GNPS - UC San Diego @GNPS_UCSD
Online mass spec analysis platform that enables global visualization and interpretation based on crowd sourcing. #molecularnetworking #massspec gnps.ucsd.edu San Diego, CA Joined May 2014-
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Next stop on our Workshop Europe tour: Zurich hosted by @_nicola_zamboni. Corinna and I look forward to discussions and meeting our colleagues from the @swiss_society at @ETH_en. We will present work by @mzmine_project, @GNPS_UCSD, @HeuSteffen, @mingxunwang, and others.
Specialized metabolic convergence in the gut microbiomes of cycad-feeding insects tolerant to β-methylamino-L-alanine (BMAA) biorxiv.org/content/10.110…
This is great opportunity to apply MS-based metabolomics for the discovery of allelopathic metabolites using #MolecularNetworking and #ComputationalMS. Especially those of you familiar with @GNPS_UCSD @mzmine_project #SIRIUS @boeckerlab. An excellent lab ! It strongly recommend !
This is great opportunity to apply MS-based metabolomics for the discovery of allelopathic metabolites using #MolecularNetworking and #ComputationalMS. Especially those of you familiar with @GNPS_UCSD @mzmine_project #SIRIUS @boeckerlab. An excellent lab ! It strongly recommend !
Our team is recruiting a post-doc in analytical chemistry for 2 years on the moss Physcomitrium patens at @ijpb_fr in frame of a collaborative project about #strigolactones @ijpb_fr @icsn and US2B @NantesUniv. Contact [email protected] Please RT
The combination with #feature based #molecular #networking @GNPS_UCSD #FBMN allowed us to probe #berry derived #urine metabolites in the #metabolomics #profiles! 😎 Further, we could speculate on their Phase I or II origin due to available #time series and #quantitative info!
Very happy to share with you our collaborative work with @Publi_MNHN @Marine_Drugs that melted together #computationalmetabolomicstools such as #MASST @GNPS_UCSD shorturl.at/tzW78
Great to see more metabolomics data being shared thx to many impressive efforts @MetaboLights @MetabolomicsWB @GNPS_UCSD Hope this article can be a starting pt of discussion for @NatureCellBio readers to facilitate data re-use. Nice work @EthanStancliff2! nature.com/articles/s4155…
The preprint is out! "UmetaFlow: An untargeted metabolomics workflow for HT data processing& analysis". A huge thank you to the @OpenMSTeam, the @NPGMgroup, and especially to A. Walter, O. Alka, J. Pfeuffer, @Sachsenberg & @OKohlbacher! 🙏🥳 So grateful. doi.org/10.26434/chemr…
spectrum_utils v0.4.0 is out now! spectrum-utils.readthedocs.io New features make it easier than ever to work with mass spectrometry data in Python: - Load spectra from their USI. - Annotate (modified) peptides using ProForma. - Support for different ion types, neutral losses, etc.
Join @AneBauermeister @amcaraballor Tiago Leão to learn how to GC/MS Molecular Networking in Portuguese! youtube.com/watch?v=WLk9kL… youtube.com/watch?v=gVJPwt…
Out now! 🥳 We synthesized silicone (PDMS) foams to sample #Air gas&particles + performed #NTA by GC & LC-HRMS Orbitrap to get the full picture! Proud and excited to share our work @EnvSciTech Letters @AcademicTox @Benilde_B @HongyuXie9 @GNPS_UCSD @pubchem(Lite) for #Exposomics
The Dorrestein lab has the pleasure to annunciate a new tool that we are developing, plantMASST 🌱🍍🍎🍃 Users will be able to search for MS/MS spectra against a database of Plant MS/MS files, and map the results into a phylogenetic/taxonomic tree! 1/3
We are very excited to welcome @mingxunwang, a new @UCR_CSE faculty. His lab is actively recruiting undergraduates and graduate students so if you're interested in bioinformatics and understanding the chemical space around us, check out the opportunities: cs.ucr.edu/~mingxunw/oppo…
Lars highlights how SynCom influences SM levels produced by Pseudomonas protegens = cool chemical data (LC-MS) combined with @GNPS_UCSD analysis and beautiful MS imaging of duo colonies demonstrate multispecies interaction (MSI funded by @novonordiskfond) #LipopeptideLiege
@yaneslab @jjjvanderhooft depends on how you look at it. In sheer data probably yes. But the groundwork (like MS technologies, @GNPS_UCSD etc) usually takes most work and energy. Think of the sequencing technologies.
Our department is hiring! Broadly look for anyone interested in using AI/ML for chem/biochem applications. I know there are #TeamMassSpec people perfect for this posting, so please retweet!
The team just released MZmine 3.2.3. Crucial performance updates came in 3.2 and now a new convenience feature in 3.2.3. Definitely time to update to get the most out of you MS analysis. Thanks to all project contributors. github.com/mzmine/mzmine3…
@mingxunwang @GNPS_UCSD @mzmine_project @OpenMSTeam Anyone interested in using MassQL in UniDec can find it in the experimental tab of the main menu. It’s a great way to search for specific features in your complex peak list!
This is one of those papers that will transform how metabolomics data patterns at the spectral level within one project or repository can be analyzed. I anticipate this will become one of the most important tools we have to mine mass spec data. So proud of the team. So excited!
This is one of those papers that will transform how metabolomics data patterns at the spectral level within one project or repository can be analyzed. I anticipate this will become one of the most important tools we have to mine mass spec data. So proud of the team. So excited!
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2K Followers 14 Following mzmine is an open-source software for mass spectrometry data processing and visualization developed by mzio.
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ms2lda @ms2lda
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535 Followers 477 Following SMART is a user-friendly, AI-based dereplication and analysis tool that uses 2D NMR data to rapidly associate newly isolated NPs with their known analogues.
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596 Followers 436 Following Teachers and Learners @GeorgiaTech #ChemicalMicrobiology #CoralReefBiome #Burkholderia #MassSpec #SpatialMetabolomics #MicrobialInfectiousDiseases #Genetics
EMP @earthmicrobiome
1K Followers 10 Following The Earth Microbiome Project (EMP) is a crowd-sourced, open-access effort to characterize the microbial communities of Earth.
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Metabolomics Workbenc... @MetabolomicsWB
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MetabolomicsUCDavis @WCMC_UCDavis
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