AMICI @AMICI_toolbox
AMICI is Python/C++/ Matlab interface for SUNDIALS solvers that enables scalable sensitivity analysis for ODE models. https://t.co/nJmBo8f25b github.com/AMICI-dev/AMICI Joined February 2019-
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AMICI 0.23.0 is out with many bug fixes and QOL improvements: github.com/AMICI-dev/AMIC…. Thanks to @dweindl, @fabfrohlich, @PLakrisenko and Paul Jonas Jost for contributions!
AMICI 0.17.0 is out with SBML plugin and AlgebraicRule support and lots of other goodies: github.com/AMICI-dev/AMIC…. Thanks to @dweindl, @fabfrohlich, @dilan_pathirana, @PLakrisenko and Henrik Podéus for contributions!
AMICI 0.16.1 is out bringing many smaller fixes, cosmetic improvements, and documentation updates: github.com/AMICI-dev/AMIC… Thanks to @dweindl, @fabfrohlich and @PLakrisenko for contributions!
AMICI 0.16.0 is out with many improvements to documentation and QoL features github.com/AMICI-dev/AMIC… Thanks to @fabfrohlich and @dweindl for contributions!
AMICI 0.14.0 is out with several bug fixes and new convenience features github.com/AMICI-dev/AMIC…
The application note describing AMICI is now published in Oxford Bioinformatics: doi.org/10.1093/bioinf… Thanks to @fabfrohlich @dweindl @yannik_schaelte @dilan_pathirana @StaporPaul and @JanHasenauer for contributions.
AMICI 0.11.14 is out, adding support for events and various bugfixes: github.com/AMICI-dev/AMIC…… Thanks to @dweindl, @dilan_pathirana, @fabfrohlich, @yannik_schaelte and @StaporPaul for contributions
AMICI 0.11.13 is out, bringing better handling of state reinitializations, improved documentation as well as several bugfixes: github.com/AMICI-dev/AMIC… Includes contributions by @dweindl, @fabfrohlich and Dilan Pathirana.
AMICI 0.11.11 is out, again with better SBML support and bugfixes. Notably we have significantly improved sensitivity computation for models containing Piecewise functions: github.com/AMICI-dev/AMIC… Includes contributions by @StaporPaul, @dweindl, @fabfrohlich and Dilan Pathirana.
AMICI 0.11.9 is out, again with improvements to SBML supporta and small bugfixes: github.com/AMICI-dev/AMIC… Includes contributions by @StaporPaul, @dweindl, @fabfrohlich, Dilan Pathirana, Thomas Ligon and Lorenzo Contento.
AMICI 0.11.8 is out, including improved SBML support, better documentation and various bug fixes: github.com/AMICI-dev/AMIC… Contributions by @dweindl, Dilan Pathirana and @fabfrohlich
Happy to present our computational toolbox @AMICI_toolbox for simulating ODE models today at 7:15 pm UTC in a lightning talk at COMBINE conference (combine2020.sched.com/event/ec4N/lig…). Thanks to the organizers @combine_coord for the opportunity! #COMBINE2020
Just release AMICI 0.11.7 which includes a big documentation overhaul and some efficiency improvements for interdependent expressions: github.com/AMICI-dev/AMIC…
Benjamin Maier @b_d_maier
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Simon Mitchell @SiFTW
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lekshmi @lekshmidhar
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Daniel Weindl @dweindl
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Dilan Pathirana @dilan_pathirana
38 Followers 50 Following
Daniel Weindl @dweindl
233 Followers 491 Following Systems biology, software development, @Peri_NAA (at @ICBmunich). Co-developer of @AMICI_toolbox, PEtab, pypesto... Views are my own.Trends for United States
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