Danielle Miller @Daniellemlrs
PhD candidate @ TAU | Bioinformatician | Data scientist Joined June 2017-
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Excited to team up with the most talented @SheriHarari for this project. It's been a perfect way to wrap up our PhD journeys.
Excited to team up with the most talented @SheriHarari for this project. It's been a perfect way to wrap up our PhD journeys.
Imagine you’re a plasmid conjugating into a recipient cell. How would you overcome CRISPR-Cas and other bacterial defense systems? Encoding anti-defense mechanisms is one obvious way. But where? And how? @BruriaSamuel set out to explore! 🧵 1/6 biorxiv.org/content/10.110…
And.... It's out! Hit the link if you want to know more about how we used language models on microbial genomics data!
And.... It's out! Hit the link if you want to know more about how we used language models on microbial genomics data!
Can't believe it's been a year... a snapshot of our #COVID19 work during the first wave in israel is now live on the #aperiomagazine
Can't believe it's been a year... a snapshot of our #COVID19 work during the first wave in israel is now live on the #aperiomagazine
Our perspective piece on what we have learned and what we can hope to learn in the future from phylogenetic and phylodynamic analyses of SARS CoV-2 is out today in @ScienceMagazine with @m_a_martin and @dvaninsberghe science.sciencemag.org/content/371/65…
And a nice view of one of our keys figures....
@Daniellemlrs and @m_a_martin also wrote a blog post on the work for the Nature Research Microbiology Community here: naturemicrobiologycommunity.nature.com/posts/spreadin…
Our work in collaboration with @SternLab and led by @Daniellemlrs, @m_a_martin, @NoamHarel8, Omer Tirosh, and @taliakustin on the spread of SARS-CoV-2 into and within Israel during the spring wave is out today in @naturecommunications! Check it out here: nature.com/articles/s4146…
So excited that my work is finally out! academic.oup.com/mbe/advance-ar…
So excited that my work is finally out! academic.oup.com/mbe/advance-ar…
Want to read about crazy viruses (phages) that cheat?? Check out our new paper with @moranmeir172 @NoamHarel8 @Daniellemlrs @ugophna advances.sciencemag.org/content/6/34/e…
You should read this. Winter is coming - and it's not looking good. Seroprevalence isn't high enough to protect you. The gov'ts are focused on reopening. We all want a holiday. We're all tired of restrictions. Soon we'll all be indoors. And #SARSCoV2 is waiting for opportunity.
You should read this. Winter is coming - and it's not looking good. Seroprevalence isn't high enough to protect you. The gov'ts are focused on reopening. We all want a holiday. We're all tired of restrictions. Soon we'll all be indoors. And #SARSCoV2 is waiting for opportunity.
Was privileged to present our recent work at the #COVIDdynamics conference covering #COVID19 epidemiology, modelling & evolution!
Was privileged to present our recent work at the #COVIDdynamics conference covering #COVID19 epidemiology, modelling & evolution!
Excited again to announce: COVID-19 Dynamics & Evolution - a 1-day virtual scientific conference covering the latest #COVID19 #SARSCoV2 research! Starting 6am Pacific/3pm CET on 30 July! Register here: cpd.ucsd.edu/covid19/ Here's a preview of what we'll cover... 1/4
Latest #coronavirus research: 👉People unlikely to spread the virus if more than 8 days since symptom onset. 👉The nose is the probable starting point for infections. 👉Genomic analysis contradicts finding on origins of first community spread in the US. go.nature.com/36TeUQF
Finally excited to share our work with @KoelleLab @m_a_martin and many others on features of SARS-CoV-2 spread. medrxiv.org/content/10.110… What did we find: 1. Sequenced 212 genomes from Israel @GISAID @nextstrain
James Michael Krieger @james_krieger
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231 Followers 2K Following Dad - Physician - Businessman - Aged meathead 🇺🇦 🍉 ...Jeroen Meijer @jeroen.. @jrnmeijer
66 Followers 328 Following Not active here, find me at the blue place. Phd candidate @BINFUtrecht @UniUtrecht. Metagenomics & computational modeling. Microbial communities, phages.Ella Rannon @EllaRannon
