Lorenzo Cerrone @lorenzocerrone
Joined September 2019-
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It's great to be at #i2k2024 #i2k and see (almost) everyone in bioimage analysis. If you're interested in OME-Zarrs or what we're doing with Fractal, stop by my poster today! :)
The hackathon is organized by the BioVisionCenter ( @VirginieUhlmann , @lorenzocerrone, Ethel Mendocilla Sato & me), @nfdi4bioimage 's @notjustmoore , EMBL's @tischitischer, CEITEC's @VladimirUlman , @scalableminds 's @normanrz & @perlman (5/5)
It's a great pleasure to announce that "CellTypeGraph" has been accepted at #CVPR2022! A new ML benchmark at the intersection between geometric learning and developmental biology! Thanks to all for the support @athul_r_v @tejasvinee_m @PlantDevTUM @FredHamprecht @PlantMorphoDyn
So happy to see our work with @guijacquemet, @LaineBioImaging and @HenriquesLab in @naturemethods out! I believe the topic is specially relevant for the #BioImageAnalysis community: "Avoiding a replication crisis in deep-learning-based bioimage analysis". nature.com/articles/s4159…
The explosive work of FOR281 members Hay & Tsiantis labs @mpipz_cologne on seed dispersal in Cardamine has been featured on @smartereveryday ! How cool 🌿💥 youtu.be/MUaTOoVmg1Q?t=… paper: bit.ly/2TXz1uQ
Always great to see such a thorough comparison for a real use case (spoiler: our @WolnyAdrian 's PlantSeg is doing pretty good)
Always great to see such a thorough comparison for a real use case (spoiler: our @WolnyAdrian 's PlantSeg is doing pretty good)
Our 3D ovules are out in eLife. Thanks to all great collaborations. @RacheleTofanel1 @StraussSoe @RichardSmithLab @lorenzocerrone @WolnyAdrian @PlantMorphoDyn elifesciences.org/articles/63262
Our 3D ovules are out in eLife. Thanks to all great collaborations. @RacheleTofanel1 @StraussSoe @RichardSmithLab @lorenzocerrone @WolnyAdrian @PlantMorphoDyn elifesciences.org/articles/63262
@UniHeidelberg (finally) featured PlantSeg our tool to segment plant cells in tissues. uni-heidelberg.de/en/newsroom/an… Publication: elifesciences.org/articles/57613 @lorenzocerrone @WolnyAdrian @PlantMorphoDyn
Pflanzenzellen mit 3D-Bildern analysieren: Heidelberger Wissenschaftler an Entwicklung neuer Bildverarbeitungssoftware beteiligt uni-heidelberg.de/de/newsroom/pf… #PlantSeg
So cool to study morphogenesis of a complex organ in full 3D and with cellular resolution. Meticulous work by @athul_r_v and @RacheleTofanel1. Great collaboration with @StraussSoe, @RichardSmithLab, @lorenzocerrone, @WolnyAdrian, @ilastik_team, #FOR2581 biorxiv.org/content/10.110…
First ever 3D plant cell atlas of Arabidopsis ovules. Cheers to @RacheleTofanel1 @PlantDevTUM and other coauthors. Its never possible without support of #MGX team @StraussSoe @RichardSmithLab and #plantseg team @lorenzocerrone @WolnyAdrian and the @PlantMorphoDyn
First ever 3D plant cell atlas of Arabidopsis ovules. Cheers to @RacheleTofanel1 @PlantDevTUM and other coauthors. Its never possible without support of #MGX team @StraussSoe @RichardSmithLab and #plantseg team @lorenzocerrone @WolnyAdrian and the @PlantMorphoDyn
"Kinderstudie": preliminary results out now. Ca. 5000 children and one parent were tested in Germany's southwest. Out of these, around 60 had antibodies against SARS-CoV-2: klinikum.uni-heidelberg.de/newsroom/vorla… 1/3
After over over two intense months, our preprint on Sars-CoV-2 antibody testing is out. We measure antibody binding based on Immunofluorescence, using high-throughput microscopy and image analysis to make the approach scalable. biorxiv.org/content/10.110…
Scientifically, this is new territory for us, but pixels are pixels everywhere, so it came together surprisingly fast. Many thanks to @CiidHeidelberg for giving us the opportunity to contribute to this important work.
Scientifically, this is new territory for us, but pixels are pixels everywhere, so it came together surprisingly fast. Many thanks to @CiidHeidelberg for giving us the opportunity to contribute to this important work. https://t.co/lpBUkFWDhZ
Chances are you know this already, but we think it is a VERY nice and concise video about Corona Virus infection and what the world experiences in this very moment. youtu.be/BtN-goy9VOY @Kurz_Gesagt
VOLUNTEERS: The German Center for Infection Research (dzif.de/en) contacted us. They forwarded requests they have received from German hospitals and MDs. Check it out, and see if you can help: discourse.data-against-covid.org/t/request-for-… #COVID19 #HELP #VOLUNTEERS
Plant Science Research Weekly: plantae.org/plant-science-… Cotton genomics, Selaginella expression map, Primary vs lateral root responses, reciprocal cybrids, effect of herbivory on temp responses, PlantSeg for 3D image segmentation, and mitigating As in urban gardens.
It's not ilastik, but it's still ours. If you need membrane-based segmentation for LM, check it out! Really fun collaboration with @AlexisMaizel and other great people who study plant morphodynamics plantmorphodynamics.com
It's not ilastik, but it's still ours. If you need membrane-based segmentation for LM, check it out! Really fun collaboration with @AlexisMaizel and other great people who study plant morphodynamics plantmorphodynamics.com
Accurate And Versatile 3D Segmentation Of Plant Tissues At Cellular Resolution biorxiv.org/cgi/content/sh… #biorxiv_plants
Luca Marconato @LucaMarconato2
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Camila Goldy 🌱🔬... @CamilaGoldy
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ilastik Team and Anna... @ilastik_team
3K Followers 379 Following Now on https://t.co/9UiaiMIJwV ilastik is an open source toolkit for interactive machine learning. It is developed in Anna Kreshuk's lab at EMBL,
Nasim Rahaman @nasim_rahaman
885 Followers 660 Following 👨🍳 @ Tiptree Systems. Previously, deep Learning and espresso slurping @MPI_IS + @Mila_Quebec + @MetaAI + @awscloud, physics @UniHeidelberg.
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4K Followers 209 Following Left Twitter, find me on https://t.co/1mNMHV1Fx3
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369 Followers 126 Following Image Analysis and Learning: News from the lab and friends. For the less official me, see @HamprechtFred. #StandWithUkraine 🇺🇦
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226 Followers 190 Following ML Research Scientist @Bayer. Prev: PhD in Machine Learning @UniHeidelberg, Postdoc @ilastik_team @EMBL. Terran is my main
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Papers with Code @paperswithcode
115K Followers 10 Following Our mission is to organize science by converting information into useful knowledge.
JuliaCon 2025 @JuliaConOrg
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PyData Südwest- 🤖... @PyDataSW
382 Followers 49 Following we are part of the worldwide PyData community. Meetups in Karlsruhe, Mannheim, Heidelberg. Join us on meetup: https://t.co/veh2erHIbg
pyscript_dev @pyscript_dev
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56K Followers 6K Following Create, edit & publish your research - all from your browser. Our real-time collaborative LaTeX editor automatically produces & displays your typeset document.
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