perry evans @oncolytic
computational biologist samesense.github.io/blog/ philly Joined November 2007-
Tweets1K
-
Followers358
-
Following1K
-
Likes9K
4) Like much of the work out of MIT Media Lab, the results are often predicated on bizarre ideological psychological frameworks. This stuff is basically astrology:
Did the Trump administration just take PubMed offline? That sound you hear is thousand of biomedical scientists screaming at their computers a week before the grant deadline.
github.com/samesense/get-… Use Hugging Face smolagents to grab a journal's RSS link. Here's a python script to find the rss url on a science journal's website. It leverages smolagents and meta-llama/Llama-3.3-70B-Instruct. @huggingface
This is the full video of the talk I gave earlier today about LLM usage on the command-line I put together a handout to accompany the talk here: github.com/simonw/languag…
This is the full video of the talk I gave earlier today about LLM usage on the command-line I put together a handout to accompany the talk here: github.com/simonw/languag…
GW: ultra-fast chromosome-scale visualisation of genomics data biorxiv.org/cgi/content/sh… #biorxiv_bioinfo
Try using floax to launch workflows. It reduces many keystrokes by obviating an extra run pane. #tmux #snakemake #nextflow github.com/omerxx/tmux-fl…
Data scientist: what do you use for a vector database? Biologist: addgene
UMAP edgelord needs to be incorporated into the scientific vocabulary
1/ Do you know who is crazyhottommy? 👇 It's me 🙃 I have been embarrassed by this pen name and tried to avoid it. First, how did it come into being?
youtu.be/jkrNMKz9pWU?si… @jeremyphoward on language models
A very intriguing result in the new Y chromosome paper, one that you might miss unless you read the paper closely... 1/6 nature.com/articles/s4158…
No AWS? No Azure? No GCP? 😥 No problem! All you need is Hugging Face! 🤗 Now, just by adding one parameter in AutoTrain, you can fine-tune custom LLMs on Hugging Face Spaces and choose GPUs like T4, A10g & even A100! 🚀🚀🚀 Your training will start in a few seconds and space…
Ohio Cryptic lineage update. The lineage is still present, but as far as I know the person still does not know they are infected. 1/
Mike Bostock doing his best @drob impression
1/ A large part of my job is producing detailed reports for commercial clients regarding how the ongoing pandemic will affect the market in the future. Weeks, months, years.
biosyntax.org Syntax highlighting for FASTA, FASTQ, CWL, BED, GTF, PDB, PML, SAM, VCF file formats
has anyone made bat (github.com/sharkdp/bat) for fasta files?
Some gradients between two colours look good, others suck. It's easy to tell the difference, but what *is* that difference?

Sophien Kamoun @KamounLab
40K Followers 28K Following Biologist at The Sainsbury Lab; passionate about plant pathogens and evolution; open science advocate; loves travel, food and sports; nomad and hunter-gatherer.
Atanas G. Atanasov @_atanas_
123K Followers 78K Following Editor-in-Chief: #CRBIOTECH & #ExplorDHT | PI of LBI-DHPS | Prof of IGAB-PAS | Leader: #DHPSP & #INPST | Expert Consultant in Biotech & Science Communication
Arjun Jacobs @JacobsArju64468
27 Followers 2K Following
Vrogooc @Vrogooc19016
4 Followers 612 Following
Spacex @Spacex19128
424 Followers 7K Following CEO and chief engineer of SpaceX; angel investor, CEO and product architect of Tesla, Inc.; owner and CEO of Twitter, Inc;🚀🌎
Kasey Connelly @ConnellyKa86056
59 Followers 2K Following
Nathaniel Blalock @NathanielBlalo2
184 Followers 194 Following Harnessing AI for Protein Design and Engineering in Dr. Philip Romero's Lab @UWMadCBE @DukeUBME
Allene Padberg @AlleneP58265
38 Followers 4K Following
Jeroen Van Goey @BioGeek
908 Followers 6K Following Staff Research Engineer in BioAI at @InstaDeepAI (part of @BioNTech_Group) ML for de novo peptide sequencing. https://t.co/KOjeWuazsk
Kevin K. Yang 楊凱�... @KevinKaichuang
21K Followers 6K Following Principal Researcher in BioML @MSFTResearch (@MSRNE). He/him/他. 🇹🇼
MavisLizzie @4bqltGUse0aJD04
70 Followers 7K Following
Frasleau @Frasleau15Ft
70 Followers 5K Following
Dashost @DashostRHyCv6
210 Followers 1K Following
Rosalie @hzhxUf3624a8Y1
66 Followers 7K Following
KayKay @kay367757
3 Followers 76 Following
Greg Tyrelle @gtyrelle
914 Followers 1K Following Personal account, foucsed on health, fitness and programming 🇳🇱 🇹🇼 Oh, and maybe some Drum and Bass
Tautuez @Tautuez3JmaCoH
43 Followers 4K Following
GailBertie @nmT9iH7YN41Wvsf
74 Followers 7K Following
Tonortir @TonortirTOGT0o
41 Followers 5K Following
Kennedy Akello @AkelloKenn8666
21 Followers 206 Following
Kasia @PhageHunterKW
2K Followers 3K Following PHAGE HUNTER/Biotech/Mol.Bio/mom/BLM/🌈#BiInSci / 🇪🇺🇵🇱Living in🇺🇸 //she/her//neurodiverse
Christine @sbNvG6BeXK1ONrI
83 Followers 7K Following
Cody Martin @pCodyM
95 Followers 183 Following Pythonista 🐍 | Rustacean 🦀 | @UWMadisonMDTP PhD candidate | @AnantharamanLab viral bioinformatics using AI | @TAMU alum | he/him