1 Followers 7 FollowingSheri Harari @SheriHarari
241 Followers 44 FollowingSan Emmanuel James, P.. @JSAN4CHRIST
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89 Followers 81 FollowingAdi Ben Zvi @BZman101
10 Followers 136 Following PhD Candidate @ Tel Aviv University | Viral Evolution & Bioinformatic AnalysisChristine Olson @cao_bio
319 Followers 1K Following How do bacterial-host interactions affect the brain? Postdoc: @ucsf @PTurnbaugh | Ph.D.: @uclamcip @pipethero | Thoughts are my own.SarkcessfulKofi Twent.. @sarkcessfulkofi
21 Followers 138 Following Its OKAY to ask for help when you need itShoichi Sakaguchi @sho1sakaguchi
151 Followers 291 Following Virology / RdRps / Cats / Veterinary medicineKeith Turner @kay_aych
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255 Followers 1K Following PhD student (Genetics,Genomics & Bioinformatics) at University of California @UCRiverside, Alumini @Official_ibab,@NCBS_Bangalore @ICGEB New DelhiBards @ViswapriyaM
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464 Followers 1K Following PhD researcher in @croninlab at @UofGlasgow. He/Him. imperpetuum mobile, dancer in the rain.Burstein lab @BursteinLab
524 Followers 277 Following Having fun with microbial genomic and machine learning @TelAvivUniAdrian Uscanga | אד.. @adriantrujillou
730 Followers 4K Following Mexican virologist physically strong and mentally indestructible! @RafaelNadal @Cristiano // Languajes🇪🇸🇫🇷🇬🇧🇮🇹🇵🇹🇮🇱 Voy con @XochitlgalvezOfir Cohn @CohnOfir
17 Followers 108 Following Post-doctoral fellow | Sankaran Lab | Boston Children's Hospital | Broad InstituteReem Abu Rass, PhD @ReemAburass
85 Followers 261 Following Postdoctoral Associate | Stanley Manne Children’s Research Institute at Ann & Robert H. Lurie Children's Hospital of ChicagoPINNI @PINNINTI9
238 Followers 3K Following PhD researcher studies `Behavior,Ecology and Evolution of fish`.DNA Deviants - #Synbi.. @DnaDeviants
2K Followers 5K Following #SynBio community + biweekly journal club run by PhD students 🧬 (https://t.co/vQeIueXvsj) - msg @kkajderowicz to cohost a jclub!Noam Auslander @AuslanderNoam
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216 Followers 347 Following PhD candidate, exploring gut #microbiome, analyzing #metagenomes, #bioinformatic pipelines, #machine_learning, #IBD & #Gastro research, #Antibiotic resistanceMoran Yassour @MoranYassour
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9 Followers 63 FollowingDdk @Ddk59553735
0 Followers 2K FollowingKarin Mittelman @KarinMittelman
92 Followers 205 Following Research associate @BursteinLab @TelAvivUni 🧫🧪 Microbial functional genomics; Antibiotic resistance; Epigenetics 🧬 Former grad student @BarkaiLabNoam Harel @NoamHarel8
27 Followers 46 FollowingAlison L Hill @alison_l_hill
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447 Followers 832 Following We are a network of postdocs. #WomenInScience Tell us more about yourself to be featured: https://t.co/61mirXbChh…VignuzziLab @VignuzziLab
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11 Followers 286 FollowingThe COVID-19 Data Blo.. @TheCOVID19Data2
52 Followers 535 Following Crunching numbers, exploring dataHans-Dieter Jostarndt @HJostarndt
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12K Followers 5K Following Physician. AssistantProfessor Pathology @slusom| CMO @impactlifeblood | 🗺️#SoMe Editor @TMRjournal | 🩸☕️ #𝔹𝕝𝕠𝕠𝕕𝕦𝕔𝕒𝕥𝕚𝕠𝕟Baristas | Wife + Mom of 6Jessi Omi @OhmyJessi1
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1 Followers 5K Following Please do not follow me. I will block you if you do.Aude Bernheim @AudeBer
5K Followers 982 Following Group leader @institutpasteur. @Mdmlab_paris Geneticist into how bacteria fight their viruses. Activist for more inclusive sciencesSheri Harari @SheriHarari
241 Followers 44 FollowingYaron Orenstein @OrensteinYaron
378 Followers 196 Following Associate Professor of Computer Science and Life Sciences, Bar-Ilan UniversityJames McInerney @jomcinerney
12K Followers 10K Following Chair in Evolutionary Biology and Leverhulme Research Fellow. Open Science Advocate. Emigrant. #Python Machine learning. #Pangenomes 🇮🇪 #firstgen He/HimAdi Millman @AdiMillman
