Gregor Sturm | [email protected] @grsturm
Clinical Bioinformatics @Boehringer interested in single-cell, workflows, software | @scverse_team core dev | Tweets are my own | @[email protected] grst.github.io Biberach, Germany Joined August 2019-
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Gregor Sturm | [email protected] retweeted
It's happening! 🧬🤓🧑💻 #scverse2024 Thrilled to see so much engagement in person. @scverse_team 🙌
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Felix Petschko presented our v0.18 release of scirpy at the @scverse_team conference today: - 16x speedup of hamming distance - 120x speedup of clonotype clustering - 100x speedup by adding tcdist3 metric compared to previous alignment metric scirpy.scverse.org/en/latest/chan…
For anyone who is working with Personalis data: We made an R package that automates loading the data into a MultiAssayExperiment: github.com/Boehringer-Ing…
Gregor Sturm | [email protected] retweeted
Bonne journée 😬
Gregor Sturm | [email protected] retweeted
Ever wondered what the equivalent of differential gene expression is for cell-cell communication ? Look no further...it's MultiNicheNet, the first statistically sound framework for multi-sample multi-condition comparison of intercellular communication 👉doi.org/10.1101/2023.0…
Gregor Sturm | [email protected] retweeted
Today our Human Lung Cell Atlas (HLCA) paper came out in Nature Medicine nature.com/articles/s4159…! The HLCA includes 2.4M cells from 486 individuals and 49 datasets. Check out this tweetorial to learn more about how we built it, and how you can use it (1/21)
Gregor Sturm | [email protected] retweeted
The #OpenSource project @scverse_team is now part of NumFOCUS as a sponsored project! Join us in welcoming them and helping advance open science initiatives. Learn more about the project here: numfocus.org/project/scverse! #OpenScience #DataScience #AI
Gregor Sturm | [email protected] retweeted
Tonight at 18:00 CEST @g_palla1 will present SpatialData, our new data structure for experiments with spatial resolution! Join our community meeting if you are interested! More details + zoom link: hackmd.io/VfVLKb3ETGKN2j…
Gregor Sturm | [email protected] retweeted
Reminder: scverse community meeting about Genomic Ranges support tomorrow. We start with a short intro to the BiocPy GenomicRanges implementation by @jayaram. more details: hackmd.io/VfVLKb3ETGKN2j…
Reminder: scverse community meeting about Genomic Ranges support tomorrow. We start with a short intro to the BiocPy GenomicRanges implementation by @jayaram. more details: hackmd.io/VfVLKb3ETGKN2j…
Gregor Sturm | [email protected] retweeted
Follow-up meeting on Genomic Ranges support for AnnData! Join our next community meeting (2023-05-16 18:00 CEST) if you are interested. Joining info: hackmd.io/VfVLKb3ETGKN2j…
Follow-up meeting on Genomic Ranges support for AnnData! Join our next community meeting (2023-05-16 18:00 CEST) if you are interested. Joining info: hackmd.io/VfVLKb3ETGKN2j…
Gregor Sturm | [email protected] retweeted
📢 Two new packages for single-cell analysis just got added to our ecosystem 🎉. Here’s a short overview: scverse.org/packages/#ecos…
Gregor Sturm | [email protected] retweeted
Had a great time! Thanks to organizers and attendees! I'd especially like to thank @Bioconductor's @wolfgangkhuber, @grimbough, and Martin Morgan for coming out. It's fantastic to work on interoperability with you, and looking forward to doing more in the future!
Had a great time! Thanks to organizers and attendees! I'd especially like to thank @Bioconductor's @wolfgangkhuber, @grimbough, and Martin Morgan for coming out. It's fantastic to work on interoperability with you, and looking forward to doing more in the future!
It was fantastic to meet so many scverse contributors in person! I also think we made good progress in those few days 👇
It was fantastic to meet so many scverse contributors in person! I also think we made good progress in those few days 👇
Gregor Sturm | [email protected] retweeted
Getting started with the @scverse_team hackaton 🧑💻 we co-host with @OliverStegle 's lab, with focus on interoperability and knowledge integration - we hope to contribute to the later with @omnipathdb and @BioCypherPy. Thanks @DanielBDimitrov and @gtcaa for organizing it!
In this single-cell study, we compare immune-cell profiles before and after machine perfusion of transplant livers. Once again using BD Rhapsody, we took a closer look at Neutrophils. Check out @SalcherStefan's thread for more details 👇
In this single-cell study, we compare immune-cell profiles before and after machine perfusion of transplant livers. Once again using BD Rhapsody, we took a closer look at Neutrophils. Check out @SalcherStefan's thread for more details 👇
Gregor Sturm | [email protected] retweeted
@DanielBDimitrov Great source of tissue and disease-specific atlases: teichlab.org/data
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