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Andrew Carroll @acarroll_ATG

Product lead, Genomics @GoogleHealth. Mountain View, CA Joined April 2015
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Andrew Carroll retweeted
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Heng Li @lh3lh3

a day ago

Now published in GigaScience with minor improvements: academic.oup.com/gigascience/ar… * Download: zenodo.org/records/149035… * More info: github.com/lh3/panmask

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Heng Li @lh3lh3

2 months ago

Now published in GigaScience with minor improvements: academic.oup.com/gigascience/ar… * Download: zenodo.org/records/149035… * More info: github.com/lh3/panmask

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Andrew Carroll @acarroll_ATG

2 weeks ago

I'll be speaking in this webinar (go.roche.com/sbx-d) on September 10, where I'll share our benchmarks and observations for Roche's SBX sequencing instrument, as well as models developed by our team for SBX data.

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Andrew Carroll @acarroll_ATG

a month ago

This blog highlights the recent publication of DeepPolisher, but it was also a nice opportunity to write about research work to a more general audience and frame against the backdrop of how sequencing works, why we make genome assemblies, and how we improve and use them.

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Google Research @GoogleResearch

a month ago

This blog highlights the recent publication of DeepPolisher, but it was also a nice opportunity to write about research work to a more general audience and frame against the backdrop of how sequencing works, why we make genome assemblies, and how we improve and use them.

Andrew Carroll retweeted
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Google Research @GoogleResearch

a month ago

Introducing DeepPolisher — in collaboration with UC Santa Cruz Genomics Institute, we developed this new open-source method to improve genome assembly accuracy. It reduces indel errors by 70% and total assembly errors by 50%. Learn more: goo.gle/3Hn8PCG

Andrew Carroll retweeted
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Javier Santoyo @jsantoyo

a month ago

The Platinum Pedigree: a long-read benchmark for genetic variants. #HumanGenome #ReferenceGenome #PlatinumPedigree #LongReads #Benchmarking #GeneticVariants @naturemethods nature.com/articles/s4159…

Andrew Carroll retweeted
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Human Pangenome Reference Consortium @HumanPangenome

2 months ago

An emerging polishing pipeline, DeepPolisher, improves genome assemblies by reducing indel errors and correcting false homozygosity. Applied to 180+ HPRC assemblies, it cut errors by 54% and significantly boosted overall quality. Here’s how… genome.cshlp.org/content/35/7/1…

Andrew Carroll retweeted
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Human Pangenome Reference Consortium @HumanPangenome

4 months ago

📢 HPRC Release 2 is here! Now with phased genomes from 200+ individuals, a 5x increase from Release 1. Explore sequencing data, assemblies, annotations & alignments in our interactive data explorer ⬇️: humanpangenome.org/hprc-data-rele…

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Andrew Carroll @acarroll_ATG

6 months ago

Nice to see the impact of this important work. This benchmark set (v4.2.1) drove a huge amount of improvement sequencing. All seq instruments use it to quantify performance. Best credit is to @GenomeInABottle, who drove the field forward both in this work and over a decade.

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Cell Press @CellPressNews

6 months ago

Nice to see the impact of this important work. This benchmark set (v4.2.1) drove a huge amount of improvement sequencing. All seq instruments use it to quantify performance. Best credit is to @GenomeInABottle, who drove the field forward both in this work and over a decade.

Andrew Carroll retweeted
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Vivek Natarajan @vivnat

7 months ago

Accelerating scientific discoveries and helping cure diseases might be the most profound purpose of AI. Thrilled to introduce our @GoogleAI @GoogleDeepMind @googlecloud AI co-scientist system, which I believe is an important milestone towards this. Blog -…

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