Biopython Project @Biopython

Open-source bioinformatics libraries in Python biopython.org Worldwide Joined March 2009

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Biopython Project @Biopython

3 years ago

Way overdue, but Biopython 1.80 is out pypi.org/project/biopyt… - expect formal announcement later mailman.open-bio.org/pipermail/biop… - conda packages soon too! Thank you to all the contributors /Peter

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Peter Cock @pjacock

3 years ago

Just ordered a pair of free 2FA keys courtesy Google Open Source Security Team for use with PyPI where a few of my projects are now deemed “critical” (plus @Biopython) pypi.org/security-key-g…

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Martin Larralde @althonos

3 years ago

55 lines of #Python code to build a Multiple Sequence Alignment viewer for the terminal with the #Rich library (from @textualizeio) #bioinformatics

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Yu Kitago @uKitago

4 years ago

#Biopython can handle #snapgene file! Using this feature, it's possible to easily convert many snapgene files into #genbank format files!!

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Biopython Project @Biopython

5 years ago

NumPy has dropped Python 3.6 support, Biopython plans to soon. Any objections? github.com/biopython/biop… mailman.open-bio.org/pipermail/biop…

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SonarCloud @SonarCloud

5 years ago

Our #Python bug hunt in popular, well-maintained projects (@TensorFlow, numpy, salt, sentry and @Biopython) turned up interesting stuff like undefined var reference, unreachable code, and more. blog.sonarsource.com/sonarcloud-fin…

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Vini Salazar @vinisalazar_

5 years ago

Very happy to have my first contribution to @Biopython merged today! Hope to contribute more in the future. Shoutout to @pjacock for the patience in reviewing my PR. #opensource #python #bioinformatics

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Biopython Project @Biopython

5 years ago

Biopython 1.78 has been released open-bio.org/2020/09/04/bio… - please note the Bio.Alphabet removal biopython.org/wiki/Alphabet

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Peter Cock @pjacock

5 years ago

No more Bio.Alphabet in Biopython 1.78, we’re collecting some examples of changes needed here:github.com/biopython/biop… Are we missing your use case?

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Biopython Project @Biopython

5 years ago

Read or listen to the “Biopython Project Update 2020” 5 minute talk given at #BCC2020 #BOSC2020 f1000research.com/slides/9-790 bcc2020.sched.com/event/coLV/bio…

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João Vitor Cavalcante @jvcavv

5 years ago

Great work by all the volunteers, I'm glad I was able to contribute, it was fun and I ended up learning a lot. 🎉🎉

Biopython Project @Biopython

5 years ago

Great work by all the volunteers, I'm glad I was able to contribute, it was fun and I ended up learning a lot. 🎉🎉

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Biopython Project @Biopython

5 years ago

One outcome of the #BCC2020 CoFest - we now enforce the black #Python formatting style for all of Biopython 🎊

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Biopython Project @Biopython

5 years ago

We have several people already active on Biopython projects at the #BCC2020 CoFest - with pull requests merged and issues closed. Thank you - and please join us! bcc2020.github.io/cofest/

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Biopython Project @Biopython

5 years ago

Biopython 1.77 is belatedly up on conda-forge anaconda.org/conda-forge/bi… - the glitch holding up the package update turned out to be frustratingly simple in the end. Enjoy! /Peter

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Gael Varoquaux 🦋 @GaelVaroquaux

5 years ago

Technical discussions are hard; a few tips gael-varoquaux.info/programming/te… Some thoughts and advice on better communications in technical projects, in particular open source

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Biopython Project @Biopython

5 years ago

Biopython 1.77 is now out open-bio.org/2020/05/25/bio… - available from PyPI for “pip install --upgrade biopython”

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Chris Rands @c_rands

6 years ago

New #Jupyter Notebook tutorial for @Biopython - illustrates some simple #bioinformatics analysis to characterise small sequences like a #coronavirus genome github.com/chris-rands/bi…