Norma_ @Norma7162956865
74 Followers 5K Following
Ruidong Wu @RuidongWu
213 Followers 531 Following PhD student at @MIT_CSAIL. Prev: @HelixonBio @UofIllinois @Tsinghua_Uni.
Jianmin Wang(王建�... @Jianmin4drugai
845 Followers 3K Following Ph.D. candidate of Yonsei University @yonsei_u; Data Science and AI Empowered Drug Discovery and Biomedicine.
Damiano Sgarbossa @damiano_sga
383 Followers 500 Following PhD student in Computational Biology @EPFL
AI Nuggets @AI_Nuggetz
792 Followers 5K Following Addicted to https://t.co/8kPTBGJ4Fj Super AI tools. We regularly share updates about everything AI. Join our AI Newsletter at https://t.co/FIZXBabifD
Helen @fZH4H7TEOY7STys
27 Followers 1K Following
silvia bernardos @silviaBF013
107 Followers 892 Following
Reju V @reju_v86286
75 Followers 710 Following
shevines @shevines122601
8 Followers 390 Following
Thaty @Thaty579787
14 Followers 1K Following
Joshua L. Payne @joshualevipayne
1K Followers 820 Following Computational Biologist. pRED, Roche Innovation Center Zurich
Nicholas Knoblauch @nwknobla
249 Followers 1K Following Statistical Geneticist at @BioMarin Pharmaceutical
Vithu Thangarasa @vithursant19
474 Followers 552 Following Principal ML Research Scientist at @CerebrasSystems, prev. at @Tesla and @UberAILabs, and former grad student at @uoguelph_mlrg and @VectorInst.
Annabel Diva @annabel_di94954
242 Followers 4K Following Forex Trader📈📉 World Traveler 🌍 Crypto Miner DM Me for more info 📩 Trader de opções binárias Forex expert
Michelle Patrick @MichelleP278
322 Followers 7K Following I’m Single lady. I like nature, camping in tent for vacation. And my kind of music is Gospel R&B with Country and Opera.
Susan Larry @SusanLarry69827
274 Followers 499 Following I'm single 😥 and i need serious relationship 💖
Marsja.se @MarsjaSe
696 Followers 1K Following Blogging about #Python and #RStats. Interested in data analysis, data visualization, among other things. Join the Telegram channel: https://t.co/vrbd6320QK
花夏@ママさん�... @lcydz75268555
42 Followers 370 Following 31歳・アパレル社長・最近の趣味は英会話・ママ活コミュニティ運営してます・フォローしてくれた人へママさん紹介してます♡
A Naqvi @aanaqvi
985 Followers 896 Following New York ripened, Philly hardened. First gen. Scientist (PhD). Human rights. Cancer genomics. Tweets are my own. #openscience
Michael Kennedy @mkennedy
29K Followers 5K Following A Python enthusiast and entrepreneur. Host of @TalkPython and @PythonBytes, founder of Talk Python Training. Python Software Foundation Fellow.
Edmund Miller @E_Miller88
150 Followers 1K Following @[email protected] https://t.co/f7DNFGWtLu https://t.co/aplCuY5GJA
TuringPost @TheTuringPost
76K Followers 13K Following Newsletter exploring AI&ML - AI 101, Agentic Workflow, Business insights. From ML history to AI trends. Led by @kseniase_ Know what you are talking about👇🏼
Kirtan Dave @DaveKirtan
798 Followers 5K Following # BioinformaticsGeek #spiritual #open source #python #data mining # NetworkBiology # Machine Learning
Kornia @kornia_foss
5K Followers 2K Following Advancing Computer Vision & Spatial AI, openly #computervision #opensource #AI
Lior Pachter @lpachter
47K Followers 2K Following Bren Professor of Computational Biology @caltech. Blog at https://t.co/FFQzhEsmhi. Tweets represent my views, not my employer's. #methodsmatter
Michael Eisen @mbeisen
73K Followers 13K Following I science & try to make science open. Tweets do not represent my employer's views, but are always correct. My conflicts of interest https://t.co/77P0LDdz6j.
