ducktapeprogrammer @ducktapeprogra1
Rust + Mojo + Bioinformatics https://t.co/6etLO4NagA https://t.co/134SsiPvhR ducktape.blot.im Maryland Joined January 2019-
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I still think the more linguistic and dense nature of Perl, along with its OSS prevalence, make it a really interesting candidate as a language of choice for LLMs.
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ducktapeprogrammer retweeted
Sassy, a tool for fast approximate string matching (eg searching short DNA strings) is out now! Conceptually simple but very nice work with Rick Beeloo.
Sassy, a tool for fast approximate string matching (eg searching short DNA strings) is out now! Conceptually simple but very nice work with Rick Beeloo. https://t.co/Im2yt5OHyI
ducktapeprogrammer retweeted
One of the most complex regions in the human genome revealed. To me, it was fascinating to combine genome assembly and pangenome graphs (PGR-TK in Fig. 3e) algorithm techniques to uncover the hidden diversity across human populations. #genomics #bioinformatics
ducktapeprogrammer retweeted
Part 2 of my deep-dive into GPU programming with Mojo is live! I unpack sliding-window pooling, halo edges, prefix sums, & 2D indexing quirks, with sketches & code. Huge thanks to @Modular and @ehsanmok 🙌 Your puzzles & @manim viz sparked this dive. Read: shubhamg.in/posts/2025-07-…
ducktapeprogrammer retweeted
Missed today's community meeting? Catch up with the recording to learn all about Maxim's work on Hasher-based hashing, and the winning projects from Modular Hack Weekend, built by Martin, Seth, and Thomas: youtu.be/VHhX3CkbtjQ
Q3 Mojo roadmap looking awesome! Highlights: - apple Silicon GPU Support - requires clauses - struct extensions forum.modular.com/t/mojo-q3-road…
I'm admittedly late to the AI hype train and am playing catch up. So this might be old news to everyone else: neuronpedia.org 🤯
GPUs are for more than just games and AI! Check out github.com/sstadick/mojo-… from the last @Modular hackathon for interval overlap counting on the GPU. And github.com/BioRadOpenSour… for GPU based alignments. #gpucomic
GPUs are for more than just games and AI! Check out github.com/sstadick/mojo-… from the last @Modular hackathon for interval overlap counting on the GPU. And github.com/BioRadOpenSour… for GPU based alignments. #gpucomic
Catching up on some releases: Perbase 0.10.3: bugfix for --mate-fix when MAPQ scores are equal github.com/sstadick/perba… rust-lapper 1.2.0: fix to the BITS count algorithm for 25-30% improvement in perf github.com/sstadick/rust-…
lapper for CPU/GPU github.com/sstadick/mojo-… For the Mojo Hackathon this weekend I ported Lapper (from Brent Pendersen) to run on both CPU and GPU. Headline benchmark is the BITS algorithm from @ryanlayer coming in at around 140x faster than the CPU version. #ModularHackathon
ExtraMojo update is live! Two added datastructures with BitVec and BBHash. Updated for Mojo 25.4. extramojo.github.io/ExtraMojo/Extr… extramojo.github.io/ExtraMojo/Extr… github.com/ExtraMojo/Extr…
ish v1.2.0 released and available via conda! github.com/BioRadOpenSour… Updated to Mojo 25.4
Mojo 24.5 is out with all the python binding goodness! docs.modular.com/max/changelog/ And a webcomic? I hope all releases come with a webcomic. comic.modular.com @Modular #gpucomic
ducktapeprogrammer retweeted
I'm pleased to share an alpha version of GRanges, a Rust library for working with genomic ranges and their associated data. I wondered if it was possible to write a library that: 1. Has tidyverse-like syntax for genomic data manipulation. 2. Is extremely performant. It is.🚀
ducktapeprogrammer retweeted
For folks processing SAM/BAM files in Rust, this is a huge day :). The unification of SAM/BAM reading has been implemented in the excellent noodles library (github.com/zaeleus/noodle…), addressing one of the last remaining usability pain points of this excellent lib! cc @vsbuffalo
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