BioSimulations @Bio_Sims
Enabling more comprehensive and more predictive biological models through enhanced reproducibility and reusability biosimulations.org Joined May 2021-
Tweets9
-
Followers36
-
Following36
-
Likes3
🎉 Our #GSoC2022 project "AnnotateMe - Interactive Tool For Annotation of SBML Models" has been funded #SBML #NRNB. Excited to mentor @iamuc12 over the summer summerofcode.withgoogle.com/programs/2022/…
This is really very neat science, illustrating the true power of mathematical modeling in discriminating between various hypotheses: "Integrated computational and in vivo models reveal Key Insights into macrophage behavior during bone healing" journals.plos.org/ploscompbiol/a…
Happy to share our BioSimulators paper! BioSimulators is a registry of standardized tools to make biological modeling and simulations more reproducible academic.oup.com/nar/advance-ar…
Glad to see this work out! Biosimulators is an online registry of free, standardized simulation tools See here biosimulators.org
Glad to see this work out! Biosimulators is an online registry of free, standardized simulation tools See here biosimulators.org
The biosimulators publication is out. Great to be part of the initiative lead by Bilal Shaikh and Jonathan Karr. doi.org/10.1093/nar/gk…
Take a look at our blog post highlighting our use of @hdf5 and HSDS to build #BioSimulations BioSimulations: a platform for sharing and reusing biological simulations hdfgroup.org/2022/02/biosim… via @hdf5
We are very pleased to announce our latest publication: Practical Resources for Enhancing the Reproducibility of Mechanistic Modeling in Systems Biology reproduciblebiomodels.org/practical-reso… #systemsbiology #mechanisticmodeling #repeatability #reproducibility #reusability #ScienceTwitter
RunBioSimulations: an extensible web application that simulates a wide range of computational modeling frameworks, algorithms, and formats academic.oup.com/nar/advance-ar…

Deep Origin @DeepOriginBio
250 Followers 129 Following It shouldn't take 10 years to deliver one drug. Time to un#uck life sciences and put the scientist first. Let's untangle the complexity of life.
Rodrigo Colpo 🦠�... @rcolpo
341 Followers 1K Following Genome-Scale Metabolic Modelling | Microbiome simulations | PhD candidate #SysBio #SystemsBiology
Mechanistic Modeling ... @CompCellBio
398 Followers 60 Following The home for https://t.co/6zS4kufM2t and https://t.co/RN2ZAXiNA3 @UCONNHEALTH. Supporting the cell biology computational modeling community.
Vincent Noël (@vince... @vincentnoel72
260 Followers 832 Following Research scientist in @SysBioCurie team at @institut_curie. Modeling and simulating biological systems with multiscale frameworks. #MaBoSS,#PhysiBoSS developer
jrbanga @julio_r_banga
645 Followers 1K Following Researcher at CSIC (Spanish National Research Council). Computational systems biology. Find me at @julio-r-banga.bsky.social
Julio César @jcp_sansalvador
49 Followers 202 Following Applying maths and computing for the understanding of biological and physical phenomena 💻 🤔🪐🧬 🦠😷
Nima Dehghani @neurovium
3K Followers 5K Following #{I COMPUTE, THEREFORE I AM}# Biological Computation,Neurophyics & CompNeuro, Complex Systems. neuro https://t.co/L44S1cBvCB
PatFTerry @PatFTerry
394 Followers 5K Following Gifted Life. Working to alleviate suffering in the world. AI/ML/DL. Computation. Simulation. Genomics. Proteomics. Cancer. Digital Twin. (Views = my own)
Kien Phan Trung @KienTPhan
3 Followers 108 Following
Song Feng 馮松 @SongZhimuFeng
252 Followers 848 Following Systems Biology | Evolution | AI for Science | Multiscale Modeling https://t.co/qAv2qm1SVR
Frank Fusco @frankafusco
2K Followers 2K Following CEO @silicon_society (shadow pros at work 💼) | Built Labs @lambdaschool | Co-built @ecosoapbank ♻️
Criseida Zamora @CriseidaZC
21 Followers 160 Following
takemu @takemu2010
5 Followers 72 Following
Samuel Chagas @schagas98
182 Followers 428 Following Biotechnology - @unila 🌎 | Computational Biocatalysis Intern - LNBR @cnpem | he/him all views are my own
Karthik Raman @karthikraman
1K Followers 690 Following Professor @iitmadras @DSAI_IITM @WSAI_IITM @iitmbt @IBSE_IITM @RBC_DSAI_IITM. Tweeting in personal capacity (of course!) on science, technology & संस्कृतम्!
