Henri van de Geest @geesthc
Bioinformatician @ HudsonRiverBiotechnology, Netherlands Believer of genetically edited plants for a better world. Husband,2 daughters; Christian #KerkvoorNU hudsonriverbiotechnology.com Wageningen Joined August 2009-
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What an era was this... We moved on, but hey, many, many warm memories with Canu! github.com/marbl/canu/rel… Goodbye. Do not expect another release. This is it, folks. The sequencing technology has moved on and Canu is all but obsolete now.
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Just tried the dorado v0.7.0 version, the basecalling quality gets a very nice jump! Not a minor increase, this is huge! (mode Q20 -> Q23) Any timeline prediction for minknow integration? data: ~1kb PCR amplicon, plant, plot made with Giraffe @nanopore @iiSeymour
Just tried the dorado v0.7.0 version, the basecalling quality gets a very nice jump! Not a minor increase, this is huge! (mode Q20 -> Q23) Any timeline prediction for minknow integration? data: ~1kb PCR amplicon, plant, plot made with Giraffe @nanopore @iiSeymour https://t.co/Q403lSL5XW
Henri van de Geest retweeted
New blog: Transforming Basecalling in Genomic Sequencing by @samgd #nanoporeconf nanoporetech.com/blog/transform…
Shiny apples they have here! At Hudson River Biotechnology we are using ONT sequencing to detect our CRISPR based gene edits in many different crops. What about a better shelf life? Nanopore seq brings us further everyday! @HudsonRiverBio1 #nanoporeconf hrb.bio
Henri van de Geest retweeted
Now, @nanopore only approaches are producing the best t2t automated assemblies ever produced with 30 contigs and 5 scaffolds! 🤯🤯🤯🤯 #nanoporeconf
Henri van de Geest retweeted
This is wild. OpenAI just dropped ChatGPT-4o and it will completely change the AI assistant game. 10 wild examples: 1. Visual assistant in real-time
#noorderlicht opeens heb je geluk, met het blote oog heel goed te zien. Het licht bewoog zelfs. Vanuit Duiven!
Henri van de Geest retweeted
R.I.P. scientific publishing and peer-review system. sciencedirect.com/science/articl… #academicTwitter #academic #academia #researchers #research #phd @PhDVoice @PhD_Genie
This seems interesting...! arcinstitute.org/news/blog/evo
Henri van de Geest retweeted
RT: Grain Club 👨🎓🧬🌾🔬🧩📈🧑🌾💚 Historic moment: @Europarl_EN votes FOR proposal @EU_Commission for the future regulation & application of new genomic techniques #NGT #CRISPR Good decision for #agriculture #CRISPRforEurope #EUFarm2Fork #Genomics #plantbreeding #FoodSecurity
Henri van de Geest retweeted
#AGBT24: Who are N26Tec? “This new method will revolutionize NGS sample prep workflow universally across virtually all assays. The simplicity and innovation will drastically improve workflow efficiency and data quality”
What is wrong with gpt4!? It constantly gives me flawed coding solutions, just like gpt3.5. Simple questions like basic dna operations cannot be translated into an awk solution. Every solution seems different, and not always right :( #justgotusedtoAI #ChatGPT4
Henri van de Geest retweeted
Interested in LLMs for genomic research but don't know where to start? looking for a review/survey to get started in this field? 👇👇😀 I am very excited to share that our review paper titled "To Transformers and Beyond: Large Language Models for the Genome" is now available as…
Henri van de Geest retweeted
Effect of smoking on your lungs 🚬 ‼️
We recieved 2 batches of 6 flongles, an guess what, all 12 are above warranty level! Ranging from 52 to 100 pores. Great HQ production @nanopore! Ready for more amplicon sequencing on a <100,- euro flowcell :) @HudsonRiverBio1
Henri van de Geest retweeted
New Resource: "A multi-omic Nicotiana benthamiana resource for fundamental research and biotechnology" rdcu.be/dl2Im With Research Briefing: "Reference genome and epigenome of the model and biofactory plant Nicotiana benthamiana" rdcu.be/dl2IH
#stomprocket on campsite, so much fun. In the dark even better!
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