GencodeGenes @GencodeGenes
Human And Vertebrate Analysis aNd Annotation (HAVANA) team, part of the Ensembl group at the European Bioinformatics Institute. gencodegenes.org Joined November 2011-
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We're pleased to share our GENCODE 2025 NAR database paper: tinyurl.com/3etnfw4j Thanks to all our collaborators, friends and users. This is now the main citation for our resource, and hopefully also a good explanation of how and why we do what we do.
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3/ How do we interpret immunopeptidomics support in biological terms? How many of these ORFs are bona fide proteins as opposed to unstable peptides or aberrant products? What does this mean for annotation? These are open questions and our work continues... @genenames @uniprot
2/ Relatively few Ribo-seq ORFs have peptide support from tryptic digests, although substantial numbers are supported by immunopeptidomics data. Many thanks to our large number of collaborators @EricWDeutsch @r_l_moritz @johnprensner @s_heesch
1/ GENCODE continue to work on the annotation of non-canonical translations identified by Ribo-seq, and are pleased to support this preprint which examines which ORFs express protein products: biorxiv.org/content/10.110…
GencodeGenes retweeted
We are excited to publish our second-ever Registered Report! The #LRGASP Consortium evaluated various methods for transcript identification and quantification using long-read sequencing technologies. @anaconesa @TheSheynkmanLab @TheBrooksLab @calizavi nature.com/articles/s4159…
GencodeGenes retweeted
I´m thrilled to see our #LRGASP paper published in @naturemethods today. This is the work of many to benchmark long-read methods for transcriptomics, and a must-read paper for those using lrRNA-seq. Special thnks to @FJPardoPalacios and @TheBrooksLab (1/6) rdcu.be/dJ9ev
GencodeGenes retweeted
DNA and RNA sequencing methods are rapidly evolving, each with its own benefits and challenges. Find out how the Long-read RNA-Seq Genome Annotation Assessment Project (LRGASP) can help you choose the right long-read sequencing method for your research. nature.com/articles/s4159…
Out today: the Long-read RNA-Seq Genome Annotation Assessment Project (LRGASP) paper, featuring contributions from many GENCODE members, a systematic evaluation of methods for long-read transcript detection and quantification: nature.com/articles/s4159…
GencodeGenes retweeted
If you are attending #ESHG2024 come and talk to us at 20.063.D in the poster area about our initiative to annotate non-canonical ORFs @ensembl #bioinformatics #genomics #berlin
GencodeGenes retweeted
We had an amazing attendance this morning for the @ensembl workshop at #ESHG2024 #berlin 🎉 @EBItraining @emblebi
GencodeGenes retweeted
🥳👇🧠Calling all RN-Aficionados! The deadline for #ncRNA2024 has been extended to 11 June. Remaining places are filling fast so be sure to submit your Abstract ASAP. @RNASociety @jrRNAscientists @NCCR_RNADisease @GencodeGenes @NCCR_RNADisease @RNASociety #RNA #ncRNA #lncRNA
🥳👇🧠Calling all RN-Aficionados! The deadline for #ncRNA2024 has been extended to 11 June. Remaining places are filling fast so be sure to submit your Abstract ASAP. @RNASociety @jrRNAscientists @NCCR_RNADisease @GencodeGenes @NCCR_RNADisease @RNASociety #RNA #ncRNA #lncRNA
That might be a gin&tonic in my hand, but it still holds true that #recount3 is a wonderful resource and super useful in our annotation efforts! Great to meet you @lcolladotor!!
That might be a gin&tonic in my hand, but it still holds true that #recount3 is a wonderful resource and super useful in our annotation efforts! Great to meet you @lcolladotor!!
GencodeGenes retweeted
You might know someone but you will definitely come across people whom you do not know that are somehow connected to you It’s a pleasure to discover these connecting 🧵s #BoG24 Known: #PEC2 data harmonization Me ↔️ @julcollado ↔️ @GuigoLab Unknown: #recount3 ➡️ @GencodeGenes
GencodeGenes retweeted
👀👇☀️Dear Colleagues, there are 2 weeks left to submit an abstract at our October conference #ncRNA2024! Why come? -Brilliant international speakers -fantastic city -loads of networking + social time -high probability of selected talks. So come join us!
👀👇☀️Dear Colleagues, there are 2 weeks left to submit an abstract at our October conference #ncRNA2024! Why come? -Brilliant international speakers -fantastic city -loads of networking + social time -high probability of selected talks. So come join us!
The latest human GENCODE releases for Human (45) and Mouse (M34), have just been released. They're available via gencodegenes.org and visible in @ensembl genome browser as part of Ensembl 111 ensembl.org
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