1K Followers 697 Following Postdoctoral Fellow at the Laub Lab @MITBiology | PhD @SorekLab @WeizmannScienceBurstein lab @BursteinLab
524 Followers 277 Following Having fun with microbial genomic and machine learning @TelAvivUniElisabeth Bik @MicrobiomDigest
149K Followers 49K Following Science integrity consultant, PhD. #ImageForensics Previously @ Stanford and (gasp!) uBiome. She/her. elisabethbik.bsky https://t.co/V4MR7WVHiT 🇳🇱🇺🇸MIT CSAIL @MIT_CSAIL
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112K Followers 35 Following New Orleans, Dec 10-16, 23. https://t.co/ga8aOw615g Tweets to this account are not monitored. Please send feedback to [email protected].Hugging Face @huggingface
345K Followers 189 Following The AI community building the future. https://t.co/VkRPD0VKaZ #BlackLivesMatter #stopasianhateGoogle DeepMind @GoogleDeepMind
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85 Followers 261 Following Postdoctoral Associate | Stanley Manne Children’s Research Institute at Ann & Robert H. Lurie Children's Hospital of Chicagoעמליה דואק @AmalyaDuek
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2K Followers 16 Following The Berger lab at @MIT_CSAIL works on a diverse set of problems in computational biology and biomedicine. Account run by lab members.Noam Auslander @AuslanderNoam
395 Followers 350 Following Assistant professor @TheWistar | Machine learning, cancer genomics & microbiome | Tweets are my ownDvir Aran @dvir_a
6K Followers 652 Following Biomedical Data Science Lab; Assistant Professor @ Technion, Israel.Uri Shalit @ShalitUri
6K Followers 1K Following Machine learning researcher, working on causal inference and healthcare applications. Associate prof @TechnionLive @[email protected] @urish.bsky.socialDani (Vadim) Dubinsky @DaniVadim
216 Followers 347 Following PhD candidate, exploring gut #microbiome, analyzing #metagenomes, #bioinformatic pipelines, #machine_learning, #IBD & #Gastro research, #Antibiotic resistanceAviv Steiner @AvivSteiner
154 Followers 92 Following סקרן. אוהב דאטה. פוגע בworldle על הניחוש הראשון 66% מהפעמיםLife Sciences & Healt.. @LifeSciHealthIL
2K Followers 5K Following Sharing with the public various #lifesciences, #healthcare, #biotech, #medtech, #healthtech, and #medicalcannabis activities in #Israel.Kamala Harris @KamalaHarris
19.8M Followers 720 Following Fighting for the people. Wife, Momala, Auntie. She/her. Official account is @VP.Áine O'Toole @AineToole
7K Followers 3K Following Virus genomic epidemiology PhD. Hosts, pathogens & global health MSc. @NetworkArtic, Rambaut Lab, Edinburgh Uni. She/herStanford University @Stanford
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9 Followers 63 FollowingKarin Mittelman @KarinMittelman
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27 Followers 46 FollowingDr Pleuni Pennings #B.. @pleunipennings
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21K Followers 388 Following Weekly RoCur (Rotating Curator) @AmstatNews Committee on Women in Statistics #WSDS Learn & sign up: https://t.co/aV1Fcdxd5c This week:VignuzziLab @VignuzziLab
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11 Followers 286 FollowingAlison L Hill @alison_l_hill
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80K Followers 824 Following Die Virenjägerin! 🏹🧬 Co-developer of @nextstrain! Using phylogenetics, I study viruses. I like ✈️ & 🐈 @[email protected] @firefoxx66.bsky.socialnature @Nature
2.6M Followers 4K Following Research, News, and Commentary from Nature, the international journal of science. For daily science news, get Nature Briefing: https://t.co/wGmQlQ8a4DScience Magazine @ScienceMagazine
4.0M Followers 483 Following The world's leading outlet for cutting-edge research in all areas of science. Follow @NewsfromScience for stories from our news team.Rony @RonyHirsch
639 Followers 1K Following Ph.D. student | Cognitive and Computational Neuroscience | Consciousness @TelAvivUni @of_sagol @ArcCogitate @mesec_Our paper is now out nature.com/articles/s4146… @SheriHarari @Daniellemlrs @shay_fleishon @BursteinLab I want to be happy but my heart is still torn to pieces with hostages incl. kids,women,elderly, being held for 107 days.