Michael Hoffman @mich... @michaelhoffman
23K Followers 6K Following Chair, Comp Bio & Medicine Program, Princess Margaret Cancer Centre, @UHN. Assoc Prof, Medical Biophysics, University of Toronto. COI https://t.co/CvupKNIjZr
Aaron Quinlan @aaronquinlan
17K Followers 1K Following All things genome mutation, software for genomic discovery. Chairperson of @UUGenetics Co-director, DELPHI Data Science Init (he/him) https://t.co/6GKjALLFfk
Michael Schatz @mike_schatz
16K Followers 1K Following Bloomberg Distinguished Professor of Computer Science and Biology at Johns Hopkins University
Nils Homer @nilshomer
5K Followers 669 Following Moved to Bluesky: https://t.co/KghbVUvbBg "So long and thanks for all the fish"
François Chollet @fchollet
572K Followers 813 Following Co-founder @ndea. Co-founder @arcprize. Creator of Keras and ARC-AGI. Author of 'Deep Learning with Python'.
Sophien Kamoun @KamounLab
40K Followers 28K Following Biologist at The Sainsbury Lab; passionate about plant pathogens and evolution; open science advocate; loves travel, food and sports; nomad and hunter-gatherer.
NOETIK @NOETIK_ai
1K Followers 47 Following Noetik is an AI-native biotech harnessing self-supervised learning to discover better precision immunotherapies.
Silvi Rouskin @silvirouskin
9K Followers 638 Following Asst. Prof. at Harvard Medical School. #RNA biology#viruses #AI # https://t.co/Ihy7mZhjL5 @harvardmicro ; opinions are my own. https://t.co/9lMkSHvpn9
Retro Biosciences @RetroBio_
7K Followers 3 Following We're Adding 10 Years to Healthy Human Lifespan
Julian Englert @julian_englert
2K Followers 1K Following Engaging in self-constructive behavior. Protein data dealer at @adaptyvbio
Sasha Gusev @SashaGusevPosts
20K Followers 3K Following Statistical geneticist | Associate Prof at @DanaFarber / @harvardmed / @DFCIPopSci | Blogging at https://t.co/4D7UObBNdd
Julius AI @JuliusAI_
18K Followers 156 Following ⚡️Analyze datasets, create visualizations, solve math and much more!
Noelia Ferruz @ferruz_noelia
5K Followers 755 Following Group leader at @CRGenomica. Generative models for protein design 🥼🧪💻. Mountain lover 🏃♀️🚵♀️
Kyle Tretina, Ph.D. @AllThingsApx
4K Followers 461 Following Follow for AI in Digital Biology and Drug Discovery @NVIDIA, ex Insilico Medicine, ex Yale, PhD UMaryland, views are mine, DM for collabs
John Jumper @JohnJumperSci
1K Followers 0 Following
Maxime Rivest 🧙... @MaximeRivest
4K Followers 780 Following Easy LLM context for all! ✨pip install attachments Inspired by: ggplot2, DSPy, claudette, dplyr, OpenWebUI! Follow for: API design, AI, and Data 🐍CC📜🛠 maker
Jason Kelly @jrkelly
29K Followers 2K Following Co-founder and CEO at Ginkgo Bioworks ($DNA)🧬 Former Chair of US National Security Commission on Emerging Biotechnology 🇺🇸
Hannah Wayment-Steele @HWaymentSteele
2K Followers 722 Following Biomolecular dynamics, big datasets, small boats. Asst prof @UWBiochem. Before: @JCCFund fellow with @DorotheeKern, PhD @Stanford https://t.co/73Od8N9ZYF
Luke Yun @luke_yun1
610 Followers 158 Following Building | AI Research @harvardmed, @UniofOxford | Biomedical Engineering @UTAustin | Ex-@pfizer, @Merck
Kyle Corbitt @corbtt
17K Followers 259 Following Currently building @OpenPipeAI. Formerly @ycombinator, @google. I am always down to go on a quest.
Nicholas Runcie @NicholasRuncie
271 Followers 241 Following AI for Drug discovery | Oxford DPhil student @OPIGlets | Opinions my own
Michael Baym @baym
22K Followers 2K Following Microbiology, evolution, antibiotic resistance, applied math, molecular biotech. Associate Professor @HarvardMed. Basic research is the engine of progress
Nathaniel Blalock @NathanielBlalo2
184 Followers 194 Following Harnessing AI for Protein Design and Engineering in Dr. Philip Romero's Lab @UWMadCBE @DukeUBME
Ellen Zhong @ZhongingAlong
8K Followers 887 Following Assistant Professor @PrincetonCS. #ai4science #proteins247 #cryoem #cryodrgn ❄️🐉 Prev: @MIT @DeepMind @DEShawResearch. Currently moonlighting @generate_biomed.
