contributions at BPS 2025. This year, the Cryo-EM subgroup will honor a mid/senior-career woman scientist as the inaugural June Almeida awardee. June Almeida is the virologist who first discovered the coronavirus in…

Vikas Yadav retweeted
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Leslie Vosshall PhD @leslievosshall

12 months ago

Imagine if you woke up this morning and found that the NIH-funded database that holds all of the data that you and thousands of other scientists around the world consult every day was turned off. Gone. Despite many efforts by a community of scientists to lobby @NIH @NIHDirector…

Vikas Yadav retweeted
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Scholarship for PhD @ScholarshipfPhd

a year ago

Vikas Yadav retweeted
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Mohammed AlQuraishi @MoAlQuraishi

a year ago

Main paper: rdcu.be/dHS5F OpenProteinSet paper: arxiv.org/abs/2308.05326 GitHub repo: github.com/aqlaboratory/o… OpenProteinSet AWS: registry.opendata.aws/openfold/ Now, as for AF3: Yes! :-)

Vikas Yadav retweeted
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Diego del Alamo @DdelAlamo

2 years ago

“PEP-Patch: Electrostatics in Protein-Protein Recognition, Specificity and Antibody Developability” A Python package for calculating electrostatic patches in antibodies biorxiv.org/content/10.110…

Vikas Yadav retweeted
PDBeurope Profile Picture

Protein Data Bank @PDBeurope

2 years ago

Interested in macromolecular interactions? Our new PISA-lite software generates more interaction data than ever, with detailed information on individual interfaces and atom-atom interactions. Data access is through PDBe API endpoints and JSON files. 🔗 ebi.ac.uk/pdbe/news/impr…

vy_vim Profile Picture

Vikas Yadav @vy_vim

3 years ago

vy_vim Profile Picture

Vikas Yadav @vy_vim

3 years ago

EricTopol Profile Picture

Eric Topol @EricTopol

3 years ago

Vikas Yadav retweeted
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Cristina Paulino @CPaulino_

3 years ago

Check out our newest review on #cryoEM (of membrane proteins) at 200 keV. Take home message: don’t treat your 200keV TEM only as a screening machine 😉. Fantastic work by @chancie_t and @rheinbergerj 👇🏼 sciencedirect.com/science?_ob=Ga…

Vikas Yadav retweeted
MiTeGen Profile Picture

MiTeGen @MiTeGen

3 years ago

If you are at the 9th New England Cryo-EM symposium, be certain to stop by the poster being presented by our wonderful team member, Adrienne Wooster. We are highlighting lots of great new tools and innovations for cryo-EM sample prep. #cryoem #proteins #postersession

Vikas Yadav retweeted
Joel_S_Bloch Profile Picture

Joël Bloch @Joel_S_Bloch

3 years ago

Cryo-EM structure of a voltage-gated ion channel in polarized vesicles. Super cool work from my colleague Shiva in the MacKinnon lab! pnas.org/doi/10.1073/pn…

Vikas Yadav retweeted
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Alice Clark @AtomsAlice

3 years ago

Really exciting to teach our bioinformatics students cutting edge science - how to view alpha fold predicted models for each of their assigned proteins. Thanks to @PDBeurope and PDBe-KB for making such nice search and online viewer tools #AlphaFold #wlvsbio #notinatextbookyet

Vikas Yadav retweeted
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Tamir Gonen @gonenlab

3 years ago

Crystal clusters diffracted poorly at synchrotrons but yielded 2A by MicroED with excellent refinement statistics. Data collected on. Titan Krios at 300kv, with a falcon4 in counting mode

Vikas Yadav retweeted
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Nature Methods @naturemethods

3 years ago

An iterative approach for improving #AlphaFold protein model quality using experimental density maps, where rebuilt models are used as templates in new AlphaFold predictions, from @TerwillTom and colleagues. OA paper: nature.com/articles/s4159…

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