Millions of SARS-CoV-2 seqs out there..what info do they hide? Combining phylogeny & deep learning we infer hundreds of chronic infections & show they predict future evolution. Want to know how? 🧵 biorxiv.org/cgi/content/sh… @SheriHarari @Daniellemlrs @shay_fleishon @BursteinLab
Could not resist. Making that figure in 2019, I thought the newly uncovered diversity of antiphage systems was already incredible. We now know it was just the tip of the iceberg. I hope our new review will help people dive into this wonderful field. rdcu.be/dg3ql.
Thrilled to have played a small role in this fascinating project by the brilliant @SternLab! They analyzed > 11M viral genomes to detect chronic infections and investigate their potential contribution to the evolution of novel SARS-CoV-2 variants. Read more 👇
Millions of SARS-CoV-2 seqs out there..what info do they hide? Combining phylogeny & deep learning we infer hundreds of chronic infections & show they predict future evolution. Want to know how? 🧵 biorxiv.org/cgi/content/sh… @SheriHarari @Daniellemlrs @shay_fleishon @BursteinLab
Millions of SARS-CoV-2 seqs out there..what info do they hide? Combining phylogeny & deep learning we infer hundreds of chronic infections & show they predict future evolution. Want to know how? 🧵 biorxiv.org/cgi/content/sh… @SheriHarari @Daniellemlrs @shay_fleishon @BursteinLab
Delighted to be part of this exhilarating project with @Daniellemlrs! I am so grateful for this fantastic collaboration. Can't wait to hear your thoughts!
Millions of SARS-CoV-2 seqs out there..what info do they hide? Combining phylogeny & deep learning we infer hundreds of chronic infections & show they predict future evolution. Want to know how? 🧵 biorxiv.org/cgi/content/sh… @SheriHarari @Daniellemlrs @shay_fleishon @BursteinLab
Check out our posters today at #ILANIT2023! @YatirSolan (17:00, #27) - Phylogenetic mapping of secretion systems Ella Rannon (18:00, #56) - Machine learning prediction of antibiotic resistance genes @BruriaSamuel (20:30, #26) - How plasmids overcome bacterial defense systems
Imagine you’re a plasmid conjugating into a recipient cell. How would you overcome CRISPR-Cas and other bacterial defense systems? Encoding anti-defense mechanisms is one obvious way. But where? And how? @BruriaSamuel set out to explore! 🧵 1/6 biorxiv.org/content/10.110…
Excited to share our work in @NatureComms, where we developed viRNAtrap, a #deeplearning framework to find divergent viruses expressed in tumors. We uncover several unexpected viruses that have not been reported in cancer before. rdcu.be/c5o24
Today was my Ph.D. concluding seminar. It was wonderful to show my results and conclude all the hard work that we did. I'm thankful for all the people who supported and helped me during this great time. @TelAvivUni @LifeScienceTAU @ShmunisR
@BursteinLab Sounds super interesting, I have many questions but the main one is: what is the underlying mechanism that can explain the emergence of context in intra-gene genomics? I.e why is it important for gene A to be located near gene B? Couldn't this be an artifact of phylogeny?
Our lab's very first paper is out! 🤩 Using language models we predict the function of uncharacterized genes. Kudos to the talented @Daniellemlrs, who single handedly made this old dream of Dudu's come true 👑
Can we "read" microbial genomes using language models? We explore this idea in our paper "Deciphering microbial gene function using natural language processing" nature.com/articles/s4146… 🧵
So proud to have taken a small part in this beautiful study- using AI (NLP) models to read genomes and infer functions of genes @Daniellemlrs @BursteinLab
Can we "read" microbial genomes using language models? We explore this idea in our paper "Deciphering microbial gene function using natural language processing" nature.com/articles/s4146… 🧵
Great work from @Daniellemlrs!
Can we "read" microbial genomes using language models? We explore this idea in our paper "Deciphering microbial gene function using natural language processing" nature.com/articles/s4146… 🧵
It's out! huge team effort only possible thanks to collaboration of so many researchers @ugophna @simroux_virus @apcamargo @mkrupovic & many more! So what did we learn from mining tons of metatranscriptomes for RNA viruses? and what's next for this field?🧵sciencedirect.com/science/articl…
Can we "read" microbial genomes using language models? We explore this idea in our paper "Deciphering microbial gene function using natural language processing" nature.com/articles/s4146… 🧵
A year ago we open-sourced #AlphaFold Today we're freely sharing the predicted structures of all 200M+ proteins known to science - almost the entire protein universe! It's our gift to humanity, and a demonstration of the benefits AI can bring to society dpmd.ai/AF-22-LI