Aaron Ring @aaronmring
9K Followers 930 Following Associate Professor at @FredHutch Studying #cytokines, (auto)antibodies, and #cancerimmunotherapy Founder: @SimchaTx, @Seranova, Stipple Bio, and @AriaxBio
Peyman Milanfar @docmilanfar
93K Followers 493 Following Distinguished Scientist at Google. Computational Imaging, Machine Learning, and Vision. Tweets = personal opinions. May change or disappear over time.
Hou Chao @houchao1
334 Followers 635 Following Protein dynamics, Protein language model, Mutation effect, Genetics | Postdoc @ColumbiaSysBio | PhD 2023 & Bachelor 2020 @PKU1898
Shreya Shankar @sh_reya
48K Followers 690 Following on the CS faculty job market | PhD @Berkeley_EECS, building https://t.co/PmuOqAYt6q | teaching https://t.co/CTWJ6z0JEg | formerly ML eng & undergrad @Stanford
Thomas Wiecki @twiecki
17K Followers 2K Following Founder of @pymc_labs - The Bayesian Consultancy https://t.co/pOpveNUsa3 @pymc_devs author.
merve @mervenoyann
80K Followers 5K Following open-sourceress at @huggingface 🧙🏻♀️proud Aegean, I work on computer vision, VLMs & agents | gençleri serbest bırakın
Dyno Therapeutics, In... @Dyno_Tx
3K Followers 56 Following Dyno Therapeutics is a pioneer in applying artificial intelligence to gene therapy, focused on AAV capsid engineering. Join our startup: https://t.co/Qw1SEcTjpp
owl @owl_posting
11K Followers 799 Following technical staff @noetik_ai || ex ml eng @dyno_tx || i write/podcast about bio ml at https://t.co/QPTHsR3fzm || art on https://t.co/SwGiuSjlXF
Jian Tang @tangjianpku
5K Followers 1K Following Associate Professor at Mila and Founder of @BioGeometryAI. Building generative AI foundational models, wet-labs, and manufacturing plants for protein design.
Jason Yim @json_yim
2K Followers 323 Following PhD student @MIT_CSAIL. Generative models, protein design. 🦋 Bluesky handle: https://t.co/MPlEjog02q On X until the exodus is complete.
Sangyun Lee @sang_yun_lee
1K Followers 367 Following PhD student @CMU_ECE | ex-intern @nvidia | Generative models
Jazz - the DB that sy... @jazz_tools
1K Followers 2 Following Jazz is an open-source DB that runs right in your frontend, containers and workers — with auth, permissions, files, multiplayer, E2EE & more.
Femke Plantinga @femke_plantinga
9K Followers 600 Following learn with me about AI. growth @weaviate_io
Jacob Stern @jacobastern
464 Followers 990 Following AI scientist @ Absci / deep learning for de novo antibody design
Nathan C. Frey @nc_frey
4K Followers 1K Following In the arena | Ex-@PrescientDesign • @Genentech | Advisor @atomscale & @guidelabsai | @MIT, @Penn PhD, @BerkeleyLab
Protenix @ai4s_protenix
525 Followers 64 Following Protein + X molecules. Discover the mysteries of life with AI.
Thomas Simonini @ThomasSimonini
9K Followers 797 Following Designing playable narratives 🎮 📖 Previously: - Co-author of AI Agents Course @huggingface ➡️ https://t.co/06Eg4DIzqZ - Author of the DRL Course ➡️ https://t.co/Vo4N7GQ7my
Jonathan Whitaker @johnowhitaker
10K Followers 1K Following Data scientist and AI researcher. R&D at https://t.co/9xrxRrGfEE.
Stanislav Fort @stanislavfort
14K Followers 7K Following Building in AI + security | Stanford PhD in AI & Cambridge physics | ex-Anthropic and DeepMind | progress + growth | 🇺🇸🇨🇿
Dr. Angela Rasmussen @angie_rasmussen
477K Followers 8K Following Virologist. PI @VIDOInterVac @USask. Co-EIC @Els_Vaccine. Jeopardy! loser. "Disreputable vaccine cheerleader." 🇺🇸in🇨🇦. Opinions my own. she/her
Dr Rebecca Richardson @mavisclare
4K Followers 4K Following Advanced Lecturer (@PWRStanford). Material Ambitions: Self-Help and Victorian Literature (@JHUPress). 19th-c lit, ecocrit, history of econ., medical humanities