The Ott Lab @TheOttLab
Melanie Ott's lab @GladstoneInst studying host-viral pathogen interactions. Tweets from lab members. Retweets are not endorsements. ottlab.gladstone.org San Francisco, CA Joined January 2018-
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.@TheOttLab is #hiring a Research Associate to contribute #bioengineering and molecular biology skills for ongoing #virology research. Learn more: bit.ly/3SqDxhc #ScienceJobs #ScienceCareers #Jobs
Explore emerging #HIVResearch #HIVCoinfection research with field leaders @KeystoneSymp HIV and (Re)Emerging Viruses: Aligning Lessons Across Pandemics, this April in Hannover! keysym.us/KSHIVPath24 #KSHIVPath24
Looking forward to a peaceful night! Finally submitted my R25 as a PI for #PUMAS. An amazing program that I’m honored to lead, with Melanie Ott @TheOttLab PUMAS is an education internship program supporting URM students from community colleges! @GladstoneInst #internship #URM
👩🔬 @katelyn_luo13 mastered the ins and outs of cloning huge plasmids 🧬 and got some exciting data this summer! She was part of @GladstoneInst PUMAS program and worked with Fran in the lab!👏
HOPE has an incredible community team and Tom Villa has gone above and beyond for HIV research! Check out the @SauDiversidade podcast ‘HIV From Chaos To Cure’ on Spotify! #hiv #aids #hivcure #uequalsu #hivadvocate open.spotify.com/episode/4D2Yeg…
Our favorite lab jokester🤡, @mirmkhalid, was featured @GladstoneInst!👏👏 👨🔬Learn more about his unique hobbies and journey in science below! 👇 gladstone.org/news/meet-glad…
👩🔬Ursula recently published her collaborative work on the ensemble-based conformational propensities of HIV-1 TAR RNA binding to Tat protein. The work revealed TAR, in its biologically active state, is energetically unfavorable!🧬 nature.com/articles/s4158…
🚨Check out our latest publication with Ik-Jung Kim from @EricVerdin and @BuckInstitute. 🥼Along with Yong-ho lee, @mirmkhalid, @irenechen_png, and Yini Zhang we report that SARS-CoV-2 ORF8 limits spike expression by retaining Spike in the ER. 👉doi.org/10.1016/j.jbc.…
Kris and @mirmkhalid's work was featured! 👏Look at these pretty images👇
Kris and @mirmkhalid's work was featured! 👏Look at these pretty images👇
Congratulations @irenechen_png ! Dr. Irene successfully defended her thesis + attended commencement on the same day! Now that's grad student efficiency!🎉🔬 @GladstoneInst @Gladstone_GO Check out some of her work: pubmed.ncbi.nlm.nih.gov/35839775/ pubmed.ncbi.nlm.nih.gov/35584773/
Ott lab represent!! @GladstoneInst soccer team is playing in our second season! Come out and cheer us on!
🚨New publication alert!🚨 Check out the 🧵from @ttaha801 about the role of NSP6 in BA.1 attenuation! This was a group effort involving @irenechen_png @hayashi_jen and Takako to get this across the finish line! 👩🔬👨🔬 @QBI_UCSF @GladstoneInst @UCSF
🚨New publication alert!🚨 Check out the 🧵from @ttaha801 about the role of NSP6 in BA.1 attenuation! This was a group effort involving @irenechen_png @hayashi_jen and Takako to get this across the finish line! 👩🔬👨🔬 @QBI_UCSF @GladstoneInst @UCSF
🚨New preprint alert! Check out our story on the role of macrodomain from NSP3 in viral replication. 🥼 @ttaha801 @rahulsurya85 @irenechen_png @GladstoneInst @QBI_UCSF @UCSF @fraser_lab @Ashworth_SF
🚨New preprint alert! Check out our story on the role of macrodomain from NSP3 in viral replication. 🥼 @ttaha801 @rahulsurya85 @irenechen_png @GladstoneInst @QBI_UCSF @UCSF @fraser_lab @Ashworth_SF
Check out Raif's vlog encouraging awareness of @HOPEforHIVCure's "block, lock, and excise" approach! 👨🔬👩🔬 Scientists in our lab and beyond are hard at work discovering new antivirals and technology to remove the virus from infected cells!🧪 👉youtube.com/watch?v=105XfK…
Check out our newest paper on HIV transcriptional regulation!👇 cell.com/cell-reports/f… Daniela found SYMD5 associates with Tat/TAR and activates HIV transcription by binding to its promoter. SYMD5 is a possible target for latency-promoting therapy!🥳@GladstoneInst @CellReports
Happy International Women's Day! 👩🔬The amazing women in our lab are making important discoveries in virus-host biology! 👏👏 @hayashi_jen @LudivineGrzelak @irenechen_png @rae_padget + Steph, Maria, Ursula, Chia-Lin, Daniela, Gabby, Veronica, Alia! 😍 @GladstoneInst
