Josh Cuperus @RNAnerd
Genomics in Plants and Yeast, Assistant Professor Joined January 2012-
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Josh Cuperus retweeted
Genetically engineered chestnut tree, grown in Syracuse, moves one step closer to release 🧬🌳 | If approved, Darling-54 -a fungus resistant event- would be the first genetically engineered tree made for large-scale reforestation, and could save the American chestnut from the…
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Josh Cuperus retweeted
What are the fitness consequences of rDNA copy number variation within and outside the lab conditions? Do fitness effects change when growth conditions differ? In the new #GENETICS study @RNAnerd and colleagues answer these questions using #yeast: buff.ly/gxFNCbA
Josh Cuperus retweeted
Our latest paper is out in its final form in @ThePlantCell We show that in plants the same DNA sequence can act as an insulator or silencer depending on the surrounding regulatory context. Read the full paper at: doi.org/10.1093/plcell…
Josh Cuperus retweeted
Mapping genetic modifiers of epimutation rates reveals a punctuated-equilibrium model of CG methylome evolution biorxiv.org/content/10.110…
Josh Cuperus retweeted
New preprint! An atlas of conserved TF binding sites across flowering plants generated with multiplexed DAP-seq. When integrated with multi-species snRNA- and snATAC-seq reveals how TF activity shapes development and stress responses at the cellular level.biorxiv.org/cgi/content/sh…
Josh Cuperus retweeted
Our lab is looking for a postdoc @UWgenome/@UW/@UWISCRM! We tackle a wide range of biological Qs from cell-specific responses to perturbation to molecular consequences of aging. We also work hard on new #TeamMassSpec methods to scale the # of proteomics samples we can analyze.
Josh Cuperus retweeted
Out now on biorxiv: We studied the activity of enhancer-blocking insulators in plants and found that they also act as silencers when placed upstream of moderate to weak enhancers. biorxiv.org/cgi/content/sh…
Josh Cuperus retweeted
Excited to share our latest work investigating the consequences of extant genetic variation in cis-regulatory elements at single-cell resolution. A short 🧵 biorxiv.org/content/10.110…
Josh Cuperus retweeted
Are CpG methylation and chromatin accessibility polar opposites? #Fiberseq proves they are not in #maize – transposon enhancers can have simultaneous single-molecule hyper-mCpG AND chromatin accessibility. Wonderful collaboration w/ Queitsch lab & @RNAnerd biorxiv.org/content/10.110…
Josh Cuperus retweeted
Climate change be damned! Out in @NatureComms, we interrogated over 54k plant terminator sequences to synthetically design robust terminators for crop engineering. tinyurl.com/d63n894r
Thrilled to present our collaboration w/ @stergachislab members “The regulatory potential of transposable elements in maize”. Single-molecule Fiber-seq - accurate and sensitive accessibility in maize. New open chromatin regions in LTRs and much more! biorxiv.org/cgi/content/sh…
Josh Cuperus retweeted
I'm thrilled to announce the complete program for #ICAR2024SanDiego! 👉🏽Please check out the amazing line of up over 300 speakers in nearly 50 sessions! I hope to see you soon in San Diego.. icar2024.weebly.com/full-program.h…
Josh Cuperus retweeted
I understand imitation is the sincerest form of flattery, but as junior faculty it is frustrating when @nanopore copies the figures of your work verbatim without any credit. youtube.com/watch?v=1NkBr3… Figure 1: biorxiv.org/content/10.110… Figure 4: biorxiv.org/content/10.110…
Josh Cuperus retweeted
Please join us for a tribute symposium on May 17 to Philip Benfey, a luminary in plant biology. Details and Zoom link here: as.nyu.edu/departments/bi…
Josh Cuperus retweeted
IN BRIEF: Dissecting and redesigning enhancers of photosynthesis genes (Peng Liu) buff.ly/49TCLyH @RNAnerd @ASPB #PlantSci
Josh Cuperus retweeted
Josh Cuperus- Univ of Washington-Seattle, @RNAnerd is organizing the "Chromatin at Single-cell & Single-molecule Resolution" session at #ICAR2024SanDiego. Submit your abstract by 15 April. See session description (#7) here- icar2024.weebly.com/mini-symposiaw…
Check out our new work!
Josh Cuperus retweeted
Plant enhancers exhibit both cooperative and additive interactions among their functional elements (Tobias Jores, Jackson Tonnies, Nicholas A Mueth, Andrés Romanowski, Stanley Fields, Josh T Cuperus, Christine Queitsch) buff.ly/3vlf2t0 @RNAnerd @ASPB #PlantSci
Josh Cuperus retweeted
Structural variants (SV) impact more nucleotides per human genome than other forms of genetic variation. To better understand SV impact, we developed a method to 'shuffle' mammalian genomes and characterize them with single-cell resolution in a pool. biorxiv.org/content/10.110…
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Kamala Harris @KamalaHarris
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Kong Wong @Kong_M_Wong
739 Followers 2K Following Postdoc @DanforthCenter | PhD @GeorgiaTech | BS @CarnegieMellon | Biomolecular NMR Spectroscopist turned Plant/Soil Scientist | Leadership Coach | he/him 🏳️🌈
Anne Villacastin @AnneVillacastin
29 Followers 150 Following 🇵🇭👩🔬🌾Berkeley Lab Postdoc @jbei @lbnl @unlv
Muhammad Waseem @waseempbg786
363 Followers 3K Following Plant Breeder & Geneticist, Evolutionary Biologist. Ecology. MS student. National Taiwan University(NTU) Looking for a PhD opportunity in above areas.
Xun Wang @XunWang8
222 Followers 649 Following
Kamil Ruzicka @_kamilruzicka
264 Followers 203 Following Plant biologist. Focusing on the role of RNA processing in hormonal pathways.
Anastasia McKinlay @AnastasiaM13480
8 Followers 44 Following Research Associate in Craig Pikaard Lab
Tyler Inskeep (they/t... @trinskeep
239 Followers 704 Following PhD candidate in the Groen Lab @ UC Riverside. evolutionary systems biology, plant development, root-knot nematodes. they/them 🏳️🌈
Benjamin Chavez @SynBioBoy
117 Followers 629 Following
Koushik @koushik_here
861 Followers 8K Following Machine Learning for biology | Deep Learning Data Scientist @Bayer4Crops | Prev: PhD @IowaStateU | he/him
Angela Yu @angelamyu
155 Followers 437 Following Tackling RNA regulation and structure with computation and experiments.
Daniela Liebsch @DanielaLiebsch
878 Followers 1K Following Plant biologist, trying to understand how plants work. Meristems, cell walls, growth, energy metabolism, senescence. #plantsareamazing
Anna Stepanova @ANStepanova45
362 Followers 251 Following Professor of Plant Biology and Genetics, North Carolina State University
Lews Caro 🇨🇴 @Lewsiferase
397 Followers 628 Following Evolution, biochemistry, and wherever that all takes me next! HHMI-Jane Coffin Childs post-doc with @ElEarlyBird. Ph.D @MCBSeattle. ColombianoTrends for United States
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