The Anantharaman Lab @AnantharamanLab
Anantharaman Microbiome Lab @UWMadison. Microbial/Viral ecology, omics, biogeochemistry with a focus on sulfur metabolism in environmental and human microbiomes anantharamanlab.wisc.edu Madison, WI Joined September 2017-
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Congrats 🎉 to our student @patriciatran_ for winning an #ISME18 best poster award! Woot woot. @quendi @UWBact @AnantharamanLab
Excited to showcase our new @AnantharamanLab paper co-led by @ZhichaoZhou_CHN and Emily St. John focused on the microbial ecology of globally distributed deep sea hydrothermal vent chimneys. Super collaboration with @alr_thermophile. biorxiv.org/content/10.110….
Honored to receive the ASM Early Career Award for Environmental Research. And more so, Super honored to be receiving this with @Firestone_Lab. @UWBact @AnantharamanLab
Proud advisor moment! Sad to see my first PhD student @KrisKieft leave. But onto a fantastic future career ahead! Congratulations Kris on a fabulous PhD. The @AnantharamanLab was truly honored to have you be a part of our family and will miss you.
Interested in viromics or viruses in microbiomes? Our new manuscript describing the virus binner vRhyme is out! Led by @AnantharamanLab PhD student @KrisKieft in collaboration with @lindskalan @SalamMicrobes @TeemoDoScience @UWBact @UWMadisonMDTP academic.oup.com/nar/advance-ar…
New @AnantharamanLab paper describing sulfur metabolism in #colorectalcancer #microbiome is out! Led by MD-PhD student Elise Cowley through a fantastic collaboration w/ Patricia Wolf, Rex Gaskins, and @Ridlon_Lab. @UWMadisonMDTP @UWBact microbiomejournal.biomedcentral.com/articles/10.11…
Our new paper describing PropagAtE - our software for prophage activity estimation is out! Use this to study the ecology of prophages in genomes/metagenomes in diverse ecosystems and microbiomes. @KrisKieft @AnantharamanLab @UWMadisonMDTP @UWBact journals.asm.org/doi/10.1128/ms…
METABOLIC is a novel scalable software by @AnantharamanLab which allows for characterization of microbial metabolic predictions, exchanges & interactions, individual contributions to biogeochemical cycling & community-scale functional network construction microbiomejournal.biomedcentral.com/articles/10.11…
Super excited to pass along this awesome work! @patriciatran_ @AnantharamanLab Do you like microbial genomes and bio geochemistry??? Look no further microbiomejournal.biomedcentral.com/articles/10.11…
Our paper describing the software METABOLIC is out. We've got some great analyses and visualizations for microbial metabolism, pathways, metabolic interactions, and biogeochemical cycles from microbial genomes and metagenomes. @AnantharamanLab @UWBact microbiomejournal.biomedcentral.com/articles/10.11…
If you're interested in viral genomics, this new review by #MDTP student @KrisKieft is for you! @UWBact @AnantharamanLab
If you're interested in viral genomics, this new review by #MDTP student @KrisKieft is for you! @UWBact @AnantharamanLab
Our new review on the state of viral/phage genomics led by super-talented Ph.D student @KrisKieft is now out! We discuss conventions, biases, ideologies, and the future of virus genomics. @AnantharamanLab @UWBact sciencedirect.com/science/articl…
Want to bin virus genomes from metagenomes? Then #MDTP student @KrisKieft has the right tool for you! Congrats to Kris, current student @salamzader, and trainers @lindskalan @KarthikGeomicro on their preprint! biorxiv.org/content/10.110… @UWBact @AnantharamanLab @madmicrobiome
Want to bin virus genomes from metagenomes? Then #MDTP student @KrisKieft has the right tool for you! Congrats to Kris, current student @salamzader, and trainers @lindskalan @KarthikGeomicro on their preprint! biorxiv.org/content/10.110… @UWBact @AnantharamanLab @madmicrobiome
Why is there a Pseudomonas when there is no Realmonas?
Excited to share ‘vRhyme’, a new bioinformatics tool for binning viruses and phages into viral metagenome-assembled genomes (vMAGs)! @AnantharamanLab @UWMadisonMDTP @UWBact doi.org/10.1101/2021.1…
Our viral genome binner "vRhyme" is available on github. All feedback/comments welcome. @KrisKieft github.com/AnantharamanLa…
Interested in viruses/phage and metagenomics? Check out our new manuscript led by @KrisKieft describing vRhyme, a software to reconstruct viral genomes from metagenomes! @AnantharamanLab @UWMadisonMDTP @UWBact biorxiv.org/content/10.110…
The Anantharaman lab is looking for a postdoc to work on developing and applying approaches to study the diversity, ecology, and/or evolution of viruses/phage in the environment. Please RT and spread the word. @UWBact @UWMadisonCALS @AnantharamanLab anantharamanlab.wisc.edu/2021/12/09/pos…
#MDTP Student Highlight: Kris Kieft @KrisKieft is a 5th year student in the @AnantharamanLab who uses metagenomic sequencing data to study viruses in nature and how they impact microbial metabolism. #UWMadison #LoveVirology
Awesome article in our student newspaper @BadgerHerald on our research on Sulfur Cycling in freshwater lakes spearheaded by Ph.D student @patriciatran_ and her mentee, undergraduate researcher Samantha Bachand. badgerherald.com/news/2021/11/1… @AnantharamanLab @UWBact
Karthik Anantharaman @KarthikGeomicro
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AMI_SMI @AMI_SMIJournal
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Gareth (Gary) Trubl �... @gtrubl
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Sean Jungbluth @seanjungbluth
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