Harmit S. Malik @HarmitMalik
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453K Followers 8K Following Virologist. PI @VIDOInterVac. Adj Prof @USask BMI. P2 @covarr_net. Jeopardy! loser. Famed for my obnoxious turns of phrase. 🇺🇸in🇨🇦. she/herMammoth Biosciences @mammothbiosci
6K Followers 2K Following Improving lives by reading and writing the code of life.Sheila Chari @SheilaChari
1K Followers 299 Following feminist, scientist, daughter of immigrants, eats vegetables for breakfast, Editor in Chief @CellStemCell (opinions are my own) she/her.@TheOttLab is #hiring a Research Associate to contribute #bioengineering and molecular biology skills for ongoing #virology research. Learn more: bit.ly/3SqDxhc #ScienceJobs #ScienceCareers #Jobs
Looking forward to a peaceful night! Finally submitted my R25 as a PI for #PUMAS. An amazing program that I’m honored to lead, with Melanie Ott @TheOttLab PUMAS is an education internship program supporting URM students from community colleges! @GladstoneInst #internship #URM
Mir Khalid, scientist in the Ott Lab, describes how his passion for science started at a young age.
We partnered at the @BuckInstitute for Research on Aging with the team at @juvlabs to develop a premium ketone ester. Our team is thrilled about the new breakthrough taste! Cognitive Switch is now available on Amazon (see link below) a.co/d/4lw10rQ
HOPE has an incredible community team and Tom Villa has gone above and beyond for HIV research! Check out the @SauDiversidade podcast ‘HIV From Chaos To Cure’ on Spotify! #hiv #aids #hivcure #uequalsu #hivadvocate open.spotify.com/episode/4D2Yeg…
I am also a meme-lord! 😀😀
Our favorite lab jokester🤡, @mirmkhalid, was featured @GladstoneInst!👏👏 👨🔬Learn more about his unique hobbies and journey in science below! 👇 gladstone.org/news/meet-glad…
How do you know that the senior design project deadline is tomorrow? When all your students are in the lab cramming in one more experiment! 🥼🥽⚗️🧫🧪🔬😎
🚨 NEW🚨 "Transmission, infectivity, and neutralization of a spike L452R SARS-CoV-2 variant" @TheOttLab @mirmkhalid @UCSF bit.ly/3ndi4a0
We designed and optimized pGLUE: a Golden Gate-based system to assemble viral genomes. We can reliably assemble infectious clones and replicons within 1 week. This enables mechanistic analysis of SARS-CoV-2 phenotypes and characterization of regionally emerging variants rapidly.
Using pGLUE, we generated naturally occurring Deltacron variants and demonstrated that BA.1 mutations in ORF1ab and Spike are responsible for the low replicative capacity of BA.1 in cell and animal models of infection.
We systematically investigated which mutation is responsible by generating mutant replicons where BA.1 mutations were reverted to Delta for each viral protein. We found that BA.1 NSP6 is responsible for almost all of the deficit in BA.1 viral RNA replication.
NSP6 plays a critical role in zippering ER membranes and channeling lipids towards replication complexes (nature.com/articles/s4158…).
We found that BA.1 NSP6 has reduced lipid droplet consumption compared to WT NSP6 and this likely plays a role in its observed attenuated RNA replication phenotype. We're currently conducting detailed follow up analysis on these observations.
This work would not have been possible without the help of many scientists in @TheOttLab and @doudna_lab, especially @irenechen_png and @hayashi_jen! Thank you!!! 🙏 Also huge shout out for rotation students @keithvvvv and @gabbykimmerly for significant contributions!
🥳🥳🥳🥳 Our paper systematically characterizing #SARSCoV2 Omicron BA.1 attenuation is now out in @NatureComms!!! rdcu.be/darQ9 A brief 🧵.
March 14 @stemcellreports. Learned a lot, analyzing human airway #organoids & #COVID. cell.com/stem-cell-repo…. THX @TheOttLab @alexis_combes @GabiFragiadakis @lisiena_lissi @sigallab @niaid @TheMarkFdn. Now back to tumor organoids & immune cells. Postdoc positions.
Who did I find in San Francisco today? My previous PI, PhD supervisor from @Virus_Immunity, giving a very nice presentation for the new partnership between @QBI_UCSF and @institutpasteur! Happy to see you here @OlivierSchwartz !