Ryo J Nakatani @RyoJNakatani
77 Followers 168 Following PhD student at Okinawa Institute of Science and Technology(@OISTedu). Tweets are of my own. En/Ja
Waqar Hussain Shah (P... @waqarhusinshah
157 Followers 2K Following
L @SeanSonGodSunuS
59 Followers 360 Following #DawnSong ÷HerBrthdayMatchesThisYear÷ 112290=2022 2490=204 690=24 15=6 6=6 ALOVE THIS IS, #GodShesuSonGodSanGofLoveDawn #GSSGSGLD=4=#WeBeye_4=#DAWN=6.
Neha Khetan @NehaKhetan4
144 Followers 587 Following Quant-CompBiologist| Postdoc @Weinberger_Lab @GladstoneInst |PhD @AthaleLab @IISERPune| BE @rvce_official | Interested in mechanisms-EmergenceEvolutionEngineer
Eran Agmon @multiscalebio
147 Followers 223 Following asst professor at UConn; multiscale simulations of cells; questing for the essence of life and its boundaries
The HDF Group @hdf5
748 Followers 155 Following HDF® technologies and supporting services that make possible the management of large, complex data collections. Support Requests: https://t.co/fQ1Iwj67s0
Ben G Small @bgsmall
167 Followers 1K Following PK/PD Scientist. Research interests centred around Systems Biology, Systems Pharmacology and Pharmacometrics. INTJ/P.
Hiroaki Imoto @hiroaki_imoto
117 Followers 235 Following Postdoctoral Researcher @sysbioire @ucddublin 🇮🇪
Bioinformatics and Da... @DraegerLab
714 Followers 417 Following Halle’s bioinformatics and data analyticsresearch group @UniHalle | @DZIF_
Ion I. Moraru @imbalrog
149 Followers 230 Following
Haritz Irizar Agirre @HaritzIrizar
50 Followers 173 Following
Randy Heiland @rheiland
794 Followers 2K Following Computer science, mathematics, modeling, scientific visualization, dynamical systems, and education. Research Associate in @MathCancer lab @IULuddy.
Paul Lang @PF_Lang
131 Followers 166 Following Systems biologist using @JuliaLanguage to scale up #sysbio models.
Reproducible Biomodel... @reprobiomodels
479 Followers 359 Following Making biomedical models understandable, reproducible, reusable, and composable
Bilal Shaikh @bshaikh42
61 Followers 461 Following
Daniel Weindl @dweindl
233 Followers 491 Following Systems biology, software development, @Peri_NAA (at @ICBmunich). Co-developer of @AMICI_toolbox, PEtab, pypesto... Views are my own.
Paul Macklin @MathCancer
6K Followers 4K Following Associate Dean for Undergraduate Education @IUBloomington @IUluddy • multicellular systems & cancer with @PhysiCell • #OpenSource • astrophotography
David Nickerson @andreshouse
281 Followers 327 Following
Victor Savkin @victorsavkin
20K Followers 559 Following 🇨🇦 Creator of Nx, Co-founder and CTO of @NxDevTools ❤️ JS, build tools, scale
Phillip Compeau @PhillipCompeau
4K Followers 2K Following (Teaching) prof @CMUCompBio. Open ed founder: @Programming4Lvr, Rosalind, Bioinformatics Algorithms, Biological Modeling. It's a lotta goofies with a check
Aurélie Carlier @ACarlier_PhD
2K Followers 762 Following Associate Professor - mathematical biology - regenerative medicine - FEM co-founder - Inspiring50 Belgium 2022
jrbanga @julio_r_banga
645 Followers 1K Following Researcher at CSIC (Spanish National Research Council). Computational systems biology. Find me at @julio-r-banga.bsky.social
SysMod @cosi_sysmod
601 Followers 201 Following The Computational Modeling of Biological Systems (SysMod) Community of Special Interest (COSI) of the International Society for Computational Biology (ISCB)
Natalie Stanley @natstann
1K Followers 2K Following ∑ ∫: Assistant Professor {@unccs,@CompMedUNC}. // Single-Cell Bioinformatics. interested in how the immune system adapts in aging.Lab: @comp_cy
SciML Scientific Mach... @SciML_Org
3K Followers 3 Following Open source software for scientific machine learning (#sciml) in #julialang #python #rstats.
