David Barnett @_david_barnett_
PhD student | microbiome research (human, gut, infant) #Rstats | data visualization | microViz - R package and Shiny app Maastricht Joined December 2017-
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What effect do #prebiotics have on infant gut #microbiota resilience after antibiotic exposure? @MF_Endika @_david_barnett_ @hauke_smidt et al. use a cool in vitro colon model in frontiersin.org/articles/10.33…
Great experience last week, being part of the @evomics workshops again! 🤩 I highly recommend joining the next edition in Jan 2024 ❄️ evomics.org/workshops/work… Gain a broad practical foundation in genomic bioinformatics 👩💻🧬 and also have fun in an inspirational environment! 🥳🏞️
Human milk oligosaccharides, antimicrobial drugs, and the gut microbiota of term neonates: observations from the KOALA birth cohort study Speaker: David Barnett youtube.com/watch?v=KUe_ye…
Hooray! 😁Thanks to collaborators on this work especially @MF_Endika @WUR and my supervisors @artsilja & @penderslab at @MaCSBio & @MMI_MUMC 🙏 And thanks to the organisers of MVIF! I highly recommend attending the next editions of these free online microbiome events!
Hooray! 😁Thanks to collaborators on this work especially @MF_Endika @WUR and my supervisors @artsilja & @penderslab at @MaCSBio & @MMI_MUMC 🙏 And thanks to the organisers of MVIF! I highly recommend attending the next editions of these free online microbiome events!
⏰In less than 16 hours for Pacific time zones! Check your local time & date ⬇️ Yesterday we had a great Atlantic event, join our speakers to discuss their works! 🤩
⏰In less than 16 hours for Pacific time zones! Check your local time & date ⬇️ Yesterday we had a great Atlantic event, join our speakers to discuss their works! 🤩
We’re “pivoting” Elicit with GPT-4 😉 Elicit in 2022 took unstructured text in papers and structured it into a table. Elicit in 2023 will take this structured text and enable you to “pivot” it, grouping it by concepts. Sign up here: elicit.org/gpt4-waitlist
NEXT, #MVIF selected talks: ⭐️HMOs, antimicrobials & neonate microbiome 🇳🇱@_david_barnett_ 1/3
NEXT, #MVIF selected talks: ⭐️HMOs, antimicrobials & neonate microbiome 🇳🇱@_david_barnett_ 1/3 https://t.co/UY4c7zFmqF
@_david_barnett_ Check out David's R package github.com/david-barnett/…
🤩In 24 hours for Atlantic time zones and in 60 hours for Pacific ones!🦠🧫🧬 Check your ⏰local time and date, add to 📆your calendar, and read the 📖full program here ➡️microbiome-vif.org/en-US/-/future… Registration (free!)➡️ hopin.com/events/microbi… Thanks @QIAGEN for the support! 🙌
Congratulations to our PhD student @_david_barnett_ for winning the Amrapali Zaveri Award for Early Career Data Scientist 2023! 🥳
Congratulations to our PhD student @_david_barnett_ for winning the Amrapali Zaveri Award for Early Career Data Scientist 2023! 🥳
Next week! 📆 #MVIF will cover: ⭐️early life microbiome ⭐️HMOs, antimicrobials & neonate microbiome ⭐️gut parasites microbiome ⭐️characterizing unknown genes ⭐️AI for microbiome&CRC ⭐️microbiome meta-analysis resource Registration link and local time&date ⬇️
Next week! 📆 #MVIF will cover: ⭐️early life microbiome ⭐️HMOs, antimicrobials & neonate microbiome ⭐️gut parasites microbiome ⭐️characterizing unknown genes ⭐️AI for microbiome&CRC ⭐️microbiome meta-analysis resource Registration link and local time&date ⬇️
March #MVIF program is out🤩 Keynote 🇺🇸Prof. Dominguez-Bello (@RutgersU) Talks 🇳🇱@_david_barnett_ 🇩🇪@AnkurMidha3, @vhjarquind 🇪🇸@alvarordr Highlights 🇯🇵Ryza Rynazal 🇮🇹@paolo_manghi 📆Time&date (different from usual) t.ly/USlp ✍️Register t.ly/xilxr
👉Important message: a striking lack of correlation between #pathway abundance🦠and plasma #metabolite levels🩸(cohort, n=1055), emphasising that gene abundances in gut metagenomes are not (on their own) a useful predictor of plasma metabolic outputs. nature.com/articles/s4158…
I am excited to share the preprint of my first postdoc paper (with @blekhman @frankwalbert @DemerathE), “Human milk variation is shaped by maternal genetics and impacts the infant gut microbiome” !!! biorxiv.org/content/10.110… This project began…
New PhD vacancy on clinical decision support for precision medicine at our Euregional Microbiome Center partner Prof. K. Van Steen @UniversiteLiege Check it out 👇 euraxess.ec.europa.eu/jobs/62406 ##MSCA Doctoral Networks #MachineLearning
"The person-to-person transmission landscape of the gut and oral microbiomes". Our work on microbiome stransmission published today open-access in @Nature! Fantastic work @MireiaVallesc, the whole @cibiocm group @CIBIO_UniTrento and all the collaborators! nature.com/articles/s4158…
The very first 2023 @MicrobiomDigest 👉 microbiomedigest.com/2023/01/13/jan… cardio /@HamdiAJama @dakotarrj KOALA /@_david_barnett_ @MF_Endika cheese /@christinacsaak SemiBin2 /@ShaojunPan & invitation for @MicrobiomeVIF!
First paper of 2023 is out in #GutMicrobes! HMO's, antimicrobials and the neonatal gut microbiota👇 tandfonline.com/doi/full/10.10… Big congrats to 1st authors @_david_barnett_ @MF_Endika and thx to great collab with @MaCSBio @WUR Food Chemistry @MIB_WUR @MaastrichtUMC and many others
1/5. Make collider bias make sense. (I'll try) Conditioning on a collider (variable caused by outcome and predictor) induces a noncausal association between the predictor and outcome. But why?
Today @_david_barnett_ from @MaastrichtU is giving us a workshop on his #rstats package #microViz for #microbiome analysis. Got curious? 🔎david-barnett.github.io/microViz/index…
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