Janna Fierst @Fierst_Lab
Calamity is a great teacher Miami, FL Joined October 2015-
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The latest hifiasm can directly assemble standard @nanopore simplex R10 reads, without HERRO correction or other preprocessing, to phased contigs of contiguity comparable to HiFi assembly. Like before, you can further add ultra-long, Hi-C or trio data for better assembly.
The latest hifiasm can directly assemble standard @nanopore simplex R10 reads, without HERRO correction or other preprocessing, to phased contigs of contiguity comparable to HiFi assembly. Like before, you can further add ultra-long, Hi-C or trio data for better assembly.
Morning reading! Protein degradation as a molecular mechanism of species barrier.
Morning reading! Protein degradation as a molecular mechanism of species barrier.
tidyplots Time to say goodbye to ggplot2?🫡 "a significant reduction of code complexity" vs ggplot2 cran.r-project.org/web/packages/t… @JanBroderEngler bioRxiv 2024 biorxiv.org/content/10.110…
Engineering structural variants to interrogate genome function. #StructuralVariants #GenomeEngineering #GenomeFunction @NatureGenet nature.com/articles/s4158…
I've started making short videos where I walk through the Jupyter notebooks for Think Python. Not sure yet what I'll do with them, maybe an online class. For now, here are the first three: youtube.com/playlist?list=…
! Rapid chromosome evolution and acquisition of thermosensitive stochastic sex determination in nematode androdioecious hermaphrodites nature.com/articles/s4146…
Happy to share our review on repetitive DNAs and their impact on insect genomes, authored by Octavio Palacios-Gimenez @OMPalacios7 and me. Current Oppinion in Insect Science authors.elsevier.com/sd/article/S22…
Excited to share our unexpected finding: piRNA pathway designed to protect the genome from invading nucleic acids created a population of selfish small RNAs that have perpetuated themselves for the past hundred million years of mammalian evolution. biorxiv.org/content/10.110…
Good things that happened this week: Postdoc O1 visa! 🥳
This is crazy. Why worms love argonautes so much!?
I started gathering a list for REUs/Summer research opportunities for undergraduate students in Ecology/Conservation/Evolutionary Biology. Feel share to share with any undergraduate students who may be interested in participating in *PAID* research. docs.google.com/spreadsheets/d…
I'm looking for #Postdocs ! 🧑🔬🔍 I'm a highly motivated researcher with experience in R programming, network analysis, and multivariate statistics. My focus is on the evolution of ecosystems and biodiversity over deep time. Any retweets or shares are greatly appreciated! 🙏
I am excited to announce the third edition of Think Stats, to be published by O'Reilly Media in 2025. As always, I'm posting the free version as a work in progress. You can read it at allendowney.com/blog/2024/10/2…
Here's another one from the #phytools blog archive... a phylogenetic "lollipop plot" in #Rstats: blog.phytools.org/2024/02/a-phyl….

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