The COBRA Toolbox @TheCOBRAToolbox
415 Followers 159 Following A comprehensive, open-source, community-developed code-base for constraint-based modelling written in #MATLAB. From the community for the community...
COMBINE @combine_coord
309 Followers 1 Following
Deep Origin @DeepOriginBio
250 Followers 129 Following It shouldn't take 10 years to deliver one drug. Time to un#uck life sciences and put the scientist first. Let's untangle the complexity of life.
Dr. Stacey Finley (US... @USCSysBio_Lab
3K Followers 1K Following Developing mathematical models to better understand biochemical networks and identify drug therapies. Directed by Dr. Stacey Finley, Professor of BME @USC
Karthik Raman @karthikraman
1K Followers 690 Following Professor @iitmadras @DSAI_IITM @WSAI_IITM @iitmbt @IBSE_IITM @RBC_DSAI_IITM. Tweeting in personal capacity (of course!) on science, technology & संस्कृतम्!
Eran Agmon @multiscalebio
147 Followers 223 Following asst professor at UConn; multiscale simulations of cells; questing for the essence of life and its boundaries
The HDF Group @hdf5
748 Followers 155 Following HDF® technologies and supporting services that make possible the management of large, complex data collections. Support Requests: https://t.co/fQ1Iwj67s0
Paul Lang @PF_Lang
131 Followers 166 Following Systems biologist using @JuliaLanguage to scale up #sysbio models.
Ion I. Moraru @imbalrog
149 Followers 230 Following
Bioinformatics and Da... @DraegerLab
714 Followers 417 Following Halle’s bioinformatics and data analyticsresearch group @UniHalle | @DZIF_
UC San Diego Systems ... @ucsd_sbrg
3K Followers 164 Following The Systems Biology Research Group at the University of California, San Diego, led by Dr. Bernhard Palsson
CAPRI docking @CAPRIdock
319 Followers 27 Following The community-wide CAPRI protein docking experiment
LOD2 Project @lod2project
1K Followers 87 Following
DaPaaS Project @dapaasproject
495 Followers 606 Following An @Ontotext @Swirrl @Sintef @sirmamobile @SemanticSaltlux @ODIHQ platform (https://t.co/OR2UP7y2rb) for #ETL, #OpenData (& #LOD) transformation and hosting.
Randy Heiland @rheiland
794 Followers 2K Following Computer science, mathematics, modeling, scientific visualization, dynamical systems, and education. Research Associate in @MathCancer lab @IULuddy.
Luca Gerosa @gerosa_luca
584 Followers 607 Following Cancer Systems Pharmacology. Principal Scientist @Genentech. Prev: Postdoc Sorger lab @harvardmed, PhD Sauer lab @ETH Zurich
AMICI @AMICI_toolbox
22 Followers 2 Following AMICI is Python/C++/ Matlab interface for SUNDIALS solvers that enables scalable sensitivity analysis for ODE models. https://t.co/nJmBo8f25b
Daniel Weindl @dweindl
233 Followers 491 Following Systems biology, software development, @Peri_NAA (at @ICBmunich). Co-developer of @AMICI_toolbox, PEtab, pypesto... Views are my own.
MSM Viral Pandemic Mo... @MsmViral
84 Followers 28 Following COVID-19 has provided an example of the importance of computational modeling. We will develop a strategy for a multi-scale modeling effort for viral pandemics.
PhysiCell @PhysiCell
609 Followers 114 Following Official PhysiCell Twitter account Primarily maintained by @MathCancer and @rheiland
Paul Macklin @MathCancer
6K Followers 4K Following Associate Dean for Undergraduate Education @IUBloomington @IUluddy • multicellular systems & cancer with @PhysiCell • #OpenSource • astrophotography
David Nickerson @andreshouse
281 Followers 327 Following
Mechanistic Modeling ... @CompCellBio
398 Followers 60 Following The home for https://t.co/6zS4kufM2t and https://t.co/RN2ZAXiNA3 @UCONNHEALTH. Supporting the cell biology computational modeling community.
Bilal Shaikh @bshaikh42
61 Followers 461 Following